RNA–Protein interactions for RNA: ENST00000493256.1

LYSMD4-208, Transcript of LysM domain containing 4, humanhuman

TSL 3

Gene LYSMD4, Length 880 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4-208ENST00000493256 TRIM28Q13263 835 aaKnown RBP28.68■■■□□ 2.18
LYSMD4-208ENST00000493256 MPNDQ8N594 471 aa28.68■■■□□ 2.18
LYSMD4-208ENST00000493256 SUPT20HQ8NEM7 779 aa28.68■■■□□ 2.18
LYSMD4-208ENST00000493256 SCNN1DP51172 638 aa28.67■■■□□ 2.18
LYSMD4-208ENST00000493256 RIC3Q7Z5B4 369 aa28.67■■■□□ 2.18
LYSMD4-208ENST00000493256 LMOD1P29536 600 aaPredicted RBP28.66■■■□□ 2.18
LYSMD4-208ENST00000493256 RTL5Q5HYW3 569 aaPredicted RBP28.66■■■□□ 2.18
LYSMD4-208ENST00000493256 LRRC37AA6NMS7 1700 aa28.66■■■□□ 2.18
LYSMD4-208ENST00000493256 ZEB1P37275 1124 aaPredicted RBP28.65■■■□□ 2.18
LYSMD4-208ENST00000493256 SF3B3Q15393 1217 aaKnown RBP28.65■■■□□ 2.18
LYSMD4-208ENST00000493256 MKRN1Q9UHC7 482 aaKnown RBP28.65■■■□□ 2.18
LYSMD4-208ENST00000493256 DUOX1Q9NRD9 1551 aa28.64■■■□□ 2.18
LYSMD4-208ENST00000493256 EPS15P42566 896 aa28.64■■■□□ 2.18
LYSMD4-208ENST00000493256 MAP1SQ66K74 1059 aaPredicted RBP28.64■■■□□ 2.18
LYSMD4-208ENST00000493256 TMC4Q7Z404 712 aa28.64■■■□□ 2.18
LYSMD4-208ENST00000493256 ZNRF3Q9ULT6 936 aa28.64■■■□□ 2.18
LYSMD4-208ENST00000493256 IRS4O14654 1257 aaPredicted RBP28.63■■■□□ 2.17
LYSMD4-208ENST00000493256 KIAA2012Q0VF49 1180 aa28.63■■■□□ 2.17
LYSMD4-208ENST00000493256 TSPYL6Q8N831 410 aa28.63■■■□□ 2.17
LYSMD4-208ENST00000493256 COL4A1P02462 1669 aa28.63■■■□□ 2.17
LYSMD4-208ENST00000493256 CCDC30Q5VVM6 783 aa28.62■■■□□ 2.17
LYSMD4-208ENST00000493256 CNTROBQ8N137 903 aa28.62■■■□□ 2.17
LYSMD4-208ENST00000493256 CELF1Q92879 486 aaKnown RBP28.62■■■□□ 2.17
LYSMD4-208ENST00000493256 CXCL9Q07325 125 aa28.61■■■□□ 2.17
LYSMD4-208ENST00000493256 TSR2Q969E8 191 aaKnown RBP28.61■■■□□ 2.17
LYSMD4-208ENST00000493256 MYD88Q99836 296 aa28.61■■■□□ 2.17
LYSMD4-208ENST00000493256 TMEM88BA6NKF7 163 aa28.6■■■□□ 2.17
LYSMD4-208ENST00000493256 CCDC27Q2M243 656 aa28.6■■■□□ 2.17
LYSMD4-208ENST00000493256 ZBTB38Q8NAP3 1195 aaPredicted RBP28.6■■■□□ 2.17
LYSMD4-208ENST00000493256 CNTNAP1P78357 1384 aa28.6■■■□□ 2.17
LYSMD4-208ENST00000493256 HSPA1AP0DMV8 641 aaKnown RBP28.59■■■□□ 2.17
LYSMD4-208ENST00000493256 HSPA1BP0DMV9 641 aaKnown RBP28.59■■■□□ 2.17
LYSMD4-208ENST00000493256 WWC1Q8IX03 1113 aa28.59■■■□□ 2.17
LYSMD4-208ENST00000493256 CHMP4AQ9BY43 222 aa28.58■■■□□ 2.17
LYSMD4-208ENST00000493256 GPRC5DQ9NZD1 345 aa28.58■■■□□ 2.17
LYSMD4-208ENST00000493256 USP50Q70EL3 339 aaPredicted RBP28.57■■■□□ 2.16
LYSMD4-208ENST00000493256 CCDC191Q8NCU4 936 aa28.57■■■□□ 2.16
LYSMD4-208ENST00000493256 MRS2Q9HD23 443 aa28.57■■■□□ 2.16
LYSMD4-208ENST00000493256 DDX58O95786 925 aaKnown RBP28.56■■■□□ 2.16
LYSMD4-208ENST00000493256 COL13A1Q5TAT6 717 aaPredicted RBP28.56■■■□□ 2.16
LYSMD4-208ENST00000493256 CIAPIN1Q6FI81 312 aa28.56■■■□□ 2.16
LYSMD4-208ENST00000493256 METTL22Q9BUU2 404 aaPredicted RBP28.56■■■□□ 2.16
LYSMD4-208ENST00000493256 ZNF316A6NFI3 1004 aaPredicted RBP28.55■■■□□ 2.16
LYSMD4-208ENST00000493256 RAD17O75943 681 aa28.55■■■□□ 2.16
LYSMD4-208ENST00000493256 PCCAP05165 728 aaPredicted RBP28.55■■■□□ 2.16
LYSMD4-208ENST00000493256 GMPSP49915 693 aaPredicted RBP28.55■■■□□ 2.16
LYSMD4-208ENST00000493256 CWC25Q9NXE8 425 aaPredicted RBP28.55■■■□□ 2.16
LYSMD4-208ENST00000493256 NSFL1CQ9UNZ2 370 aaKnown RBP28.55■■■□□ 2.16
LYSMD4-208ENST00000493256 YDJCA8MPS7 323 aa28.54■■■□□ 2.16
LYSMD4-208ENST00000493256 GPSM2P81274 684 aa28.54■■■□□ 2.16
LYSMD4-208ENST00000493256 ADARB2Q9NS39 739 aaKnown RBP28.54■■■□□ 2.16
LYSMD4-208ENST00000493256 RPS8P62241 208 aaKnown RBP28.53■■■□□ 2.16
LYSMD4-208ENST00000493256 TNIP1Q15025 636 aa28.53■■■□□ 2.16
LYSMD4-208ENST00000493256 JARID2Q92833 1246 aaPredicted RBP28.53■■■□□ 2.16
LYSMD4-208ENST00000493256 SEC31BQ9NQW1 1179 aa28.53■■■□□ 2.16
LYSMD4-208ENST00000493256 MAP3K2Q9Y2U5 619 aa28.53■■■□□ 2.16
LYSMD4-208ENST00000493256 IL16Q14005 1332 aa28.52■■■□□ 2.16
LYSMD4-208ENST00000493256 ANP32CO43423 234 aa28.52■■■□□ 2.16
LYSMD4-208ENST00000493256 HSP90B1P14625 803 aaKnown RBP28.52■■■□□ 2.16
LYSMD4-208ENST00000493256 WASHC4Q2M389 1173 aa28.52■■■□□ 2.16
LYSMD4-208ENST00000493256 POLLQ9UGP5 575 aa28.52■■■□□ 2.16
LYSMD4-208ENST00000493256 TWISTNBQ3B726 338 aaPredicted RBP28.51■■■□□ 2.15
LYSMD4-208ENST00000493256 STK31Q9BXU1 1019 aa28.51■■■□□ 2.15
LYSMD4-208ENST00000493256 CDHR2Q9BYE9 1310 aa28.5■■■□□ 2.15
LYSMD4-208ENST00000493256 PI4KAP2A4QPH2 592 aa28.5■■■□□ 2.15
LYSMD4-208ENST00000493256 C6orf229H3BNL8 230 aa28.5■■■□□ 2.15
LYSMD4-208ENST00000493256 PDE8AO60658 829 aa28.5■■■□□ 2.15
LYSMD4-208ENST00000493256 VEGFBP49765 207 aa28.5■■■□□ 2.15
LYSMD4-208ENST00000493256 FMR1Q06787 632 aaKnown RBP eCLIP28.5■■■□□ 2.15
LYSMD4-208ENST00000493256 NCBP3Q53F19 620 aaKnown RBP28.5■■■□□ 2.15
LYSMD4-208ENST00000493256 KSR2Q6VAB6 950 aa28.5■■■□□ 2.15
LYSMD4-208ENST00000493256 PI4KAP1Q8N8J0 262 aa28.5■■■□□ 2.15
LYSMD4-208ENST00000493256 BCL2L13Q9BXK5 485 aa28.5■■■□□ 2.15
LYSMD4-208ENST00000493256 IGKV5-2P06315 115 aa28.49■■■□□ 2.15
LYSMD4-208ENST00000493256 CCDC152Q4G0S7 254 aa28.49■■■□□ 2.15
LYSMD4-208ENST00000493256 RIMBP2O15034 1052 aa28.48■■■□□ 2.15
LYSMD4-208ENST00000493256 GPR101Q96P66 508 aaPredicted RBP28.48■■■□□ 2.15
LYSMD4-208ENST00000493256 DBNDD1Q9H9R9 158 aa28.48■■■□□ 2.15
LYSMD4-208ENST00000493256 RASSF10A6NK89 507 aa28.47■■■□□ 2.15
LYSMD4-208ENST00000493256 TRAF5O00463 557 aa28.47■■■□□ 2.15
LYSMD4-208ENST00000493256 G2E3Q7L622 706 aa28.47■■■□□ 2.15
LYSMD4-208ENST00000493256 TBC1D16Q8TBP0 767 aa28.47■■■□□ 2.15
LYSMD4-208ENST00000493256 CCDC85AQ96PX6 553 aaPredicted RBP28.47■■■□□ 2.15
LYSMD4-208ENST00000493256 EYA3Q99504 573 aa28.46■■■□□ 2.15
LYSMD4-208ENST00000493256 ABT1Q9ULW3 272 aaKnown RBP28.46■■■□□ 2.15
LYSMD4-208ENST00000493256 TRPM7Q96QT4 1865 aa28.46■■■□□ 2.15
LYSMD4-208ENST00000493256 FANCIQ9NVI1 1328 aa28.45■■■□□ 2.15
LYSMD4-208ENST00000493256 SHTN1A0MZ66 631 aa28.45■■■□□ 2.14
LYSMD4-208ENST00000493256 SLC4A2P04920 1241 aa28.45■■■□□ 2.14
LYSMD4-208ENST00000493256 DEFB115Q30KQ5 88 aa28.45■■■□□ 2.14
LYSMD4-208ENST00000493256 PODXL2Q9NZ53 605 aa28.45■■■□□ 2.14
LYSMD4-208ENST00000493256 CNOT7Q9UIV1 285 aaKnown RBP28.45■■■□□ 2.14
LYSMD4-208ENST00000493256 PSMD14O00487 310 aa28.44■■■□□ 2.14
LYSMD4-208ENST00000493256 HIRAP54198 1017 aaPredicted RBP28.44■■■□□ 2.14
LYSMD4-208ENST00000493256 NEXNQ0ZGT2 675 aa28.44■■■□□ 2.14
LYSMD4-208ENST00000493256 TRPM4Q8TD43 1214 aa28.44■■■□□ 2.14
LYSMD4-208ENST00000493256 ZBTB12Q9Y330 459 aaPredicted RBP28.44■■■□□ 2.14
LYSMD4-208ENST00000493256 SALL2Q9Y467 1007 aaPredicted RBP28.44■■■□□ 2.14
LYSMD4-208ENST00000493256 ECE2O60344 883 aa28.43■■■□□ 2.14
LYSMD4-208ENST00000493256 DOK7Q18PE1 504 aa28.43■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms