RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 STIM1Q13586 685 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 Q6ZUG5 572 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 CDK5RAP3Q96JB5 506 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 METTL22Q9BUU2 404 aaPredicted RBP12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 USP16Q9Y5T5 823 aa12.55□□□□□ -0.4
LIMCH1-205ENST00000503057 PRIM1P49642 420 aaKnown RBP12.54□□□□□ -0.4
LIMCH1-205ENST00000503057 NBPF6Q5VWK0 638 aa12.54□□□□□ -0.4
LIMCH1-205ENST00000503057 NBPF4Q96M43 638 aa12.54□□□□□ -0.4
LIMCH1-205ENST00000503057 TULP4Q9NRJ4 1543 aa12.54□□□□□ -0.4
LIMCH1-205ENST00000503057 CPSF1Q10570 1443 aaKnown RBP12.54□□□□□ -0.4
LIMCH1-205ENST00000503057 SGSM2O43147 1006 aa12.54□□□□□ -0.4
LIMCH1-205ENST00000503057 TFCP2Q12800 502 aa12.54□□□□□ -0.4
LIMCH1-205ENST00000503057 SNRKQ9NRH2 765 aa12.54□□□□□ -0.4
LIMCH1-205ENST00000503057 IGSF1Q8N6C5 1336 aa12.54□□□□□ -0.4
LIMCH1-205ENST00000503057 HCLS1P14317 486 aaPredicted RBP12.53□□□□□ -0.4
LIMCH1-205ENST00000503057 IL2RBP14784 551 aa12.53□□□□□ -0.4
LIMCH1-205ENST00000503057 IFIT3O14879 490 aaKnown RBP12.53□□□□□ -0.4
LIMCH1-205ENST00000503057 DNM1Q05193 864 aaKnown RBP12.53□□□□□ -0.4
LIMCH1-205ENST00000503057 GIMAP6Q6P9H5 292 aa12.53□□□□□ -0.4
LIMCH1-205ENST00000503057 SNX14Q9Y5W7 946 aa12.53□□□□□ -0.4
LIMCH1-205ENST00000503057 IBTKQ9P2D0 1353 aaPredicted RBP12.53□□□□□ -0.4
LIMCH1-205ENST00000503057 SLC52A2Q9HAB3 445 aa12.53□□□□□ -0.4
LIMCH1-205ENST00000503057 ORC3Q9UBD5 711 aaPredicted RBP12.53□□□□□ -0.4
LIMCH1-205ENST00000503057 CEP89Q96ST8 783 aa12.53□□□□□ -0.4
LIMCH1-205ENST00000503057 IL17REQ8NFR9 667 aa12.52□□□□□ -0.4
LIMCH1-205ENST00000503057 SSH3Q8TE77 659 aa12.52□□□□□ -0.4
LIMCH1-205ENST00000503057 RNF113AO15541 343 aaKnown RBP12.52□□□□□ -0.4
LIMCH1-205ENST00000503057 METAP2P50579 478 aaKnown RBP eCLIP12.52□□□□□ -0.4
LIMCH1-205ENST00000503057 PLBD2Q8NHP8 589 aa12.52□□□□□ -0.4
LIMCH1-205ENST00000503057 MINDY4BA8MYZ0 360 aa12.52□□□□□ -0.41
LIMCH1-205ENST00000503057 NBPF7P0C2Y1 421 aaPredicted RBP12.52□□□□□ -0.41
LIMCH1-205ENST00000503057 ZNF165P49910 485 aa12.52□□□□□ -0.41
LIMCH1-205ENST00000503057 HAND2P61296 217 aa12.52□□□□□ -0.41
LIMCH1-205ENST00000503057 ATP2B3Q16720 1220 aa12.52□□□□□ -0.41
LIMCH1-205ENST00000503057 SOGA3Q5TF21 947 aa12.52□□□□□ -0.41
LIMCH1-205ENST00000503057 TCEAL9Q9UHQ7 104 aa12.52□□□□□ -0.41
LIMCH1-205ENST00000503057 KDRP35968 1356 aa12.52□□□□□ -0.41
LIMCH1-205ENST00000503057 SFPQP23246 707 aaKnown RBP eCLIP12.52□□□□□ -0.41
LIMCH1-205ENST00000503057 BICDL1Q6ZP65 573 aa12.52□□□□□ -0.41
LIMCH1-205ENST00000503057 ZC3H13Q5T200 1668 aaKnown RBP12.52□□□□□ -0.41
LIMCH1-205ENST00000503057 HSPA4P34932 840 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 IARSP41252 1262 aaKnown RBP12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 TMEM67Q5HYA8 995 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 TCEANC2Q96MN5 208 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 HELLSQ9NRZ9 838 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 PRR36Q9H6K5 1346 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 CFAP100Q494V2 611 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 IQCA1Q86XH1 822 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 CDC5LQ99459 802 aaKnown RBP12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 NEURL4Q96JN8 1562 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 GSDMDP57764 484 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 FAM200AQ8TCP9 573 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 ZNF287Q9HBT7 754 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 SYT1P21579 422 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 EPS15P42566 896 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 USP44Q9H0E7 712 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 CTDP1Q9Y5B0 961 aaPredicted RBP12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 KLF18A0A0U1RQI7 1052 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 CABLES1Q8TDN4 633 aa12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 BCL11BQ9C0K0 894 aaPredicted RBP12.51□□□□□ -0.41
LIMCH1-205ENST00000503057 TNNI3KQ59H18 835 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 ORAI2Q96SN7 254 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 FPGT-TNNI3KV9GXZ4 949 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 PNPLA6Q8IY17 1366 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 RPS6KB1P23443 525 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 ZNF445P59923 1031 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 MFSD6Q6ZSS7 791 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 ZNHIT6Q9NWK9 470 aaKnown RBP12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 NRXN1Q9ULB1 1477 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 PTPN14Q15678 1187 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 KCNG4Q8TDN1 519 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 ERCC4Q92889 916 aaPredicted RBP12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 ZPR1O75312 459 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 CCDC152Q4G0S7 254 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 SUCLG2Q96I99 432 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 OSBPL3Q9H4L5 887 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 NEXMIFQ5QGS0 1516 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 DIP2CQ9Y2E4 1556 aa12.5□□□□□ -0.41
LIMCH1-205ENST00000503057 SLC27A2O14975 620 aa12.49□□□□□ -0.41
LIMCH1-205ENST00000503057 DHX32Q7L7V1 743 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-205ENST00000503057 CTCFLQ8NI51 663 aaPredicted RBP12.49□□□□□ -0.41
LIMCH1-205ENST00000503057 ZKSCAN5Q9Y2L8 839 aa12.49□□□□□ -0.41
LIMCH1-205ENST00000503057 NAP1L1P55209 391 aaKnown RBP12.49□□□□□ -0.41
LIMCH1-205ENST00000503057 CNNM3Q8NE01 707 aa12.49□□□□□ -0.41
LIMCH1-205ENST00000503057 LRRC2Q9BYS8 371 aa12.49□□□□□ -0.41
LIMCH1-205ENST00000503057 KRT23Q9C075 422 aa12.49□□□□□ -0.41
LIMCH1-205ENST00000503057 CNNM2Q9H8M5 875 aa12.49□□□□□ -0.41
LIMCH1-205ENST00000503057 KIDINS220Q9ULH0 1771 aa12.49□□□□□ -0.41
LIMCH1-205ENST00000503057 LRRC7Q96NW7 1537 aa12.49□□□□□ -0.41
LIMCH1-205ENST00000503057 CATIPQ7Z7H3 387 aa12.49□□□□□ -0.41
LIMCH1-205ENST00000503057 HSP90B2PQ58FF3 399 aa12.49□□□□□ -0.41
LIMCH1-205ENST00000503057 TNNT3P45378 269 aaPredicted RBP12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 CAGE1Q8TC20 777 aa12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 DACT1Q9NYF0 836 aa12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 POLR3DP05423 398 aaPredicted RBP12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 ANO6Q4KMQ2 910 aa12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 HMGB2P26583 209 aaKnown RBP12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 PRIMPOLQ96LW4 560 aa12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 ZSCAN12O43309 604 aa12.48□□□□□ -0.41
LIMCH1-205ENST00000503057 RANBP6O60518 1105 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms