RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SYCP3Q8IZU3 236 aa15.13■□□□□ 0.01
PTPRF-215ENST00000496447 FLT4P35916 1363 aa15.13■□□□□ 0.01
PTPRF-215ENST00000496447 TRAF1Q13077 416 aa15.12■□□□□ 0.01
PTPRF-215ENST00000496447 TCERG1LQ5VWI1 586 aa15.12■□□□□ 0.01
PTPRF-215ENST00000496447 SMAP1Q8IYB5 467 aaPredicted RBP15.12■□□□□ 0.01
PTPRF-215ENST00000496447 WWC3Q9ULE0 1092 aa15.12■□□□□ 0.01
PTPRF-215ENST00000496447 CCDC40Q4G0X9 1142 aa15.12■□□□□ 0.01
PTPRF-215ENST00000496447 ARHGAP45Q92619 1136 aa15.12■□□□□ 0.01
PTPRF-215ENST00000496447 ESR2Q92731 530 aa15.12■□□□□ 0.01
PTPRF-215ENST00000496447 NF2P35240 595 aa15.12■□□□□ 0.01
PTPRF-215ENST00000496447 MTIF2P46199 727 aaKnown RBP15.12■□□□□ 0.01
PTPRF-215ENST00000496447 IRX3P78415 501 aaPredicted RBP15.12■□□□□ 0.01
PTPRF-215ENST00000496447 TDRD12Q587J7 1177 aaKnown RBP15.12■□□□□ 0.01
PTPRF-215ENST00000496447 MEIS3Q99687 375 aa15.12■□□□□ 0.01
PTPRF-215ENST00000496447 ZC3H12CQ9C0D7 883 aaKnown RBP15.12■□□□□ 0.01
PTPRF-215ENST00000496447 BMP2KLQ5H9B9 411 aa15.12■□□□□ 0.01
PTPRF-215ENST00000496447 IFIT1BQ5T764 474 aaKnown RBP15.12■□□□□ 0.01
PTPRF-215ENST00000496447 JDP2Q8WYK2 163 aa15.12■□□□□ 0.01
PTPRF-215ENST00000496447 DRC1Q96MC2 740 aa15.12■□□□□ 0.01
PTPRF-215ENST00000496447 PYM1Q9BRP8 204 aaKnown RBP15.12■□□□□ 0.01
PTPRF-215ENST00000496447 VEZTQ9HBM0 779 aa15.12■□□□□ 0.01
PTPRF-215ENST00000496447 ZRANB1Q9UGI0 708 aa15.12■□□□□ 0.01
PTPRF-215ENST00000496447 NUP88Q99567 741 aaPredicted RBP15.11■□□□□ 0.01
PTPRF-215ENST00000496447 PPFIA3O75145 1194 aa15.11■□□□□ 0.01
PTPRF-215ENST00000496447 MTHFSDQ2M296 383 aaKnown RBP15.11■□□□□ 0.01
PTPRF-215ENST00000496447 SKAP1Q86WV1 359 aa15.11■□□□□ 0.01
PTPRF-215ENST00000496447 FERMT2Q96AC1 680 aa15.11■□□□□ 0.01
PTPRF-215ENST00000496447 CNNM2Q9H8M5 875 aa15.11■□□□□ 0.01
PTPRF-215ENST00000496447 ZSCAN12O43309 604 aa15.11■□□□□ 0.01
PTPRF-215ENST00000496447 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.11■□□□□ 0.01
PTPRF-215ENST00000496447 KLF18A0A0U1RQI7 1052 aa15.1■□□□□ 0.01
PTPRF-215ENST00000496447 PANK2Q9BZ23 570 aa15.1■□□□□ 0.01
PTPRF-215ENST00000496447 TMCO3Q6UWJ1 677 aa15.1■□□□□ 0.01
PTPRF-215ENST00000496447 LRRC27Q9C0I9 530 aa15.1■□□□□ 0.01
PTPRF-215ENST00000496447 TBCAO75347 108 aaKnown RBP15.1■□□□□ 0.01
PTPRF-215ENST00000496447 GCP02774 474 aa15.1■□□□□ 0.01
PTPRF-215ENST00000496447 NBPF7P0C2Y1 421 aaPredicted RBP15.1■□□□□ 0.01
PTPRF-215ENST00000496447 CKAP2LQ8IYA6 745 aa15.1■□□□□ 0.01
PTPRF-215ENST00000496447 ERMNQ8TAM6 284 aa15.1■□□□□ 0.01
PTPRF-215ENST00000496447 BICD1Q96G01 975 aa15.1■□□□□ 0.01
PTPRF-215ENST00000496447 TFIP11Q9UBB9 837 aaKnown RBP15.1■□□□□ 0.01
PTPRF-215ENST00000496447 PPM1FP49593 454 aaPredicted RBP15.1■□□□□ 0.01
PTPRF-215ENST00000496447 DCAF5Q96JK2 942 aa15.1■□□□□ 0.01
PTPRF-215ENST00000496447 NSFL1CQ9UNZ2 370 aaKnown RBP15.1■□□□□ 0.01
PTPRF-215ENST00000496447 PCDH11XQ9BZA7 1347 aa15.1■□□□□ 0.01
PTPRF-215ENST00000496447 PCDH11YQ9BZA8 1340 aa15.1■□□□□ 0.01
PTPRF-215ENST00000496447 SLC9C2Q5TAH2 1124 aa15.1■□□□□ 0.01
PTPRF-215ENST00000496447 TMTC2Q8N394 836 aa15.1■□□□□ 0.01
PTPRF-215ENST00000496447 ZBTB43O43298 467 aa15.09■□□□□ 0.01
PTPRF-215ENST00000496447 STX6O43752 255 aa15.09■□□□□ 0.01
PTPRF-215ENST00000496447 YEATS4O95619 227 aa15.09■□□□□ 0.01
PTPRF-215ENST00000496447 RBM26Q5T8P6 1007 aaKnown RBP15.09■□□□□ 0.01
PTPRF-215ENST00000496447 DDX19AQ9NUU7 478 aaKnown RBP15.09■□□□□ 0.01
PTPRF-215ENST00000496447 MACROD2A1Z1Q3 448 aa15.09■□□□□ 0.01
PTPRF-215ENST00000496447 IRS4O14654 1257 aaPredicted RBP15.09■□□□□ 0.01
PTPRF-215ENST00000496447 KIF5CO60282 957 aa15.09■□□□□ 0.01
PTPRF-215ENST00000496447 C16orf71Q8IYS4 520 aaPredicted RBP15.09■□□□□ 0.01
PTPRF-215ENST00000496447 FAM107BQ9H098 131 aa15.09■□□□□ 0.01
PTPRF-215ENST00000496447 BTG4Q9NY30 223 aa15.09■□□□□ 0.01
PTPRF-215ENST00000496447 ASXL1Q8IXJ9 1541 aa15.09■□□□□ 0.01
PTPRF-215ENST00000496447 CPLX3Q8WVH0 158 aa15.09■□□□□ 0.01
PTPRF-215ENST00000496447 CTNNBL1Q8WYA6 563 aaPredicted RBP15.09■□□□□ 0.01
PTPRF-215ENST00000496447 BRF1Q92994 677 aa15.09■□□□□ 0.01
PTPRF-215ENST00000496447 MAGEB6P1A0A0J9YX57 407 aa15.08■□□□□ 0.01
PTPRF-215ENST00000496447 USO1O60763 962 aaKnown RBP15.08■□□□□ 0.01
PTPRF-215ENST00000496447 SSFA2P28290 1259 aa15.08■□□□□ 0.01
PTPRF-215ENST00000496447 VTI1AQ96AJ9 217 aa15.08■□□□□ 0.01
PTPRF-215ENST00000496447 EYA3Q99504 573 aa15.08■□□□□ 0.01
PTPRF-215ENST00000496447 C8orf58Q8NAV2 365 aa15.08■□□□□ 0
PTPRF-215ENST00000496447 ITSN2Q9NZM3 1697 aa15.08■□□□□ 0
PTPRF-215ENST00000496447 BIN1O00499 593 aa15.08■□□□□ 0
PTPRF-215ENST00000496447 KCNA6P17658 529 aa15.08■□□□□ 0
PTPRF-215ENST00000496447 GNAQP50148 359 aa15.08■□□□□ 0
PTPRF-215ENST00000496447 HEATR3Q7Z4Q2 680 aa15.08■□□□□ 0
PTPRF-215ENST00000496447 FAM114A1Q8IWE2 563 aa15.08■□□□□ 0
PTPRF-215ENST00000496447 POLKQ9UBT6 870 aa15.08■□□□□ 0
PTPRF-215ENST00000496447 MCMDC2Q4G0Z9 681 aa15.08■□□□□ 0
PTPRF-215ENST00000496447 RTN1Q16799 776 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 KANK3Q6NY19 840 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 RIMBP2O15034 1052 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 GNPATO15228 680 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 DNA2P51530 1060 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 TRAPPC8Q9Y2L5 1435 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 ABCC10Q5T3U5 1492 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 MAP3K5Q99683 1374 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 NPATQ14207 1427 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 GOLGA6L7A0A1B0GV03 622 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 ATP8B2P98198 1209 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 TRAPPC3LQ5T215 181 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 CCDC174Q6PII3 467 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 LINS1Q8NG48 757 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 UBXN4Q92575 508 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 CCDC94Q9BW85 323 aaPredicted RBP15.07■□□□□ 0
PTPRF-215ENST00000496447 ANKRD2Q9GZV1 360 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 TRPM2O94759 1503 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 ZMYM3Q14202 1370 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 PRC1O43663 620 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 PLCG2P16885 1265 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 CTNNA2P26232 953 aa15.07■□□□□ 0
PTPRF-215ENST00000496447 CCDC102AQ96A19 550 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms