RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 PCSK7Q16549 785 aa7.62□□□□□ -1.19
NUP54-206ENST00000508465 ALDH16A1Q8IZ83 802 aa7.62□□□□□ -1.19
NUP54-206ENST00000508465 GAS2L2Q8NHY3 880 aa7.62□□□□□ -1.19
NUP54-206ENST00000508465 KIAA1024Q9UPX6 916 aa7.62□□□□□ -1.19
NUP54-206ENST00000508465 ADAMTS12P58397 1594 aa7.62□□□□□ -1.19
NUP54-206ENST00000508465 USP17L3A6NCW0 530 aa7.61□□□□□ -1.19
NUP54-206ENST00000508465 USP17L4A6NCW7 530 aa7.61□□□□□ -1.19
NUP54-206ENST00000508465 CLDN10P78369 228 aa7.61□□□□□ -1.19
NUP54-206ENST00000508465 TPRNQ4KMQ1 711 aa7.61□□□□□ -1.19
NUP54-206ENST00000508465 PSAPL1Q6NUJ1 521 aa7.61□□□□□ -1.19
NUP54-206ENST00000508465 USP17L2Q6R6M4 530 aa7.61□□□□□ -1.19
NUP54-206ENST00000508465 USP17L1Q7RTZ2 530 aa7.61□□□□□ -1.19
NUP54-206ENST00000508465 DMRTC2Q8IXT2 367 aaPredicted RBP7.61□□□□□ -1.19
NUP54-206ENST00000508465 OGFOD1Q8N543 542 aa7.61□□□□□ -1.19
NUP54-206ENST00000508465 MKRN1Q9UHC7 482 aaKnown RBP7.61□□□□□ -1.19
NUP54-206ENST00000508465 CEP170Q5SW79 1584 aa7.61□□□□□ -1.19
NUP54-206ENST00000508465 NUP160Q12769 1436 aa7.61□□□□□ -1.19
NUP54-206ENST00000508465 ATAD2Q6PL18 1390 aa7.6□□□□□ -1.19
NUP54-206ENST00000508465 ERCC6L2Q5T890 1561 aa7.6□□□□□ -1.19
NUP54-206ENST00000508465 AFF1P51825 1210 aaKnown RBP7.6□□□□□ -1.19
NUP54-206ENST00000508465 SHISA2Q6UWI4 295 aa7.6□□□□□ -1.19
NUP54-206ENST00000508465 FAM9AQ8IZU1 332 aaPredicted RBP7.6□□□□□ -1.19
NUP54-206ENST00000508465 FMR1NBQ8N0W7 255 aaPredicted RBP7.6□□□□□ -1.19
NUP54-206ENST00000508465 STAG2Q8N3U4 1231 aa7.6□□□□□ -1.19
NUP54-206ENST00000508465 TSEN2Q8NCE0 465 aaKnown RBP7.6□□□□□ -1.19
NUP54-206ENST00000508465 DNAJB12Q9NXW2 375 aaKnown RBP7.6□□□□□ -1.19
NUP54-206ENST00000508465 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.6□□□□□ -1.19
NUP54-206ENST00000508465 HYAL3O43820 417 aaPredicted RBP7.59□□□□□ -1.19
NUP54-206ENST00000508465 CCINQ13939 588 aa7.59□□□□□ -1.19
NUP54-206ENST00000508465 GSX2Q9BZM3 304 aa7.59□□□□□ -1.19
NUP54-206ENST00000508465 PRG4Q92954 1404 aaPredicted RBP7.59□□□□□ -1.19
NUP54-206ENST00000508465 ATP9BO43861 1147 aa7.58□□□□□ -1.2
NUP54-206ENST00000508465 EPB42P16452 691 aa7.58□□□□□ -1.2
NUP54-206ENST00000508465 HDGFL1Q5TGJ6 251 aa7.58□□□□□ -1.2
NUP54-206ENST00000508465 SIX5Q8N196 739 aa7.58□□□□□ -1.2
NUP54-206ENST00000508465 DTWD1Q8N5C7 304 aa7.58□□□□□ -1.2
NUP54-206ENST00000508465 NGLY1Q96IV0 654 aa7.58□□□□□ -1.2
NUP54-206ENST00000508465 C2orf49Q9BVC5 232 aaPredicted RBP7.58□□□□□ -1.2
NUP54-206ENST00000508465 IER5Q5VY09 327 aa7.57□□□□□ -1.2
NUP54-206ENST00000508465 MSL1Q68DK7 614 aa7.57□□□□□ -1.2
NUP54-206ENST00000508465 SCG3Q8WXD2 468 aaKnown RBP7.57□□□□□ -1.2
NUP54-206ENST00000508465 ZNF594Q96JF6 807 aaPredicted RBP7.57□□□□□ -1.2
NUP54-206ENST00000508465 C21orf2O43822 256 aa7.56□□□□□ -1.2
NUP54-206ENST00000508465 NFKB1P19838 968 aa7.56□□□□□ -1.2
NUP54-206ENST00000508465 FAM35AQ86V20 835 aa7.56□□□□□ -1.2
NUP54-206ENST00000508465 RTN1Q16799 776 aa7.55□□□□□ -1.2
NUP54-206ENST00000508465 FBXO11Q86XK2 927 aa7.55□□□□□ -1.2
NUP54-206ENST00000508465 KRTAP1-3Q8IUG1 177 aa7.55□□□□□ -1.2
NUP54-206ENST00000508465 WFDC12Q8WWY7 111 aa7.55□□□□□ -1.2
NUP54-206ENST00000508465 POM121Q96HA1 1249 aa7.55□□□□□ -1.2
NUP54-206ENST00000508465 SSBP4Q9BWG4 385 aaPredicted RBP7.55□□□□□ -1.2
NUP54-206ENST00000508465 FRRS1LQ9P0K9 344 aa7.55□□□□□ -1.2
NUP54-206ENST00000508465 POM121CA8CG34 1229 aa7.54□□□□□ -1.2
NUP54-206ENST00000508465 TGFBR3LH3BV60 316 aa7.54□□□□□ -1.2
NUP54-206ENST00000508465 SEC13P55735 322 aa7.54□□□□□ -1.2
NUP54-206ENST00000508465 ILDR2Q71H61 639 aa7.54□□□□□ -1.2
NUP54-206ENST00000508465 KIAA0586Q9BVV6 1533 aa7.53□□□□□ -1.2
NUP54-206ENST00000508465 CPB1P15086 417 aa7.53□□□□□ -1.2
NUP54-206ENST00000508465 UBTFP17480 764 aaKnown RBP7.53□□□□□ -1.2
NUP54-206ENST00000508465 RASA1P20936 1047 aa7.53□□□□□ -1.2
NUP54-206ENST00000508465 ARID4AP29374 1257 aaPredicted RBP7.53□□□□□ -1.2
NUP54-206ENST00000508465 RANGAP1P46060 587 aaPredicted RBP7.53□□□□□ -1.2
NUP54-206ENST00000508465 IREB2P48200 963 aaKnown RBP7.53□□□□□ -1.2
NUP54-206ENST00000508465 ELMSAN1Q6PJG2 1045 aa7.53□□□□□ -1.2
NUP54-206ENST00000508465 IGF2-ASQ6U949 168 aa7.53□□□□□ -1.2
NUP54-206ENST00000508465 WFDC8Q8IUA0 241 aa7.53□□□□□ -1.2
NUP54-206ENST00000508465 ADAMTS19Q8TE59 1207 aa7.53□□□□□ -1.2
NUP54-206ENST00000508465 HINFPQ9BQA5 517 aa7.53□□□□□ -1.2
NUP54-206ENST00000508465 NAGPAQ9UK23 515 aa7.53□□□□□ -1.2
NUP54-206ENST00000508465 RNF112Q9ULX5 631 aa7.53□□□□□ -1.2
NUP54-206ENST00000508465 RAPGEF2Q9Y4G8 1499 aa7.52□□□□□ -1.21
NUP54-206ENST00000508465 MAP3K6O95382 1288 aa7.52□□□□□ -1.21
NUP54-206ENST00000508465 FLIIQ13045 1269 aa7.52□□□□□ -1.21
NUP54-206ENST00000508465 UCN2Q96RP3 112 aa7.52□□□□□ -1.21
NUP54-206ENST00000508465 C11orf16Q9NQ32 467 aa7.52□□□□□ -1.21
NUP54-206ENST00000508465 SHROOM2Q13796 1616 aa7.52□□□□□ -1.21
NUP54-206ENST00000508465 CUL7Q14999 1698 aa7.51□□□□□ -1.21
NUP54-206ENST00000508465 DKK1O94907 266 aa7.51□□□□□ -1.21
NUP54-206ENST00000508465 LARP1Q6PKG0 1096 aaKnown RBP7.51□□□□□ -1.21
NUP54-206ENST00000508465 SLC51AQ86UW1 340 aa7.51□□□□□ -1.21
NUP54-206ENST00000508465 TTC9Q92623 222 aa7.51□□□□□ -1.21
NUP54-206ENST00000508465 NOS3P29474 1203 aa7.5□□□□□ -1.21
NUP54-206ENST00000508465 LCE3BQ5TA77 95 aa7.5□□□□□ -1.21
NUP54-206ENST00000508465 DHX32Q7L7V1 743 aaKnown RBP7.5□□□□□ -1.21
NUP54-206ENST00000508465 TRPM4Q8TD43 1214 aa7.5□□□□□ -1.21
NUP54-206ENST00000508465 LPIN3Q9BQK8 851 aa7.5□□□□□ -1.21
NUP54-206ENST00000508465 DMGDHQ9UI17 866 aaKnown RBP7.5□□□□□ -1.21
NUP54-206ENST00000508465 PTPRGP23470 1445 aa7.5□□□□□ -1.21
NUP54-206ENST00000508465 IDH3AP50213 366 aa7.49□□□□□ -1.21
NUP54-206ENST00000508465 PERM1Q5SV97 790 aa7.49□□□□□ -1.21
NUP54-206ENST00000508465 KRT25Q7Z3Z0 450 aa7.49□□□□□ -1.21
NUP54-206ENST00000508465 KRTAP4-12Q9BQ66 201 aa7.49□□□□□ -1.21
NUP54-206ENST00000508465 RARAP10276 462 aa7.48□□□□□ -1.21
NUP54-206ENST00000508465 IGFBP4P22692 258 aa7.48□□□□□ -1.21
NUP54-206ENST00000508465 INPP5BP32019 993 aa7.48□□□□□ -1.21
NUP54-206ENST00000508465 ARSDP51689 593 aa7.48□□□□□ -1.21
NUP54-206ENST00000508465 GPLD1P80108 840 aa7.48□□□□□ -1.21
NUP54-206ENST00000508465 GRIK5Q16478 980 aa7.48□□□□□ -1.21
NUP54-206ENST00000508465 BCS1LQ9Y276 419 aa7.48□□□□□ -1.21
NUP54-206ENST00000508465 PRXQ9BXM0 1461 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms