RNA–Protein interactions for RNA: ENST00000505937.2

PCDH1-205, Transcript of protocadherin 1, human

TSL 5

Gene PCDH1, Length 825 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH1-205	ENST00000505937	PTPRC	P08575	1304 aa		19.66	■□□□□ 0.74
PCDH1-205	ENST00000505937	CACNA1S	Q13698	1873 aa		19.65	■□□□□ 0.74
PCDH1-205	ENST00000505937	SLC4A10	Q6U841	1118 aa		19.65	■□□□□ 0.74
PCDH1-205	ENST00000505937	UBE3B	Q7Z3V4	1068 aa		19.65	■□□□□ 0.74
PCDH1-205	ENST00000505937	PRELP	P51888	382 aa		19.64	■□□□□ 0.73
PCDH1-205	ENST00000505937	DPY19L2	Q6NUT2	758 aa		19.64	■□□□□ 0.73
PCDH1-205	ENST00000505937	SP8	Q8IXZ3	490 aa		19.64	■□□□□ 0.73
PCDH1-205	ENST00000505937	ZNF277	Q9NRM2	450 aa	Predicted RBP	19.64	■□□□□ 0.73
PCDH1-205	ENST00000505937	FER1L6	Q2WGJ9	1857 aa		19.63	■□□□□ 0.73
PCDH1-205	ENST00000505937		H7C1W4	665 aa		19.63	■□□□□ 0.73
PCDH1-205	ENST00000505937	CTSW	P56202	376 aa		19.63	■□□□□ 0.73
PCDH1-205	ENST00000505937	BEND3	Q5T5X7	828 aa		19.63	■□□□□ 0.73
PCDH1-205	ENST00000505937	SUPT20H	Q8NEM7	779 aa		19.63	■□□□□ 0.73
PCDH1-205	ENST00000505937	BCL2L13	Q9BXK5	485 aa		19.63	■□□□□ 0.73
PCDH1-205	ENST00000505937	ALDH1L1	O75891	902 aa		19.62	■□□□□ 0.73
PCDH1-205	ENST00000505937	IARS	P41252	1262 aa	Known RBP	19.62	■□□□□ 0.73
PCDH1-205	ENST00000505937	RPS8	P62241	208 aa	Known RBP	19.62	■□□□□ 0.73
PCDH1-205	ENST00000505937	DPP8	Q6V1X1	898 aa	Predicted RBP	19.62	■□□□□ 0.73
PCDH1-205	ENST00000505937	JDP2	Q8WYK2	163 aa		19.62	■□□□□ 0.73
PCDH1-205	ENST00000505937	SRCIN1	Q9C0H9	1055 aa		19.62	■□□□□ 0.73
PCDH1-205	ENST00000505937	MPND	Q8N594	471 aa		19.61	■□□□□ 0.73
PCDH1-205	ENST00000505937	CELF1	Q92879	486 aa	Known RBP	19.61	■□□□□ 0.73
PCDH1-205	ENST00000505937	CDC5L	Q99459	802 aa	Known RBP	19.61	■□□□□ 0.73
PCDH1-205	ENST00000505937	C9orf78	Q9NZ63	289 aa	Predicted RBP	19.61	■□□□□ 0.73
PCDH1-205	ENST00000505937	DDX60	Q8IY21	1712 aa	Known RBP	19.61	■□□□□ 0.73
PCDH1-205	ENST00000505937	SBF1	O95248	1867 aa		19.6	■□□□□ 0.73
PCDH1-205	ENST00000505937	ZBED9	Q6R2W3	1325 aa		19.6	■□□□□ 0.73
PCDH1-205	ENST00000505937	GLTPD2	A6NH11	291 aa		19.6	■□□□□ 0.73
PCDH1-205	ENST00000505937	CCDC85A	Q96PX6	553 aa	Predicted RBP	19.6	■□□□□ 0.73
PCDH1-205	ENST00000505937	PLA2G12B	Q9BX93	195 aa		19.6	■□□□□ 0.73
PCDH1-205	ENST00000505937	GRM8	O00222	908 aa		19.59	■□□□□ 0.73
PCDH1-205	ENST00000505937	ANKRD18A	Q8IVF6	992 aa		19.59	■□□□□ 0.73
PCDH1-205	ENST00000505937	LARGE2	Q8N3Y3	721 aa		19.59	■□□□□ 0.73
PCDH1-205	ENST00000505937	VPS33B	Q9H267	617 aa		19.59	■□□□□ 0.73
PCDH1-205	ENST00000505937	SEC31B	Q9NQW1	1179 aa		19.59	■□□□□ 0.73
PCDH1-205	ENST00000505937	LAMB2	P55268	1798 aa		19.59	■□□□□ 0.73
PCDH1-205	ENST00000505937	TTLL11	Q8NHH1	800 aa		19.58	■□□□□ 0.72
PCDH1-205	ENST00000505937	SNED1	Q8TER0	1413 aa		19.58	■□□□□ 0.72
PCDH1-205	ENST00000505937	PPIP5K2	O43314	1243 aa		19.57	■□□□□ 0.72
PCDH1-205	ENST00000505937	RARS	P54136	660 aa	Known RBP	19.57	■□□□□ 0.72
PCDH1-205	ENST00000505937	BRPF1	P55201	1214 aa	Predicted RBP	19.57	■□□□□ 0.72
PCDH1-205	ENST00000505937	CASP7	P55210	303 aa		19.57	■□□□□ 0.72
PCDH1-205	ENST00000505937	C16orf71	Q8IYS4	520 aa	Predicted RBP	19.57	■□□□□ 0.72
PCDH1-205	ENST00000505937	NMRK2	Q9NPI5	230 aa		19.57	■□□□□ 0.72
PCDH1-205	ENST00000505937	NSFL1C	Q9UNZ2	370 aa	Known RBP	19.57	■□□□□ 0.72
PCDH1-205	ENST00000505937	RTL9	Q8NET4	1388 aa		19.57	■□□□□ 0.72
PCDH1-205	ENST00000505937	KIF16B	Q96L93	1317 aa		19.56	■□□□□ 0.72
PCDH1-205	ENST00000505937	NIM1K	Q8IY84	436 aa		19.56	■□□□□ 0.72
PCDH1-205	ENST00000505937	RTFDC1	Q9BY42	306 aa	Predicted RBP	19.56	■□□□□ 0.72
PCDH1-205	ENST00000505937	API5	Q9BZZ5	524 aa	Known RBP	19.56	■□□□□ 0.72
PCDH1-205	ENST00000505937	GREM2	Q9H772	168 aa		19.56	■□□□□ 0.72
PCDH1-205	ENST00000505937	IGHMBP2	P38935	993 aa	Known RBP	19.55	■□□□□ 0.72
PCDH1-205	ENST00000505937	EIF6	P56537	245 aa	Known RBP	19.55	■□□□□ 0.72
PCDH1-205	ENST00000505937	KIF3C	O14782	793 aa		19.54	■□□□□ 0.72
PCDH1-205	ENST00000505937	VEGFA	P15692	232 aa	Predicted RBP	19.54	■□□□□ 0.72
PCDH1-205	ENST00000505937	SLC51A	Q86UW1	340 aa		19.54	■□□□□ 0.72
PCDH1-205	ENST00000505937	EYA3	Q99504	573 aa		19.54	■□□□□ 0.72
PCDH1-205	ENST00000505937	RRAGC	Q9HB90	399 aa		19.54	■□□□□ 0.72
PCDH1-205	ENST00000505937	ANKIB1	Q9P2G1	1089 aa		19.54	■□□□□ 0.72
PCDH1-205	ENST00000505937	NOB1	Q9ULX3	412 aa	Known RBP	19.54	■□□□□ 0.72
PCDH1-205	ENST00000505937	CHMP3	Q9Y3E7	222 aa		19.54	■□□□□ 0.72
PCDH1-205	ENST00000505937	TIAM2	Q8IVF5	1701 aa		19.54	■□□□□ 0.72
PCDH1-205	ENST00000505937	C6orf229	H3BNL8	230 aa		19.53	■□□□□ 0.72
PCDH1-205	ENST00000505937	FZD9	O00144	591 aa		19.53	■□□□□ 0.72
PCDH1-205	ENST00000505937	IPO8	O15397	1037 aa	Known RBP	19.53	■□□□□ 0.72
PCDH1-205	ENST00000505937	CSF1R	P07333	972 aa		19.53	■□□□□ 0.72
PCDH1-205	ENST00000505937	ITGA6	P23229	1130 aa		19.53	■□□□□ 0.72
PCDH1-205	ENST00000505937	C1QTNF8	P60827	252 aa		19.53	■□□□□ 0.72
PCDH1-205	ENST00000505937	AOC3	Q16853	763 aa		19.53	■□□□□ 0.72
PCDH1-205	ENST00000505937	FAM161A	Q3B820	660 aa		19.53	■□□□□ 0.72
PCDH1-205	ENST00000505937	CCDC88A	Q3V6T2	1871 aa		19.53	■□□□□ 0.72
PCDH1-205	ENST00000505937	ANKRD18B	A2A2Z9	1011 aa		19.52	■□□□□ 0.72
PCDH1-205	ENST00000505937	CCT4	P50991	539 aa	Known RBP	19.52	■□□□□ 0.72
PCDH1-205	ENST00000505937	KIAA2012	Q0VF49	1180 aa		19.52	■□□□□ 0.72
PCDH1-205	ENST00000505937	MPHOSPH8	Q99549	860 aa		19.52	■□□□□ 0.72
PCDH1-205	ENST00000505937	BSDC1	Q9NW68	430 aa	Predicted RBP	19.52	■□□□□ 0.72
PCDH1-205	ENST00000505937	DICER1	Q9UPY3	1922 aa	Known RBP	19.52	■□□□□ 0.72
PCDH1-205	ENST00000505937	DDN	O94850	711 aa	Predicted RBP	19.51	■□□□□ 0.71
PCDH1-205	ENST00000505937	GPSM2	P81274	684 aa		19.51	■□□□□ 0.71
PCDH1-205	ENST00000505937	IFIT5	Q13325	482 aa	Known RBP	19.51	■□□□□ 0.71
PCDH1-205	ENST00000505937	WASHC4	Q2M389	1173 aa		19.51	■□□□□ 0.71
PCDH1-205	ENST00000505937	ARHGAP45	Q92619	1136 aa		19.51	■□□□□ 0.71
PCDH1-205	ENST00000505937	GGA1	Q9UJY5	639 aa		19.51	■□□□□ 0.71
PCDH1-205	ENST00000505937	XDH	P47989	1333 aa		19.51	■□□□□ 0.71
PCDH1-205	ENST00000505937	IQCA1L	A6NCM1	817 aa		19.5	■□□□□ 0.71
PCDH1-205	ENST00000505937	TOMM70	O94826	608 aa		19.5	■□□□□ 0.71
PCDH1-205	ENST00000505937	UFL1	O94874	794 aa		19.5	■□□□□ 0.71
PCDH1-205	ENST00000505937	CCDC57	Q2TAC2	916 aa		19.5	■□□□□ 0.71
PCDH1-205	ENST00000505937	TAF7L	Q5H9L4	462 aa		19.5	■□□□□ 0.71
PCDH1-205	ENST00000505937	LMBR1L	Q6UX01	489 aa		19.5	■□□□□ 0.71
PCDH1-205	ENST00000505937	PODXL2	Q9NZ53	605 aa		19.5	■□□□□ 0.71
PCDH1-205	ENST00000505937	ZNF541	Q9H0D2	1346 aa		19.5	■□□□□ 0.71
PCDH1-205	ENST00000505937	FOXO4	P98177	505 aa		19.49	■□□□□ 0.71
PCDH1-205	ENST00000505937	GPC2	Q8N158	579 aa		19.49	■□□□□ 0.71
PCDH1-205	ENST00000505937	TBC1D16	Q8TBP0	767 aa		19.49	■□□□□ 0.71
PCDH1-205	ENST00000505937	ZNRF3	Q9ULT6	936 aa		19.49	■□□□□ 0.71
PCDH1-205	ENST00000505937	UTY	O14607	1347 aa		19.49	■□□□□ 0.71
PCDH1-205	ENST00000505937	LRRC37A	A6NMS7	1700 aa		19.48	■□□□□ 0.71
PCDH1-205	ENST00000505937	TAF1	P21675	1872 aa		19.48	■□□□□ 0.71
PCDH1-205	ENST00000505937		G3V3G9	751 aa		19.48	■□□□□ 0.71

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