RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 ITPRIPQ8IWB1 547 aa21.5■■□□□ 1.03
HDAC6-235ENST00000495515 WWC3Q9ULE0 1092 aa21.49■■□□□ 1.03
HDAC6-235ENST00000495515 TNRC6CQ9HCJ0 1690 aaKnown RBP21.49■■□□□ 1.03
HDAC6-235ENST00000495515 TTLL11Q8NHH1 800 aa21.48■■□□□ 1.03
HDAC6-235ENST00000495515 PANK1Q8TE04 598 aa21.48■■□□□ 1.03
HDAC6-235ENST00000495515 KIAA1551Q9HCM1 1747 aa21.47■■□□□ 1.03
HDAC6-235ENST00000495515 N4BP2Q86UW6 1770 aaPredicted RBP21.47■■□□□ 1.03
HDAC6-235ENST00000495515 GRIN3BO60391 1043 aa21.47■■□□□ 1.03
HDAC6-235ENST00000495515 BBOX1O75936 387 aa21.47■■□□□ 1.03
HDAC6-235ENST00000495515 RLBP1P12271 317 aa21.47■■□□□ 1.03
HDAC6-235ENST00000495515 RRP1P56182 461 aaKnown RBP21.47■■□□□ 1.03
HDAC6-235ENST00000495515 GRAPQ13588 217 aa21.47■■□□□ 1.03
HDAC6-235ENST00000495515 PRPF40BQ6NWY9 871 aaKnown RBP21.47■■□□□ 1.03
HDAC6-235ENST00000495515 GRAPLQ8TC17 118 aaPredicted RBP21.47■■□□□ 1.03
HDAC6-235ENST00000495515 SUCLG2Q96I99 432 aa21.47■■□□□ 1.03
HDAC6-235ENST00000495515 TMX4Q9H1E5 349 aaPredicted RBP21.47■■□□□ 1.03
HDAC6-235ENST00000495515 CHMP4BQ9H444 224 aaKnown RBP21.47■■□□□ 1.03
HDAC6-235ENST00000495515 CSF1RP07333 972 aa21.46■■□□□ 1.03
HDAC6-235ENST00000495515 SOGA3Q5TF21 947 aa21.46■■□□□ 1.03
HDAC6-235ENST00000495515 TMC4Q7Z404 712 aa21.46■■□□□ 1.03
HDAC6-235ENST00000495515 MEIS3Q99687 375 aa21.46■■□□□ 1.03
HDAC6-235ENST00000495515 RTL9Q8NET4 1388 aa21.46■■□□□ 1.03
HDAC6-235ENST00000495515 FOXO4P98177 505 aa21.45■■□□□ 1.02
HDAC6-235ENST00000495515 LMBR1LQ6UX01 489 aa21.45■■□□□ 1.02
HDAC6-235ENST00000495515 CCDC85AQ96PX6 553 aaPredicted RBP21.45■■□□□ 1.02
HDAC6-235ENST00000495515 CDC5LQ99459 802 aaKnown RBP21.45■■□□□ 1.02
HDAC6-235ENST00000495515 CHMP3Q9Y3E7 222 aa21.45■■□□□ 1.02
HDAC6-235ENST00000495515 DDX60Q8IY21 1712 aaKnown RBP21.45■■□□□ 1.02
HDAC6-235ENST00000495515 LAMB2P55268 1798 aa21.45■■□□□ 1.02
HDAC6-235ENST00000495515 COL11A2P13942 1736 aaPredicted RBP21.44■■□□□ 1.02
HDAC6-235ENST00000495515 MVPQ14764 893 aaKnown RBP21.44■■□□□ 1.02
HDAC6-235ENST00000495515 DDX19BQ9UMR2 479 aa21.44■■□□□ 1.02
HDAC6-235ENST00000495515 DLEC1Q9Y238 1755 aa21.43■■□□□ 1.02
HDAC6-235ENST00000495515 PPEF1O14829 653 aaPredicted RBP21.43■■□□□ 1.02
HDAC6-235ENST00000495515 YBX3P16989 372 aaKnown RBP eCLIP21.43■■□□□ 1.02
HDAC6-235ENST00000495515 RPS8P62241 208 aaKnown RBP21.43■■□□□ 1.02
HDAC6-235ENST00000495515 IFIT5Q13325 482 aaKnown RBP21.43■■□□□ 1.02
HDAC6-235ENST00000495515 EPHA10Q5JZY3 1008 aa21.43■■□□□ 1.02
HDAC6-235ENST00000495515 CC2D2BQ6DHV5 1058 aa21.43■■□□□ 1.02
HDAC6-235ENST00000495515 BICC1Q9H694 974 aaKnown RBP21.43■■□□□ 1.02
HDAC6-235ENST00000495515 GREM2Q9H772 168 aa21.43■■□□□ 1.02
HDAC6-235ENST00000495515 ANKRD18BA2A2Z9 1011 aa21.42■■□□□ 1.02
HDAC6-235ENST00000495515 C21orf2O43822 256 aa21.42■■□□□ 1.02
HDAC6-235ENST00000495515 GNAI2P04899 355 aa21.42■■□□□ 1.02
HDAC6-235ENST00000495515 ITGA6P23229 1130 aa21.42■■□□□ 1.02
HDAC6-235ENST00000495515 CCDC57Q2TAC2 916 aa21.42■■□□□ 1.02
HDAC6-235ENST00000495515 FAM161AQ3B820 660 aa21.42■■□□□ 1.02
HDAC6-235ENST00000495515 RABL6Q3YEC7 729 aaPredicted RBP21.42■■□□□ 1.02
HDAC6-235ENST00000495515 ANKRD18AQ8IVF6 992 aa21.42■■□□□ 1.02
HDAC6-235ENST00000495515 KAZALD1Q96I82 304 aa21.42■■□□□ 1.02
HDAC6-235ENST00000495515 SEC31BQ9NQW1 1179 aa21.42■■□□□ 1.02
HDAC6-235ENST00000495515 COG6Q9Y2V7 657 aa21.42■■□□□ 1.02
HDAC6-235ENST00000495515 ZBTB7BO15156 539 aaPredicted RBP21.41■■□□□ 1.02
HDAC6-235ENST00000495515 GRIPAP1Q4V328 841 aa21.41■■□□□ 1.02
HDAC6-235ENST00000495515 CELF1Q92879 486 aaKnown RBP21.41■■□□□ 1.02
HDAC6-235ENST00000495515 ZNF219Q9P2Y4 722 aaPredicted RBP21.41■■□□□ 1.02
HDAC6-235ENST00000495515 LRRFIP2Q9Y608 721 aaKnown RBP21.41■■□□□ 1.02
HDAC6-235ENST00000495515 IGHMBP2P38935 993 aaKnown RBP21.4■■□□□ 1.02
HDAC6-235ENST00000495515 CCDC93Q567U6 631 aa21.4■■□□□ 1.02
HDAC6-235ENST00000495515 TAF7LQ5H9L4 462 aa21.4■■□□□ 1.02
HDAC6-235ENST00000495515 ATP6V0A2Q9Y487 856 aa21.4■■□□□ 1.02
HDAC6-235ENST00000495515 C20orf194Q5TEA3 1177 aa21.39■■□□□ 1.01
HDAC6-235ENST00000495515 SP8Q8IXZ3 490 aa21.39■■□□□ 1.01
HDAC6-235ENST00000495515 RTKN2Q8IZC4 609 aa21.39■■□□□ 1.01
HDAC6-235ENST00000495515 ANKRD44Q8N8A2 993 aa21.39■■□□□ 1.01
HDAC6-235ENST00000495515 C7orf43Q8WVR3 580 aa21.39■■□□□ 1.01
HDAC6-235ENST00000495515 ARHGAP27Q6ZUM4 889 aa21.38■■□□□ 1.01
HDAC6-235ENST00000495515 MPHOSPH8Q99549 860 aa21.38■■□□□ 1.01
HDAC6-235ENST00000495515 SUPT16HQ9Y5B9 1047 aaKnown RBP21.38■■□□□ 1.01
HDAC6-235ENST00000495515 BRCA1P38398 1863 aaKnown RBP21.38■■□□□ 1.01
HDAC6-235ENST00000495515 CENPBP07199 599 aaPredicted RBP21.36■■□□□ 1.01
HDAC6-235ENST00000495515 BSDC1Q9NW68 430 aaPredicted RBP21.36■■□□□ 1.01
HDAC6-235ENST00000495515 MYH3P11055 1940 aa21.35■■□□□ 1.01
HDAC6-235ENST00000495515 MTX1Q13505 466 aa21.34■■□□□ 1.01
HDAC6-235ENST00000495515 SLX4Q8IY92 1834 aa21.34■■□□□ 1.01
HDAC6-235ENST00000495515 MPNDQ8N594 471 aa21.33■■□□□ 1.01
HDAC6-235ENST00000495515 TAOK3Q9H2K8 898 aa21.33■■□□□ 1.01
HDAC6-235ENST00000495515 ZBTB40Q9NUA8 1239 aa21.33■■□□□ 1.01
HDAC6-235ENST00000495515 ARFGEF1Q9Y6D6 1849 aa21.33■■□□□ 1.01
HDAC6-235ENST00000495515 SRGAP3O43295 1099 aa21.32■■□□□ 1
HDAC6-235ENST00000495515 DPP8Q6V1X1 898 aaPredicted RBP21.32■■□□□ 1
HDAC6-235ENST00000495515 LDHAL6AQ6ZMR3 332 aa21.32■■□□□ 1
HDAC6-235ENST00000495515 ZNF784Q8NCA9 323 aaPredicted RBP21.32■■□□□ 1
HDAC6-235ENST00000495515 SUPT20HQ8NEM7 779 aa21.32■■□□□ 1
HDAC6-235ENST00000495515 CNNM1Q9NRU3 951 aa21.32■■□□□ 1
HDAC6-235ENST00000495515 LTBP3Q9NS15 1303 aa21.31■■□□□ 1
HDAC6-235ENST00000495515 FKBP4Q02790 459 aaKnown RBP eCLIP21.31■■□□□ 1
HDAC6-235ENST00000495515 OLFM4Q6UX06 510 aa21.31■■□□□ 1
HDAC6-235ENST00000495515 ZNF594Q96JF6 807 aaPredicted RBP21.31■■□□□ 1
HDAC6-235ENST00000495515 PSMD1Q99460 953 aa21.31■■□□□ 1
HDAC6-235ENST00000495515 ANKRD2Q9GZV1 360 aa21.31■■□□□ 1
HDAC6-235ENST00000495515 C1orf115Q9H7X2 142 aa21.31■■□□□ 1
HDAC6-235ENST00000495515 ANKIB1Q9P2G1 1089 aa21.31■■□□□ 1
HDAC6-235ENST00000495515 NSFL1CQ9UNZ2 370 aaKnown RBP21.31■■□□□ 1
HDAC6-235ENST00000495515 FBXO3Q9UK99 471 aa21.3■■□□□ 1
HDAC6-235ENST00000495515 MINPP1Q9UNW1 487 aa21.3■■□□□ 1
HDAC6-235ENST00000495515 NFKBIEO00221 500 aa21.29■■□□□ 1
HDAC6-235ENST00000495515 ATP8B2P98198 1209 aa21.29■■□□□ 1
HDAC6-235ENST00000495515 XDHP47989 1333 aa21.29■■□□□ 1
HDAC6-235ENST00000495515 UTRNP46939 3433 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms