RNA–Protein interactions for RNA: ENST00000502443.1

USP46-203, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 2

Gene USP46, Length 572 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-203ENST00000502443 RTKN2Q8IZC4 609 aa9.25□□□□□ -0.93
USP46-203ENST00000502443 GRAPLQ8TC17 118 aaPredicted RBP9.25□□□□□ -0.93
USP46-203ENST00000502443 CCDC85AQ96PX6 553 aaPredicted RBP9.25□□□□□ -0.93
USP46-203ENST00000502443 TMX4Q9H1E5 349 aaPredicted RBP9.25□□□□□ -0.93
USP46-203ENST00000502443 TAOK3Q9H2K8 898 aa9.25□□□□□ -0.93
USP46-203ENST00000502443 C9orf78Q9NZ63 289 aaPredicted RBP9.25□□□□□ -0.93
USP46-203ENST00000502443 RNF181Q9P0P0 153 aa9.25□□□□□ -0.93
USP46-203ENST00000502443 MYH3P11055 1940 aa9.25□□□□□ -0.93
USP46-203ENST00000502443 GRM8O00222 908 aa9.24□□□□□ -0.93
USP46-203ENST00000502443 BCAR3O75815 825 aa9.24□□□□□ -0.93
USP46-203ENST00000502443 LMNB1P20700 586 aa9.24□□□□□ -0.93
USP46-203ENST00000502443 BRPF1P55201 1214 aaPredicted RBP9.24□□□□□ -0.93
USP46-203ENST00000502443 CTSWP56202 376 aa9.24□□□□□ -0.93
USP46-203ENST00000502443 CC2D2BQ6DHV5 1058 aa9.24□□□□□ -0.93
USP46-203ENST00000502443 ATP6V0A2Q9Y487 856 aa9.24□□□□□ -0.93
USP46-203ENST00000502443 KIF16BQ96L93 1317 aa9.24□□□□□ -0.93
USP46-203ENST00000502443 IPO8O15397 1037 aaKnown RBP9.23□□□□□ -0.93
USP46-203ENST00000502443 PRELPP51888 382 aa9.23□□□□□ -0.93
USP46-203ENST00000502443 CASP7P55210 303 aa9.23□□□□□ -0.93
USP46-203ENST00000502443 RPS8P62241 208 aaKnown RBP9.23□□□□□ -0.93
USP46-203ENST00000502443 GRIPAP1Q4V328 841 aa9.23□□□□□ -0.93
USP46-203ENST00000502443 SLC51AQ86UW1 340 aa9.23□□□□□ -0.93
USP46-203ENST00000502443 SP8Q8IXZ3 490 aa9.23□□□□□ -0.93
USP46-203ENST00000502443 ZNF784Q8NCA9 323 aaPredicted RBP9.23□□□□□ -0.93
USP46-203ENST00000502443 TTLL11Q8NHH1 800 aa9.23□□□□□ -0.93
USP46-203ENST00000502443 FRAT1Q92837 279 aaPredicted RBP9.23□□□□□ -0.93
USP46-203ENST00000502443 CELF1Q92879 486 aaKnown RBP9.23□□□□□ -0.93
USP46-203ENST00000502443 PLA2G12BQ9BX93 195 aa9.23□□□□□ -0.93
USP46-203ENST00000502443 API5Q9BZZ5 524 aaKnown RBP9.23□□□□□ -0.93
USP46-203ENST00000502443 SEC31BQ9NQW1 1179 aa9.23□□□□□ -0.93
USP46-203ENST00000502443 LTBP3Q9NS15 1303 aa9.23□□□□□ -0.93
USP46-203ENST00000502443 FKBP4Q02790 459 aaKnown RBP eCLIP9.22□□□□□ -0.93
USP46-203ENST00000502443 TMC4Q7Z404 712 aa9.22□□□□□ -0.93
USP46-203ENST00000502443 ZNF526Q8TF50 670 aaPredicted RBP9.22□□□□□ -0.93
USP46-203ENST00000502443 ARHGAP45Q92619 1136 aa9.22□□□□□ -0.93
USP46-203ENST00000502443 YTHDC1Q96MU7 727 aaKnown RBP9.22□□□□□ -0.93
USP46-203ENST00000502443 CDC5LQ99459 802 aaKnown RBP9.22□□□□□ -0.93
USP46-203ENST00000502443 GREM2Q9H772 168 aa9.22□□□□□ -0.93
USP46-203ENST00000502443 ZNF277Q9NRM2 450 aaPredicted RBP9.22□□□□□ -0.93
USP46-203ENST00000502443 COL4A1P02462 1669 aa9.21□□□□□ -0.93
USP46-203ENST00000502443 NBPF7P0C2Y1 421 aaPredicted RBP9.21□□□□□ -0.94
USP46-203ENST00000502443 CCT4P50991 539 aaKnown RBP9.21□□□□□ -0.94
USP46-203ENST00000502443 FOXO4P98177 505 aa9.21□□□□□ -0.94
USP46-203ENST00000502443 DPP8Q6V1X1 898 aaPredicted RBP9.21□□□□□ -0.94
USP46-203ENST00000502443 ANKRD18AQ8IVF6 992 aa9.21□□□□□ -0.94
USP46-203ENST00000502443 MPNDQ8N594 471 aa9.21□□□□□ -0.94
USP46-203ENST00000502443 PSMD1Q99460 953 aa9.21□□□□□ -0.94
USP46-203ENST00000502443 CHMP3Q9Y3E7 222 aa9.21□□□□□ -0.94
USP46-203ENST00000502443 DICER1Q9UPY3 1922 aaKnown RBP9.21□□□□□ -0.94
USP46-203ENST00000502443 CSF1RP07333 972 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 TRIM27P14373 513 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 ITGA6P23229 1130 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 IARSP41252 1262 aaKnown RBP9.2□□□□□ -0.94
USP46-203ENST00000502443 FAM161AQ3B820 660 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 EPHA10Q5JZY3 1008 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 ZKSCAN2Q63HK3 967 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 LMBR1LQ6UX01 489 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 ATF7IPQ6VMQ6 1270 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 SUPT20HQ8NEM7 779 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 CLUAP1Q96AJ1 413 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 SUCLG2Q96I99 432 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 USP44Q9H0E7 712 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 GPBP1L1Q9HC44 474 aaPredicted RBP9.2□□□□□ -0.94
USP46-203ENST00000502443 NSFL1CQ9UNZ2 370 aaKnown RBP9.2□□□□□ -0.94
USP46-203ENST00000502443 UTYO14607 1347 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 RTL9Q8NET4 1388 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 SNED1Q8TER0 1413 aa9.2□□□□□ -0.94
USP46-203ENST00000502443 TIAM2Q8IVF5 1701 aa9.19□□□□□ -0.94
USP46-203ENST00000502443 SPEF2Q9C093 1822 aa9.19□□□□□ -0.94
USP46-203ENST00000502443 ANKRD18BA2A2Z9 1011 aa9.19□□□□□ -0.94
USP46-203ENST00000502443 IGHMBP2P38935 993 aaKnown RBP9.19□□□□□ -0.94
USP46-203ENST00000502443 GPSM2P81274 684 aa9.19□□□□□ -0.94
USP46-203ENST00000502443 IFIT5Q13325 482 aaKnown RBP9.19□□□□□ -0.94
USP46-203ENST00000502443 CCDC57Q2TAC2 916 aa9.19□□□□□ -0.94
USP46-203ENST00000502443 JDP2Q8WYK2 163 aa9.19□□□□□ -0.94
USP46-203ENST00000502443 MPHOSPH8Q99549 860 aa9.19□□□□□ -0.94
USP46-203ENST00000502443 ANKIB1Q9P2G1 1089 aa9.19□□□□□ -0.94
USP46-203ENST00000502443 ZC3H4Q9UPT8 1303 aaKnown RBP9.19□□□□□ -0.94
USP46-203ENST00000502443 LRRC37AA6NMS7 1700 aa9.19□□□□□ -0.94
USP46-203ENST00000502443 C6orf229H3BNL8 230 aa9.18□□□□□ -0.94
USP46-203ENST00000502443 PPIP5K2O43314 1243 aa9.18□□□□□ -0.94
USP46-203ENST00000502443 AOC3Q16853 763 aa9.18□□□□□ -0.94
USP46-203ENST00000502443 TAF7LQ5H9L4 462 aa9.18□□□□□ -0.94
USP46-203ENST00000502443 INTS3Q68E01 1043 aaKnown RBP9.18□□□□□ -0.94
USP46-203ENST00000502443 DPY19L2Q6NUT2 758 aa9.18□□□□□ -0.94
USP46-203ENST00000502443 LARGE2Q8N3Y3 721 aa9.18□□□□□ -0.94
USP46-203ENST00000502443 KAZALD1Q96I82 304 aa9.18□□□□□ -0.94
USP46-203ENST00000502443 RTFDC1Q9BY42 306 aaPredicted RBP9.18□□□□□ -0.94
USP46-203ENST00000502443 BICC1Q9H694 974 aaKnown RBP9.18□□□□□ -0.94
USP46-203ENST00000502443 BSDC1Q9NW68 430 aaPredicted RBP9.18□□□□□ -0.94
USP46-203ENST00000502443 RCAN3Q9UKA8 241 aa9.18□□□□□ -0.94
USP46-203ENST00000502443 TNNQ9UQP3 1299 aa9.18□□□□□ -0.94
USP46-203ENST00000502443 KDM2BQ8NHM5 1336 aa9.17□□□□□ -0.94
USP46-203ENST00000502443 GLTPD2A6NH11 291 aa9.17□□□□□ -0.94
USP46-203ENST00000502443 UBTFL1P0CB47 393 aaPredicted RBP9.17□□□□□ -0.94
USP46-203ENST00000502443 WASHC4Q2M389 1173 aa9.17□□□□□ -0.94
USP46-203ENST00000502443 FTSJ3Q8IY81 847 aaKnown RBP9.17□□□□□ -0.94
USP46-203ENST00000502443 NIM1KQ8IY84 436 aa9.17□□□□□ -0.94
USP46-203ENST00000502443 VPS33BQ9H267 617 aa9.17□□□□□ -0.94
USP46-203ENST00000502443 POLLQ9UGP5 575 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms