RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 TATP17735 454 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-212ENST00000493341 NBPF10Q6P3W6 841 aaKnown RBP6.72□□□□□ -1.33
VPS13A-212ENST00000493341 MRFAP1L1Q96HT8 127 aa6.72□□□□□ -1.33
VPS13A-212ENST00000493341 CWC22Q9HCG8 908 aaKnown RBP6.72□□□□□ -1.33
VPS13A-212ENST00000493341 TTF2Q9UNY4 1162 aaKnown RBP6.72□□□□□ -1.33
VPS13A-212ENST00000493341 K7ELQ4 463 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-212ENST00000493341 ITGBL1O95965 494 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-212ENST00000493341 INPP5BP32019 993 aa6.72□□□□□ -1.33
VPS13A-212ENST00000493341 ANKIB1Q9P2G1 1089 aa6.72□□□□□ -1.33
VPS13A-212ENST00000493341 KCNMB2Q9Y691 235 aa6.72□□□□□ -1.33
VPS13A-212ENST00000493341 MINDY4BA8MYZ0 360 aa6.71□□□□□ -1.33
VPS13A-212ENST00000493341 EREGO14944 169 aa6.71□□□□□ -1.33
VPS13A-212ENST00000493341 WDR4P57081 412 aaKnown RBP6.71□□□□□ -1.33
VPS13A-212ENST00000493341 IER5Q5VY09 327 aa6.71□□□□□ -1.33
VPS13A-212ENST00000493341 BTLAQ7Z6A9 289 aa6.71□□□□□ -1.33
VPS13A-212ENST00000493341 KIAA0825Q8IV33 1275 aa6.71□□□□□ -1.33
VPS13A-212ENST00000493341 GRIP2Q9C0E4 1043 aa6.71□□□□□ -1.33
VPS13A-212ENST00000493341 ZNF408Q9H9D4 720 aa6.71□□□□□ -1.33
VPS13A-212ENST00000493341 MRVI1Q9Y6F6 885 aa6.71□□□□□ -1.33
VPS13A-212ENST00000493341 CLSTN1O94985 981 aa6.71□□□□□ -1.34
VPS13A-212ENST00000493341 GSTT1P30711 240 aa6.71□□□□□ -1.34
VPS13A-212ENST00000493341 ARSJQ5FYB0 599 aaPredicted RBP6.71□□□□□ -1.34
VPS13A-212ENST00000493341 C1orf127Q8N9H9 656 aa6.71□□□□□ -1.34
VPS13A-212ENST00000493341 RASGRP4Q8TDF6 673 aa6.71□□□□□ -1.34
VPS13A-212ENST00000493341 EMID1Q96A84 441 aaPredicted RBP6.71□□□□□ -1.34
VPS13A-212ENST00000493341 NASPP49321 788 aaPredicted RBP6.7□□□□□ -1.34
VPS13A-212ENST00000493341 GRM2Q14416 872 aa6.7□□□□□ -1.34
VPS13A-212ENST00000493341 CCDC85BQ15834 202 aaPredicted RBP6.7□□□□□ -1.34
VPS13A-212ENST00000493341 LRRC69Q6ZNQ3 347 aa6.7□□□□□ -1.34
VPS13A-212ENST00000493341 RELL1Q8IUW5 271 aa6.7□□□□□ -1.34
VPS13A-212ENST00000493341 SEC16BQ96JE7 1060 aa6.7□□□□□ -1.34
VPS13A-212ENST00000493341 NOC4LQ9BVI4 516 aaKnown RBP6.7□□□□□ -1.34
VPS13A-212ENST00000493341 KLF16Q9BXK1 252 aaPredicted RBP6.7□□□□□ -1.34
VPS13A-212ENST00000493341 PPP4R2Q9NY27 417 aa6.7□□□□□ -1.34
VPS13A-212ENST00000493341 ZDHHC3Q9NYG2 299 aa6.7□□□□□ -1.34
VPS13A-212ENST00000493341 XYLBO75191 536 aa6.69□□□□□ -1.34
VPS13A-212ENST00000493341 GBP2P32456 591 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-212ENST00000493341 GPC1P35052 558 aa6.69□□□□□ -1.34
VPS13A-212ENST00000493341 SLC19A1P41440 591 aa6.69□□□□□ -1.34
VPS13A-212ENST00000493341 GALNT12Q8IXK2 581 aa6.69□□□□□ -1.34
VPS13A-212ENST00000493341 GPATCH3Q96I76 525 aa6.69□□□□□ -1.34
VPS13A-212ENST00000493341 INSM2Q96T92 566 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-212ENST00000493341 CNTN3Q9P232 1028 aa6.69□□□□□ -1.34
VPS13A-212ENST00000493341 EFR3BQ9Y2G0 817 aa6.69□□□□□ -1.34
VPS13A-212ENST00000493341 FOXC1Q12948 553 aa6.69□□□□□ -1.34
VPS13A-212ENST00000493341 NFX1Q12986 1120 aaKnown RBP6.69□□□□□ -1.34
VPS13A-212ENST00000493341 SRPK1Q96SB4 655 aaKnown RBP6.69□□□□□ -1.34
VPS13A-212ENST00000493341 TRIM56Q9BRZ2 755 aaKnown RBP6.69□□□□□ -1.34
VPS13A-212ENST00000493341 TRIM55Q9BYV6 548 aa6.69□□□□□ -1.34
VPS13A-212ENST00000493341 CHRDQ9H2X0 955 aa6.69□□□□□ -1.34
VPS13A-212ENST00000493341 ABI2Q9NYB9 513 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-212ENST00000493341 ADAMTS1Q9UHI8 967 aa6.69□□□□□ -1.34
VPS13A-212ENST00000493341 CES1P23141 567 aa6.68□□□□□ -1.34
VPS13A-212ENST00000493341 HSD3B2P26439 372 aa6.68□□□□□ -1.34
VPS13A-212ENST00000493341 ETFBP38117 255 aa6.68□□□□□ -1.34
VPS13A-212ENST00000493341 EIF4A3P38919 411 aaKnown RBP6.68□□□□□ -1.34
VPS13A-212ENST00000493341 PWP1Q13610 501 aa6.68□□□□□ -1.34
VPS13A-212ENST00000493341 RSRP1Q9BUV0 290 aa6.68□□□□□ -1.34
VPS13A-212ENST00000493341 EHD4Q9H223 541 aa6.68□□□□□ -1.34
VPS13A-212ENST00000493341 SUV39H2Q9H5I1 410 aa6.68□□□□□ -1.34
VPS13A-212ENST00000493341 hCG_2014768A0A024R1R8 64 aa6.67□□□□□ -1.34
VPS13A-212ENST00000493341 RNF144AP50876 292 aaPredicted RBP6.67□□□□□ -1.34
VPS13A-212ENST00000493341 PTPROQ16827 1216 aa6.67□□□□□ -1.34
VPS13A-212ENST00000493341 NBPF6Q5VWK0 638 aa6.67□□□□□ -1.34
VPS13A-212ENST00000493341 ANKS3Q6ZW76 656 aa6.67□□□□□ -1.34
VPS13A-212ENST00000493341 NBPF4Q96M43 638 aa6.67□□□□□ -1.34
VPS13A-212ENST00000493341 POLR3GLQ9BT43 218 aa6.67□□□□□ -1.34
VPS13A-212ENST00000493341 POLMQ9NP87 494 aaPredicted RBP6.67□□□□□ -1.34
VPS13A-212ENST00000493341 U2SURPO15042 1029 aaKnown RBP6.67□□□□□ -1.34
VPS13A-212ENST00000493341 RAB11FIP3O75154 756 aa6.67□□□□□ -1.34
VPS13A-212ENST00000493341 FBXO24O75426 580 aa6.67□□□□□ -1.34
VPS13A-212ENST00000493341 XRCC5P13010 732 aaKnown RBP6.67□□□□□ -1.34
VPS13A-212ENST00000493341 TIMP2P16035 220 aa6.67□□□□□ -1.34
VPS13A-212ENST00000493341 EPB42P16452 691 aa6.67□□□□□ -1.34
VPS13A-212ENST00000493341 IBSPP21815 317 aaPredicted RBP6.67□□□□□ -1.34
VPS13A-212ENST00000493341 FCGRTP55899 365 aa6.67□□□□□ -1.34
VPS13A-212ENST00000493341 MAP3K11Q16584 847 aa6.67□□□□□ -1.34
VPS13A-212ENST00000493341 ZNF296Q8WUU4 475 aaPredicted RBP6.67□□□□□ -1.34
VPS13A-212ENST00000493341 GPC6Q9Y625 555 aaPredicted RBP6.67□□□□□ -1.34
VPS13A-212ENST00000493341 CCDC85CA6NKD9 419 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 ATP4AP20648 1035 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 IGBP1P78318 339 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 POU4F2Q12837 409 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 SERINC3Q13530 473 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 TTC39BQ5VTQ0 682 aaPredicted RBP6.66□□□□□ -1.34
VPS13A-212ENST00000493341 PRICKLE2Q7Z3G6 844 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 CPLX3Q8WVH0 158 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 PMEPA1Q969W9 287 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 CEP63Q96MT8 703 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 TMEM74Q96NL1 305 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 LATS2Q9NRM7 1088 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 GINM1Q9NU53 330 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 AKAP2Q9Y2D5 859 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 J3QL48 77 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 RNF187Q5TA31 235 aaPredicted RBP6.66□□□□□ -1.34
VPS13A-212ENST00000493341 C3orf58Q8NDZ4 430 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 RNF166Q96A37 237 aaPredicted RBP6.66□□□□□ -1.34
VPS13A-212ENST00000493341 EAF1Q96JC9 268 aaPredicted RBP6.66□□□□□ -1.34
VPS13A-212ENST00000493341 ZIC5Q96T25 663 aa6.66□□□□□ -1.34
VPS13A-212ENST00000493341 KANSL3Q9P2N6 904 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms