RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 PNMA8AQ86V59 439 aaPredicted RBP16.85■□□□□ 0.29
HMGCS1-205ENST00000508319 NIM1KQ8IY84 436 aa16.85■□□□□ 0.29
HMGCS1-205ENST00000508319 C8orf58Q8NAV2 365 aa16.85■□□□□ 0.29
HMGCS1-205ENST00000508319 PHAXQ9H814 394 aaKnown RBP16.85■□□□□ 0.29
HMGCS1-205ENST00000508319 DPP8Q6V1X1 898 aaPredicted RBP16.84■□□□□ 0.29
HMGCS1-205ENST00000508319 SUPT20HQ8NEM7 779 aa16.84■□□□□ 0.29
HMGCS1-205ENST00000508319 VPS33BQ9H267 617 aa16.84■□□□□ 0.29
HMGCS1-205ENST00000508319 CACNB1Q02641 598 aaPredicted RBP16.83■□□□□ 0.28
HMGCS1-205ENST00000508319 GOLGA2Q08379 1002 aa16.83■□□□□ 0.28
HMGCS1-205ENST00000508319 SF3B3Q15393 1217 aaKnown RBP16.83■□□□□ 0.28
HMGCS1-205ENST00000508319 RTL5Q5HYW3 569 aaPredicted RBP16.83■□□□□ 0.28
HMGCS1-205ENST00000508319 TMC4Q7Z404 712 aa16.83■□□□□ 0.28
HMGCS1-205ENST00000508319 LMOD1P29536 600 aaPredicted RBP16.82■□□□□ 0.28
HMGCS1-205ENST00000508319 EPS15P42566 896 aa16.82■□□□□ 0.28
HMGCS1-205ENST00000508319 KIAA2012Q0VF49 1180 aa16.82■□□□□ 0.28
HMGCS1-205ENST00000508319 CCDC27Q2M243 656 aa16.82■□□□□ 0.28
HMGCS1-205ENST00000508319 MAP1SQ66K74 1059 aaPredicted RBP16.82■□□□□ 0.28
HMGCS1-205ENST00000508319 RIC3Q7Z5B4 369 aa16.82■□□□□ 0.28
HMGCS1-205ENST00000508319 MPNDQ8N594 471 aa16.82■□□□□ 0.28
HMGCS1-205ENST00000508319 TSPYL6Q8N831 410 aa16.82■□□□□ 0.28
HMGCS1-205ENST00000508319 CELF1Q92879 486 aaKnown RBP16.82■□□□□ 0.28
HMGCS1-205ENST00000508319 TSR2Q969E8 191 aaKnown RBP16.82■□□□□ 0.28
HMGCS1-205ENST00000508319 CLEC11AQ9Y240 323 aa16.82■□□□□ 0.28
HMGCS1-205ENST00000508319 CNTNAP1P78357 1384 aa16.81■□□□□ 0.28
HMGCS1-205ENST00000508319 IRS4O14654 1257 aaPredicted RBP16.81■□□□□ 0.28
HMGCS1-205ENST00000508319 ZEB1P37275 1124 aaPredicted RBP16.81■□□□□ 0.28
HMGCS1-205ENST00000508319 MKRN1Q9UHC7 482 aaKnown RBP16.81■□□□□ 0.28
HMGCS1-205ENST00000508319 ZNRF3Q9ULT6 936 aa16.81■□□□□ 0.28
HMGCS1-205ENST00000508319 CXCL9Q07325 125 aa16.8■□□□□ 0.28
HMGCS1-205ENST00000508319 CCDC30Q5VVM6 783 aa16.8■□□□□ 0.28
HMGCS1-205ENST00000508319 CNTROBQ8N137 903 aa16.8■□□□□ 0.28
HMGCS1-205ENST00000508319 ZBTB38Q8NAP3 1195 aaPredicted RBP16.8■□□□□ 0.28
HMGCS1-205ENST00000508319 MYD88Q99836 296 aa16.8■□□□□ 0.28
HMGCS1-205ENST00000508319 TMEM88BA6NKF7 163 aa16.79■□□□□ 0.28
HMGCS1-205ENST00000508319 HSPA1AP0DMV8 641 aaKnown RBP16.79■□□□□ 0.28
HMGCS1-205ENST00000508319 HSPA1BP0DMV9 641 aaKnown RBP16.79■□□□□ 0.28
HMGCS1-205ENST00000508319 WWC1Q8IX03 1113 aa16.79■□□□□ 0.28
HMGCS1-205ENST00000508319 GPRC5DQ9NZD1 345 aa16.79■□□□□ 0.28
HMGCS1-205ENST00000508319 YDJCA8MPS7 323 aa16.78■□□□□ 0.28
HMGCS1-205ENST00000508319 CCDC191Q8NCU4 936 aa16.78■□□□□ 0.28
HMGCS1-205ENST00000508319 METTL22Q9BUU2 404 aaPredicted RBP16.78■□□□□ 0.28
HMGCS1-205ENST00000508319 TRPM7Q96QT4 1865 aa16.78■□□□□ 0.28
HMGCS1-205ENST00000508319 CDHR2Q9BYE9 1310 aa16.77■□□□□ 0.28
HMGCS1-205ENST00000508319 MYH3P11055 1940 aa16.77■□□□□ 0.28
HMGCS1-205ENST00000508319 PCCAP05165 728 aaPredicted RBP16.77■□□□□ 0.28
HMGCS1-205ENST00000508319 GMPSP49915 693 aaPredicted RBP16.77■□□□□ 0.28
HMGCS1-205ENST00000508319 COL13A1Q5TAT6 717 aaPredicted RBP16.77■□□□□ 0.28
HMGCS1-205ENST00000508319 CIAPIN1Q6FI81 312 aa16.77■□□□□ 0.28
HMGCS1-205ENST00000508319 USP50Q70EL3 339 aaPredicted RBP16.77■□□□□ 0.28
HMGCS1-205ENST00000508319 CHMP4AQ9BY43 222 aa16.77■□□□□ 0.28
HMGCS1-205ENST00000508319 MRS2Q9HD23 443 aa16.77■□□□□ 0.28
HMGCS1-205ENST00000508319 CWC25Q9NXE8 425 aaPredicted RBP16.77■□□□□ 0.28
HMGCS1-205ENST00000508319 IL16Q14005 1332 aa16.76■□□□□ 0.27
HMGCS1-205ENST00000508319 DDX58O95786 925 aaKnown RBP16.76■□□□□ 0.27
HMGCS1-205ENST00000508319 NCBP3Q53F19 620 aaKnown RBP16.76■□□□□ 0.27
HMGCS1-205ENST00000508319 ADARB2Q9NS39 739 aaKnown RBP16.76■□□□□ 0.27
HMGCS1-205ENST00000508319 ZNF316A6NFI3 1004 aaPredicted RBP16.75■□□□□ 0.27
HMGCS1-205ENST00000508319 RAD17O75943 681 aa16.75■□□□□ 0.27
HMGCS1-205ENST00000508319 RPS8P62241 208 aaKnown RBP16.75■□□□□ 0.27
HMGCS1-205ENST00000508319 GPSM2P81274 684 aa16.75■□□□□ 0.27
HMGCS1-205ENST00000508319 SEC31BQ9NQW1 1179 aa16.75■□□□□ 0.27
HMGCS1-205ENST00000508319 POLLQ9UGP5 575 aa16.75■□□□□ 0.27
HMGCS1-205ENST00000508319 NSFL1CQ9UNZ2 370 aaKnown RBP16.75■□□□□ 0.27
HMGCS1-205ENST00000508319 MAP3K2Q9Y2U5 619 aa16.75■□□□□ 0.27
HMGCS1-205ENST00000508319 SCN9AQ15858 1988 aa16.75■□□□□ 0.27
HMGCS1-205ENST00000508319 THSD7BQ9C0I4 1608 aa16.74■□□□□ 0.27
HMGCS1-205ENST00000508319 PI4KAP2A4QPH2 592 aa16.74■□□□□ 0.27
HMGCS1-205ENST00000508319 ANP32CO43423 234 aa16.74■□□□□ 0.27
HMGCS1-205ENST00000508319 IGKV5-2P06315 115 aa16.74■□□□□ 0.27
HMGCS1-205ENST00000508319 HSP90B1P14625 803 aaKnown RBP16.74■□□□□ 0.27
HMGCS1-205ENST00000508319 VEGFBP49765 207 aa16.74■□□□□ 0.27
HMGCS1-205ENST00000508319 FMR1Q06787 632 aaKnown RBP eCLIP16.74■□□□□ 0.278e-7■□□□□ 8.8
HMGCS1-205ENST00000508319 WASHC4Q2M389 1173 aa16.74■□□□□ 0.27
HMGCS1-205ENST00000508319 TWISTNBQ3B726 338 aaPredicted RBP16.74■□□□□ 0.27
HMGCS1-205ENST00000508319 KSR2Q6VAB6 950 aa16.74■□□□□ 0.27
HMGCS1-205ENST00000508319 PI4KAP1Q8N8J0 262 aa16.74■□□□□ 0.27
HMGCS1-205ENST00000508319 JARID2Q92833 1246 aaPredicted RBP16.74■□□□□ 0.27
HMGCS1-205ENST00000508319 STK31Q9BXU1 1019 aa16.74■□□□□ 0.27
HMGCS1-205ENST00000508319 CACNA1FO60840 1977 aa16.74■□□□□ 0.27
HMGCS1-205ENST00000508319 FANCIQ9NVI1 1328 aa16.73■□□□□ 0.27
HMGCS1-205ENST00000508319 SPEF2Q9C093 1822 aa16.73■□□□□ 0.27
HMGCS1-205ENST00000508319 RASSF10A6NK89 507 aa16.73■□□□□ 0.27
HMGCS1-205ENST00000508319 PDE8AO60658 829 aa16.73■□□□□ 0.27
HMGCS1-205ENST00000508319 TNIP1Q15025 636 aa16.73■□□□□ 0.27
HMGCS1-205ENST00000508319 CCDC152Q4G0S7 254 aa16.73■□□□□ 0.27
HMGCS1-205ENST00000508319 G2E3Q7L622 706 aa16.73■□□□□ 0.27
HMGCS1-205ENST00000508319 DBNDD1Q9H9R9 158 aa16.73■□□□□ 0.27
HMGCS1-205ENST00000508319 SHTN1A0MZ66 631 aa16.72■□□□□ 0.27
HMGCS1-205ENST00000508319 C6orf229H3BNL8 230 aa16.72■□□□□ 0.27
HMGCS1-205ENST00000508319 TRAF5O00463 557 aa16.72■□□□□ 0.27
HMGCS1-205ENST00000508319 TBC1D16Q8TBP0 767 aa16.72■□□□□ 0.27
HMGCS1-205ENST00000508319 GPR101Q96P66 508 aaPredicted RBP16.72■□□□□ 0.27
HMGCS1-205ENST00000508319 BCL2L13Q9BXK5 485 aa16.72■□□□□ 0.27
HMGCS1-205ENST00000508319 PODXL2Q9NZ53 605 aa16.72■□□□□ 0.27
HMGCS1-205ENST00000508319 RTL9Q8NET4 1388 aa16.72■□□□□ 0.27
HMGCS1-205ENST00000508319 PSME4Q14997 1843 aa16.72■□□□□ 0.27
HMGCS1-205ENST00000508319 PSMD14O00487 310 aa16.71■□□□□ 0.27
HMGCS1-205ENST00000508319 RIMBP2O15034 1052 aa16.71■□□□□ 0.27
HMGCS1-205ENST00000508319 TRPM4Q8TD43 1214 aa16.71■□□□□ 0.27
HMGCS1-205ENST00000508319 CCDC85AQ96PX6 553 aaPredicted RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms