RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 EXOC5O00471 708 aa16.55■□□□□ 0.24
VCP-207ENST00000493886 FOXD4L6Q3SYB3 417 aaPredicted RBP16.55■□□□□ 0.24
VCP-207ENST00000493886 FOXD4L3Q6VB84 417 aaPredicted RBP16.55■□□□□ 0.24
VCP-207ENST00000493886 PLCH1Q4KWH8 1693 aa16.55■□□□□ 0.24
VCP-207ENST00000493886 CCDC171Q6TFL3 1326 aa16.55■□□□□ 0.24
VCP-207ENST00000493886 PRPF40AO75400 957 aaKnown RBP16.55■□□□□ 0.24
VCP-207ENST00000493886 KLHL40Q2TBA0 621 aa16.55■□□□□ 0.24
VCP-207ENST00000493886 INTS4Q96HW7 963 aaKnown RBP16.55■□□□□ 0.24
VCP-207ENST00000493886 BCL9O00512 1426 aa16.54■□□□□ 0.24
VCP-207ENST00000493886 KIF6Q6ZMV9 814 aa16.54■□□□□ 0.24
VCP-207ENST00000493886 DBNDD2Q9BQY9 259 aa16.54■□□□□ 0.24
VCP-207ENST00000493886 KAT6BQ8WYB5 2073 aa16.54■□□□□ 0.24
VCP-207ENST00000493886 ATG9AQ7Z3C6 839 aa16.54■□□□□ 0.24
VCP-207ENST00000493886 SNRKQ9NRH2 765 aa16.54■□□□□ 0.24
VCP-207ENST00000493886 PRPF40BQ6NWY9 871 aaKnown RBP16.53■□□□□ 0.24
VCP-207ENST00000493886 TTC14Q96N46 770 aa16.53■□□□□ 0.24
VCP-207ENST00000493886 ISY1Q9ULR0 285 aaKnown RBP16.53■□□□□ 0.24
VCP-207ENST00000493886 ZDHHC9Q9Y397 364 aa16.53■□□□□ 0.24
VCP-207ENST00000493886 LRP6O75581 1613 aa16.53■□□□□ 0.24
VCP-207ENST00000493886 A0A0D9SFI3 127 aa16.53■□□□□ 0.24
VCP-207ENST00000493886 KCNB2Q92953 911 aa16.53■□□□□ 0.24
VCP-207ENST00000493886 EDC3Q96F86 508 aaKnown RBP16.53■□□□□ 0.24
VCP-207ENST00000493886 TRIM28Q13263 835 aaKnown RBP16.52■□□□□ 0.24
VCP-207ENST00000493886 NECTIN1Q15223 517 aa16.52■□□□□ 0.24
VCP-207ENST00000493886 LMBRD1Q9NUN5 540 aa16.52■□□□□ 0.24
VCP-207ENST00000493886 IL15P40933 162 aaPredicted RBP16.52■□□□□ 0.23
VCP-207ENST00000493886 MAP4K1Q92918 833 aa16.52■□□□□ 0.23
VCP-207ENST00000493886 SYTL4Q96C24 671 aaPredicted RBP16.52■□□□□ 0.23
VCP-207ENST00000493886 SLC4A9Q96Q91 983 aa16.52■□□□□ 0.23
VCP-207ENST00000493886 RBM8AQ9Y5S9 174 aaKnown RBP16.52■□□□□ 0.23
VCP-207ENST00000493886 CASTP20810 708 aaKnown RBP16.51■□□□□ 0.23
VCP-207ENST00000493886 SECISBP2LQ93073 1101 aaKnown RBP16.51■□□□□ 0.23
VCP-207ENST00000493886 WNK3Q9BYP7 1800 aa16.51■□□□□ 0.23
VCP-207ENST00000493886 EYA2O00167 538 aa16.51■□□□□ 0.23
VCP-207ENST00000493886 ZSCAN23Q3MJ62 389 aa16.51■□□□□ 0.23
VCP-207ENST00000493886 TPRNQ4KMQ1 711 aa16.51■□□□□ 0.23
VCP-207ENST00000493886 ZNF594Q96JF6 807 aaPredicted RBP16.51■□□□□ 0.23
VCP-207ENST00000493886 GPR108Q9NPR9 543 aa16.51■□□□□ 0.23
VCP-207ENST00000493886 MED23Q9ULK4 1368 aa16.51■□□□□ 0.23
VCP-207ENST00000493886 LTBP4Q8N2S1 1624 aa16.51■□□□□ 0.23
VCP-207ENST00000493886 MAP3K15Q6ZN16 1313 aa16.51■□□□□ 0.23
VCP-207ENST00000493886 KCNJ4P48050 445 aa16.5■□□□□ 0.23
VCP-207ENST00000493886 AK2P54819 239 aa16.5■□□□□ 0.23
VCP-207ENST00000493886 HAUS7Q99871 368 aa16.5■□□□□ 0.23
VCP-207ENST00000493886 ADAMTS2O95450 1211 aa16.5■□□□□ 0.23
VCP-207ENST00000493886 CYP19A1P11511 503 aaPredicted RBP16.5■□□□□ 0.23
VCP-207ENST00000493886 ADCK5Q3MIX3 580 aa16.5■□□□□ 0.23
VCP-207ENST00000493886 LRRC24Q50LG9 513 aa16.5■□□□□ 0.23
VCP-207ENST00000493886 JAKMIP1Q96N16 626 aaKnown RBP16.5■□□□□ 0.23
VCP-207ENST00000493886 DNAJC2Q99543 621 aaKnown RBP16.5■□□□□ 0.23
VCP-207ENST00000493886 TM6SF1Q9BZW5 370 aa16.5■□□□□ 0.23
VCP-207ENST00000493886 NDUFB9Q9Y6M9 179 aa16.5■□□□□ 0.23
VCP-207ENST00000493886 PCCAP05165 728 aaPredicted RBP16.49■□□□□ 0.23
VCP-207ENST00000493886 ZKSCAN1P17029 563 aaPredicted RBP16.49■□□□□ 0.23
VCP-207ENST00000493886 CREB3L3Q68CJ9 461 aa16.49■□□□□ 0.23
VCP-207ENST00000493886 GIGYF2Q6Y7W6 1299 aaKnown RBP16.49■□□□□ 0.23
VCP-207ENST00000493886 NEUROD6Q96NK8 337 aa16.49■□□□□ 0.23
VCP-207ENST00000493886 NSFL1CQ9UNZ2 370 aaKnown RBP16.49■□□□□ 0.23
VCP-207ENST00000493886 CIAO1O76071 339 aa16.49■□□□□ 0.23
VCP-207ENST00000493886 CPA1P15085 419 aa16.49■□□□□ 0.23
VCP-207ENST00000493886 GPT2Q8TD30 523 aa16.49■□□□□ 0.23
VCP-207ENST00000493886 RFX7Q2KHR2 1363 aa16.49■□□□□ 0.23
VCP-207ENST00000493886 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.49■□□□□ 0.23
VCP-207ENST00000493886 PRIM1P49642 420 aaKnown RBP16.49■□□□□ 0.23
VCP-207ENST00000493886 RUFY3Q7L099 469 aa16.49■□□□□ 0.23
VCP-207ENST00000493886 ZNF589Q86UQ0 364 aaPredicted RBP16.49■□□□□ 0.23
VCP-207ENST00000493886 ZSWIM6Q9HCJ5 1215 aa16.49■□□□□ 0.23
VCP-207ENST00000493886 LIMCH1Q9UPQ0 1083 aa16.49■□□□□ 0.23
VCP-207ENST00000493886 ZBTB38Q8NAP3 1195 aaPredicted RBP16.48■□□□□ 0.23
VCP-207ENST00000493886 ANP32BQ92688 251 aaKnown RBP16.48■□□□□ 0.23
VCP-207ENST00000493886 FAM89AQ96GI7 184 aa16.48■□□□□ 0.23
VCP-207ENST00000493886 CDCA7Q9BWT1 371 aaPredicted RBP16.48■□□□□ 0.23
VCP-207ENST00000493886 CCDC9Q9Y3X0 531 aaKnown RBP16.48■□□□□ 0.23
VCP-207ENST00000493886 BRD1O95696 1058 aa16.48■□□□□ 0.23
VCP-207ENST00000493886 TIMM10P62072 90 aa16.48■□□□□ 0.23
VCP-207ENST00000493886 HLFQ16534 295 aa16.48■□□□□ 0.23
VCP-207ENST00000493886 CCDC57Q2TAC2 916 aa16.48■□□□□ 0.23
VCP-207ENST00000493886 PLA2G12BQ9BX93 195 aa16.48■□□□□ 0.23
VCP-207ENST00000493886 PUS3Q9BZE2 481 aaKnown RBP16.48■□□□□ 0.23
VCP-207ENST00000493886 ZBTB1Q9Y2K1 713 aa16.48■□□□□ 0.23
VCP-207ENST00000493886 PHLPP1O60346 1717 aa16.47■□□□□ 0.23
VCP-207ENST00000493886 VPS53Q5VIR6 699 aa16.47■□□□□ 0.23
VCP-207ENST00000493886 PDRG1Q9NUG6 133 aa16.47■□□□□ 0.23
VCP-207ENST00000493886 CYP46A1Q9Y6A2 500 aa16.47■□□□□ 0.23
VCP-207ENST00000493886 SPATA31A1Q5TZJ5 1347 aa16.47■□□□□ 0.23
VCP-207ENST00000493886 ZNF609O15014 1411 aa16.47■□□□□ 0.23
VCP-207ENST00000493886 SLC27A2O14975 620 aa16.47■□□□□ 0.23
VCP-207ENST00000493886 JCADQ9P266 1359 aa16.47■□□□□ 0.23
VCP-207ENST00000493886 LARP6Q9BRS8 491 aaKnown RBP16.46■□□□□ 0.23
VCP-207ENST00000493886 RBSNQ9H1K0 784 aa16.46■□□□□ 0.23
VCP-207ENST00000493886 THRAP3Q9Y2W1 955 aaKnown RBP16.46■□□□□ 0.23
VCP-207ENST00000493886 DOT1LQ8TEK3 1739 aa16.46■□□□□ 0.23
VCP-207ENST00000493886 DTNBO60941 627 aa16.46■□□□□ 0.23
VCP-207ENST00000493886 TAF5LO75529 589 aa16.46■□□□□ 0.23
VCP-207ENST00000493886 HSP90AB3PQ58FF7 597 aa16.46■□□□□ 0.23
VCP-207ENST00000493886 RNF20Q5VTR2 975 aa16.46■□□□□ 0.23
VCP-207ENST00000493886 DDX46Q7L014 1031 aaKnown RBP16.46■□□□□ 0.23
VCP-207ENST00000493886 NRAPQ86VF7 1730 aa16.46■□□□□ 0.23
VCP-207ENST00000493886 SYCE3A1L190 88 aa16.46■□□□□ 0.22
VCP-207ENST00000493886 GPTP24298 496 aa16.46■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms