RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 ERFEQ4G0M1 354 aa10.63□□□□□ -0.71
PDGFC-205ENST00000506880 C2CD5Q86YS7 1000 aa10.63□□□□□ -0.71
PDGFC-205ENST00000506880 LRRC37AA6NMS7 1700 aa10.63□□□□□ -0.71
PDGFC-205ENST00000506880 ABCC12Q96J65 1359 aa10.63□□□□□ -0.71
PDGFC-205ENST00000506880 FER1L6Q2WGJ9 1857 aa10.62□□□□□ -0.71
PDGFC-205ENST00000506880 F6X3S4 739 aa10.62□□□□□ -0.71
PDGFC-205ENST00000506880 BCAR3O75815 825 aa10.62□□□□□ -0.71
PDGFC-205ENST00000506880 UBTFL1P0CB47 393 aaPredicted RBP10.62□□□□□ -0.71
PDGFC-205ENST00000506880 KCNA3P22001 575 aa10.62□□□□□ -0.71
PDGFC-205ENST00000506880 MTX1Q13505 466 aa10.62□□□□□ -0.71
PDGFC-205ENST00000506880 GRAPQ13588 217 aa10.62□□□□□ -0.71
PDGFC-205ENST00000506880 SLC4A10Q6U841 1118 aa10.62□□□□□ -0.71
PDGFC-205ENST00000506880 RTKN2Q8IZC4 609 aa10.62□□□□□ -0.71
PDGFC-205ENST00000506880 GRAPLQ8TC17 118 aaPredicted RBP10.62□□□□□ -0.71
PDGFC-205ENST00000506880 FAM89AQ96GI7 184 aa10.62□□□□□ -0.71
PDGFC-205ENST00000506880 BCL2L13Q9BXK5 485 aa10.62□□□□□ -0.71
PDGFC-205ENST00000506880 USP44Q9H0E7 712 aa10.62□□□□□ -0.71
PDGFC-205ENST00000506880 DICER1Q9UPY3 1922 aaKnown RBP10.62□□□□□ -0.71
PDGFC-205ENST00000506880 TNRC6CQ9HCJ0 1690 aaKnown RBP10.61□□□□□ -0.71
PDGFC-205ENST00000506880 TCERG1O14776 1098 aaKnown RBP10.61□□□□□ -0.71
PDGFC-205ENST00000506880 DPEP1P16444 411 aa10.61□□□□□ -0.71
PDGFC-205ENST00000506880 CWF19L2Q2TBE0 894 aaKnown RBP10.61□□□□□ -0.71
PDGFC-205ENST00000506880 UBE3BQ7Z3V4 1068 aa10.61□□□□□ -0.71
PDGFC-205ENST00000506880 SUPT20HQ8NEM7 779 aa10.61□□□□□ -0.71
PDGFC-205ENST00000506880 ZBTB22O15209 634 aa10.6□□□□□ -0.71
PDGFC-205ENST00000506880 MVPQ14764 893 aaKnown RBP10.6□□□□□ -0.71
PDGFC-205ENST00000506880 NUTM1Q86Y26 1132 aa10.6□□□□□ -0.71
PDGFC-205ENST00000506880 SP8Q8IXZ3 490 aa10.6□□□□□ -0.71
PDGFC-205ENST00000506880 TTLL11Q8NHH1 800 aa10.6□□□□□ -0.71
PDGFC-205ENST00000506880 FRAT1Q92837 279 aaPredicted RBP10.6□□□□□ -0.71
PDGFC-205ENST00000506880 PSMD1Q99460 953 aa10.6□□□□□ -0.71
PDGFC-205ENST00000506880 SLX4Q8IY92 1834 aa10.59□□□□□ -0.71
PDGFC-205ENST00000506880 GNAI2P04899 355 aa10.59□□□□□ -0.71
PDGFC-205ENST00000506880 RPS8P62241 208 aaKnown RBP10.59□□□□□ -0.71
PDGFC-205ENST00000506880 IFIT5Q13325 482 aaKnown RBP10.59□□□□□ -0.71
PDGFC-205ENST00000506880 CCDC57Q2TAC2 916 aa10.59□□□□□ -0.71
PDGFC-205ENST00000506880 CCDC93Q567U6 631 aa10.59□□□□□ -0.71
PDGFC-205ENST00000506880 C7orf43Q8WVR3 580 aa10.59□□□□□ -0.71
PDGFC-205ENST00000506880 BSDC1Q9NW68 430 aaPredicted RBP10.59□□□□□ -0.71
PDGFC-205ENST00000506880 ATP6V0A2Q9Y487 856 aa10.59□□□□□ -0.71
PDGFC-205ENST00000506880 SBF1O95248 1867 aa10.58□□□□□ -0.72
PDGFC-205ENST00000506880 CACNA1SQ13698 1873 aa10.58□□□□□ -0.72
PDGFC-205ENST00000506880 A0A0G2JLW4 131 aa10.58□□□□□ -0.72
PDGFC-205ENST00000506880 ANKRD18BA2A2Z9 1011 aa10.58□□□□□ -0.72
PDGFC-205ENST00000506880 CENPBP07199 599 aaPredicted RBP10.58□□□□□ -0.72
PDGFC-205ENST00000506880 HCLS1P14317 486 aaPredicted RBP10.58□□□□□ -0.72
PDGFC-205ENST00000506880 IGHMBP2P38935 993 aaKnown RBP10.58□□□□□ -0.72
PDGFC-205ENST00000506880 RRP1P56182 461 aaKnown RBP10.58□□□□□ -0.72
PDGFC-205ENST00000506880 PRPF40BQ6NWY9 871 aaKnown RBP10.58□□□□□ -0.72
PDGFC-205ENST00000506880 ANKRD18AQ8IVF6 992 aa10.58□□□□□ -0.72
PDGFC-205ENST00000506880 ZNF622Q969S3 477 aaKnown RBP eCLIP10.58□□□□□ -0.72
PDGFC-205ENST00000506880 RTFDC1Q9BY42 306 aaPredicted RBP10.58□□□□□ -0.72
PDGFC-205ENST00000506880 ANKRD2Q9GZV1 360 aa10.58□□□□□ -0.72
PDGFC-205ENST00000506880 PODXL2Q9NZ53 605 aa10.58□□□□□ -0.72
PDGFC-205ENST00000506880 ZBTB7BO15156 539 aaPredicted RBP10.57□□□□□ -0.72
PDGFC-205ENST00000506880 MMP14P50281 582 aa10.57□□□□□ -0.72
PDGFC-205ENST00000506880 FOXO4P98177 505 aa10.57□□□□□ -0.72
PDGFC-205ENST00000506880 RPAP2Q8IXW5 612 aaPredicted RBP10.57□□□□□ -0.72
PDGFC-205ENST00000506880 NLGN2Q8NFZ4 835 aa10.57□□□□□ -0.72
PDGFC-205ENST00000506880 YTHDC1Q96MU7 727 aaKnown RBP10.57□□□□□ -0.72
PDGFC-205ENST00000506880 FAM177BA6PVY3 158 aa10.56□□□□□ -0.72
PDGFC-205ENST00000506880 PPEF1O14829 653 aaPredicted RBP10.56□□□□□ -0.72
PDGFC-205ENST00000506880 HMMRO75330 724 aa10.56□□□□□ -0.72
PDGFC-205ENST00000506880 CIAO1O76071 339 aa10.56□□□□□ -0.72
PDGFC-205ENST00000506880 NBPF7P0C2Y1 421 aaPredicted RBP10.56□□□□□ -0.72
PDGFC-205ENST00000506880 GPR162Q16538 588 aa10.56□□□□□ -0.72
PDGFC-205ENST00000506880 HSP90AB4PQ58FF6 505 aa10.56□□□□□ -0.72
PDGFC-205ENST00000506880 ITPRIPQ8IWB1 547 aa10.56□□□□□ -0.72
PDGFC-205ENST00000506880 TMEM57Q8N5G2 664 aa10.56□□□□□ -0.72
PDGFC-205ENST00000506880 MPHOSPH8Q99549 860 aa10.56□□□□□ -0.72
PDGFC-205ENST00000506880 LEMD3Q9Y2U8 911 aa10.56□□□□□ -0.72
PDGFC-205ENST00000506880 SNED1Q8TER0 1413 aa10.56□□□□□ -0.72
PDGFC-205ENST00000506880 MROH5Q6ZUA9 1318 aa10.56□□□□□ -0.72
PDGFC-205ENST00000506880 LTBP1Q14766 1721 aa10.55□□□□□ -0.72
PDGFC-205ENST00000506880 IGSF3O75054 1194 aa10.55□□□□□ -0.72
PDGFC-205ENST00000506880 ITGA6P23229 1130 aa10.55□□□□□ -0.72
PDGFC-205ENST00000506880 CHRNA5P30532 468 aa10.55□□□□□ -0.72
PDGFC-205ENST00000506880 FKBP4Q02790 459 aaKnown RBP eCLIP10.55□□□□□ -0.72
PDGFC-205ENST00000506880 LMBR1LQ6UX01 489 aa10.55□□□□□ -0.72
PDGFC-205ENST00000506880 C15orf52Q6ZUT6 534 aaKnown RBP10.55□□□□□ -0.72
PDGFC-205ENST00000506880 KLHL34Q8N239 644 aa10.55□□□□□ -0.72
PDGFC-205ENST00000506880 EYA3Q99504 573 aa10.55□□□□□ -0.72
PDGFC-205ENST00000506880 COPRSQ9NQ92 184 aa10.55□□□□□ -0.72
PDGFC-205ENST00000506880 ZBTB40Q9NUA8 1239 aa10.55□□□□□ -0.72
PDGFC-205ENST00000506880 BCS1LQ9Y276 419 aa10.55□□□□□ -0.72
PDGFC-205ENST00000506880 GOLGB1Q14789 3259 aaKnown RBP10.55□□□□□ -0.72
PDGFC-205ENST00000506880 XDHP47989 1333 aa10.55□□□□□ -0.72
PDGFC-205ENST00000506880 LMNB1P20700 586 aa10.54□□□□□ -0.72
PDGFC-205ENST00000506880 ATP2B4P23634 1241 aa10.54□□□□□ -0.72
PDGFC-205ENST00000506880 TAF7LQ5H9L4 462 aa10.54□□□□□ -0.72
PDGFC-205ENST00000506880 KAZALD1Q96I82 304 aa10.54□□□□□ -0.72
PDGFC-205ENST00000506880 SUCLG2Q96I99 432 aa10.54□□□□□ -0.72
PDGFC-205ENST00000506880 TAOK3Q9H2K8 898 aa10.54□□□□□ -0.72
PDGFC-205ENST00000506880 BICC1Q9H694 974 aaKnown RBP10.54□□□□□ -0.72
PDGFC-205ENST00000506880 GREM2Q9H772 168 aa10.54□□□□□ -0.72
PDGFC-205ENST00000506880 CCDC88AQ3V6T2 1871 aa10.53□□□□□ -0.72
PDGFC-205ENST00000506880 KCNA4P22459 653 aa10.53□□□□□ -0.72
PDGFC-205ENST00000506880 ATP8B2P98198 1209 aa10.53□□□□□ -0.72
PDGFC-205ENST00000506880 ERICH6BQ5W0A0 696 aa10.53□□□□□ -0.72
PDGFC-205ENST00000506880 ERC1Q8IUD2 1116 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms