RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, human

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGXB4-208	ENST00000498325	DCDC2B	A2VCK2	349 aa		7.77	□□□□□ -1.17
HMGXB4-208	ENST00000498325	MAPT	P10636	758 aa	Known RBP	7.77	□□□□□ -1.17
HMGXB4-208	ENST00000498325	CD33	P20138	364 aa		7.77	□□□□□ -1.17
HMGXB4-208	ENST00000498325	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	7.77	□□□□□ -1.17
HMGXB4-208	ENST00000498325	FAM182B	Q5T319	152 aa		7.77	□□□□□ -1.17
HMGXB4-208	ENST00000498325	FOXD4L3	Q6VB84	417 aa	Predicted RBP	7.77	□□□□□ -1.17
HMGXB4-208	ENST00000498325	C1orf216	Q8TAB5	229 aa		7.77	□□□□□ -1.17
HMGXB4-208	ENST00000498325	GOPC	Q9HD26	462 aa		7.77	□□□□□ -1.17
HMGXB4-208	ENST00000498325	ITSN2	Q9NZM3	1697 aa		7.76	□□□□□ -1.17
HMGXB4-208	ENST00000498325	STAU1	O95793	577 aa	Known RBP	7.76	□□□□□ -1.17
HMGXB4-208	ENST00000498325	ATP4A	P20648	1035 aa		7.76	□□□□□ -1.17
HMGXB4-208	ENST00000498325	TNP2	Q05952	138 aa		7.76	□□□□□ -1.17
HMGXB4-208	ENST00000498325	NKAPL	Q5M9Q1	402 aa		7.76	□□□□□ -1.17
HMGXB4-208	ENST00000498325	LCE3B	Q5TA77	95 aa		7.76	□□□□□ -1.17
HMGXB4-208	ENST00000498325	AIDA	Q96BJ3	306 aa		7.76	□□□□□ -1.17
HMGXB4-208	ENST00000498325	CFDP1	Q9UEE9	299 aa	Predicted RBP	7.76	□□□□□ -1.17
HMGXB4-208	ENST00000498325	SETD5	Q9C0A6	1442 aa		7.76	□□□□□ -1.17
HMGXB4-208	ENST00000498325	TMEM94	Q12767	1356 aa		7.75	□□□□□ -1.17
HMGXB4-208	ENST00000498325	SPDYE3	A6NKU9	549 aa		7.75	□□□□□ -1.17
HMGXB4-208	ENST00000498325	KHNYN	O15037	678 aa	Known RBP	7.75	□□□□□ -1.17
HMGXB4-208	ENST00000498325	PCBP4	P57723	403 aa	Known RBP	7.75	□□□□□ -1.17
HMGXB4-208	ENST00000498325	USP4	Q13107	963 aa		7.75	□□□□□ -1.17
HMGXB4-208	ENST00000498325	ZFP64	Q9NPA5	681 aa		7.75	□□□□□ -1.17
HMGXB4-208	ENST00000498325	TPSG1	Q9NRR2	321 aa		7.75	□□□□□ -1.17
HMGXB4-208	ENST00000498325	HCN2	Q9UL51	889 aa		7.75	□□□□□ -1.17
HMGXB4-208	ENST00000498325	PRR12	Q9ULL5	1215 aa		7.75	□□□□□ -1.17
HMGXB4-208	ENST00000498325	PLXNC1	O60486	1568 aa		7.75	□□□□□ -1.17
HMGXB4-208	ENST00000498325	UGGT1	Q9NYU2	1555 aa		7.75	□□□□□ -1.17
HMGXB4-208	ENST00000498325	SPATA31A6	Q5VVP1	1343 aa		7.75	□□□□□ -1.17
HMGXB4-208	ENST00000498325	ACIN1	Q9UKV3	1341 aa	Known RBP	7.75	□□□□□ -1.17
HMGXB4-208	ENST00000498325	GPATCH8	Q9UKJ3	1502 aa	Known RBP	7.74	□□□□□ -1.17
HMGXB4-208	ENST00000498325		A0A1W2PNR3	127 aa		7.74	□□□□□ -1.17
HMGXB4-208	ENST00000498325	APBA3	O96018	575 aa		7.74	□□□□□ -1.17
HMGXB4-208	ENST00000498325	PRRT3	Q5FWE3	981 aa		7.74	□□□□□ -1.17
HMGXB4-208	ENST00000498325	ARSJ	Q5FYB0	599 aa	Predicted RBP	7.74	□□□□□ -1.17
HMGXB4-208	ENST00000498325	ARTN	Q5T4W7	220 aa		7.74	□□□□□ -1.17
HMGXB4-208	ENST00000498325	NIFK	Q9BYG3	293 aa	Known RBP	7.74	□□□□□ -1.17
HMGXB4-208	ENST00000498325	NDUFB9	Q9Y6M9	179 aa		7.74	□□□□□ -1.17
HMGXB4-208	ENST00000498325	SAMD9L	Q8IVG5	1584 aa		7.74	□□□□□ -1.17
HMGXB4-208	ENST00000498325	ZC3H13	Q5T200	1668 aa	Known RBP	7.73	□□□□□ -1.17
HMGXB4-208	ENST00000498325	FAM135A	Q9P2D6	1515 aa		7.73	□□□□□ -1.17
HMGXB4-208	ENST00000498325	PHLPP1	O60346	1717 aa		7.73	□□□□□ -1.17
HMGXB4-208	ENST00000498325	DYRK3	O43781	588 aa		7.73	□□□□□ -1.17
HMGXB4-208	ENST00000498325	ZNF468	Q5VIY5	522 aa	Predicted RBP	7.73	□□□□□ -1.17
HMGXB4-208	ENST00000498325	NBPF11	Q86T75	865 aa		7.73	□□□□□ -1.17
HMGXB4-208	ENST00000498325	KRTAP4-12	Q9BQ66	201 aa		7.73	□□□□□ -1.17
HMGXB4-208	ENST00000498325	DOLK	Q9UPQ8	538 aa		7.73	□□□□□ -1.17
HMGXB4-208	ENST00000498325	COL16A1	Q07092	1604 aa	Predicted RBP	7.73	□□□□□ -1.17
HMGXB4-208	ENST00000498325	A2M	P01023	1474 aa		7.73	□□□□□ -1.17
HMGXB4-208	ENST00000498325	AFF2	P51816	1311 aa		7.73	□□□□□ -1.17
HMGXB4-208	ENST00000498325	CLSPN	Q9HAW4	1339 aa		7.73	□□□□□ -1.17
HMGXB4-208	ENST00000498325	KDM5D	Q9BY66	1539 aa		7.73	□□□□□ -1.17
HMGXB4-208	ENST00000498325	ZNF777	Q9ULD5	760 aa	Predicted RBP	7.72	□□□□□ -1.17
HMGXB4-208	ENST00000498325	SPAG9	O60271	1321 aa	Known RBP	7.72	□□□□□ -1.17
HMGXB4-208	ENST00000498325	CDC42BPB	Q9Y5S2	1711 aa		7.72	□□□□□ -1.17
HMGXB4-208	ENST00000498325	ATAD2	Q6PL18	1390 aa		7.71	□□□□□ -1.17
HMGXB4-208	ENST00000498325	RAB3GAP2	Q9H2M9	1393 aa		7.71	□□□□□ -1.17
HMGXB4-208	ENST00000498325	PZP	P20742	1482 aa		7.71	□□□□□ -1.18
HMGXB4-208	ENST00000498325	NLRP1	Q9C000	1473 aa		7.71	□□□□□ -1.18
HMGXB4-208	ENST00000498325	ELOA3C	A0A087WX78	387 aa	Predicted RBP	7.71	□□□□□ -1.18
HMGXB4-208	ENST00000498325	ELOA3D	A6NLF2	546 aa	Predicted RBP	7.71	□□□□□ -1.18
HMGXB4-208	ENST00000498325	ALAS2	P22557	587 aa		7.71	□□□□□ -1.18
HMGXB4-208	ENST00000498325	RBM6	P78332	1123 aa	Known RBP	7.71	□□□□□ -1.18
HMGXB4-208	ENST00000498325	NBPF1	Q3BBV0	1214 aa		7.71	□□□□□ -1.18
HMGXB4-208	ENST00000498325	TSGA10IP	Q3SY00	556 aa		7.71	□□□□□ -1.18
HMGXB4-208	ENST00000498325	ELOA3B	Q3SY89	546 aa		7.71	□□□□□ -1.18
HMGXB4-208	ENST00000498325	ELOA3	Q8NG57	546 aa		7.71	□□□□□ -1.18
HMGXB4-208	ENST00000498325	QTRT2	Q9H974	415 aa	Known RBP	7.71	□□□□□ -1.18
HMGXB4-208	ENST00000498325	SLAIN2	Q9P270	581 aa		7.71	□□□□□ -1.18
HMGXB4-208	ENST00000498325	CDC42BPA	Q5VT25	1732 aa		7.71	□□□□□ -1.18
HMGXB4-208	ENST00000498325	HFM1	A2PYH4	1435 aa		7.7	□□□□□ -1.18
HMGXB4-208	ENST00000498325	CAMSAP2	Q08AD1	1489 aa		7.7	□□□□□ -1.18
HMGXB4-208	ENST00000498325	ATP7A	Q04656	1500 aa		7.7	□□□□□ -1.18
HMGXB4-208	ENST00000498325	FAM157B	P0CG42	384 aa		7.7	□□□□□ -1.18
HMGXB4-208	ENST00000498325	TSPY4	P0CV99	314 aa		7.7	□□□□□ -1.18
HMGXB4-208	ENST00000498325	TSPY10	P0CW01	314 aa		7.7	□□□□□ -1.18
HMGXB4-208	ENST00000498325	YY1	P25490	414 aa		7.7	□□□□□ -1.18
HMGXB4-208	ENST00000498325	LTK	P29376	864 aa		7.7	□□□□□ -1.18
HMGXB4-208	ENST00000498325	HNRNPM	P52272	730 aa	Known RBP eCLIP	7.7	□□□□□ -1.18
HMGXB4-208	ENST00000498325	SIRT1	Q96EB6	747 aa		7.7	□□□□□ -1.18
HMGXB4-208	ENST00000498325	CHIC2	Q9UKJ5	165 aa		7.7	□□□□□ -1.18
HMGXB4-208	ENST00000498325	GJA3	Q9Y6H8	435 aa		7.7	□□□□□ -1.18
HMGXB4-208	ENST00000498325	LRP5	O75197	1615 aa		7.7	□□□□□ -1.18
HMGXB4-208	ENST00000498325	DAPK1	P53355	1430 aa		7.69	□□□□□ -1.18
HMGXB4-208	ENST00000498325	INHA	P05111	366 aa		7.69	□□□□□ -1.18
HMGXB4-208	ENST00000498325	TAT	P17735	454 aa	Predicted RBP	7.69	□□□□□ -1.18
HMGXB4-208	ENST00000498325	GDF10	P55107	478 aa		7.69	□□□□□ -1.18
HMGXB4-208	ENST00000498325	PRSS36	Q5K4E3	855 aa		7.69	□□□□□ -1.18
HMGXB4-208	ENST00000498325	MARK1	Q9P0L2	795 aa		7.69	□□□□□ -1.18
HMGXB4-208	ENST00000498325	ZNF644	Q9H582	1327 aa	Predicted RBP	7.69	□□□□□ -1.18
HMGXB4-208	ENST00000498325	ROCK1	Q13464	1354 aa		7.69	□□□□□ -1.18
HMGXB4-208	ENST00000498325	DHX57	Q6P158	1386 aa	Known RBP	7.69	□□□□□ -1.18
HMGXB4-208	ENST00000498325	ABCC5	O15440	1437 aa		7.69	□□□□□ -1.18
HMGXB4-208	ENST00000498325	PREX2	Q70Z35	1606 aa		7.68	□□□□□ -1.18
HMGXB4-208	ENST00000498325	APBB1	O00213	710 aa		7.68	□□□□□ -1.18
HMGXB4-208	ENST00000498325	SCNN1D	P51172	638 aa		7.68	□□□□□ -1.18
HMGXB4-208	ENST00000498325	OXLD1	Q5BKU9	147 aa		7.68	□□□□□ -1.18
HMGXB4-208	ENST00000498325	PROSER2	Q86WR7	435 aa	Predicted RBP	7.68	□□□□□ -1.18
HMGXB4-208	ENST00000498325	MTMR14	Q8NCE2	650 aa		7.68	□□□□□ -1.18
HMGXB4-208	ENST00000498325	BANK1	Q8NDB2	785 aa		7.68	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms