RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 MAP2K1Q02750 393 aaPredicted RBP11.88□□□□□ -0.51
HDAC3-212ENST00000492407 CALD1Q05682 793 aaKnown RBP11.88□□□□□ -0.51
HDAC3-212ENST00000492407 AIMP1Q12904 312 aaKnown RBP11.88□□□□□ -0.51
HDAC3-212ENST00000492407 DDX10Q13206 875 aaKnown RBP11.88□□□□□ -0.51
HDAC3-212ENST00000492407 SF3B3Q15393 1217 aaKnown RBP11.88□□□□□ -0.51
HDAC3-212ENST00000492407 HDGFL1Q5TGJ6 251 aa11.88□□□□□ -0.51
HDAC3-212ENST00000492407 ZC3H15Q8WU90 426 aaKnown RBP11.88□□□□□ -0.51
HDAC3-212ENST00000492407 ISCA1Q9BUE6 129 aa11.88□□□□□ -0.51
HDAC3-212ENST00000492407 GPRC5DQ9NZD1 345 aa11.88□□□□□ -0.51
HDAC3-212ENST00000492407 PGAP2Q9UHJ9 254 aa11.88□□□□□ -0.51
HDAC3-212ENST00000492407 ADAMTS8Q9UP79 889 aa11.88□□□□□ -0.51
HDAC3-212ENST00000492407 ANXA1P04083 346 aa11.87□□□□□ -0.51
HDAC3-212ENST00000492407 ECE1P42892 770 aa11.87□□□□□ -0.51
HDAC3-212ENST00000492407 CXCL9Q07325 125 aa11.87□□□□□ -0.51
HDAC3-212ENST00000492407 NEUROD2Q15784 382 aa11.87□□□□□ -0.51
HDAC3-212ENST00000492407 AOC3Q16853 763 aa11.87□□□□□ -0.51
HDAC3-212ENST00000492407 COL4A5P29400 1685 aa11.87□□□□□ -0.51
HDAC3-212ENST00000492407 TCERG1O14776 1098 aaKnown RBP11.86□□□□□ -0.51
HDAC3-212ENST00000492407 FOXN1O15353 648 aa11.86□□□□□ -0.51
HDAC3-212ENST00000492407 ZNF853P0CG23 659 aa11.86□□□□□ -0.51
HDAC3-212ENST00000492407 HCLS1P14317 486 aaPredicted RBP11.86□□□□□ -0.51
HDAC3-212ENST00000492407 CIAPIN1Q6FI81 312 aa11.86□□□□□ -0.51
HDAC3-212ENST00000492407 CCDC146Q8IYE0 955 aa11.86□□□□□ -0.51
HDAC3-212ENST00000492407 HHIPL1Q96JK4 782 aa11.86□□□□□ -0.51
HDAC3-212ENST00000492407 CHPF2Q9P2E5 772 aa11.86□□□□□ -0.51
HDAC3-212ENST00000492407 WDR33Q9C0J8 1336 aaKnown RBP11.86□□□□□ -0.51
HDAC3-212ENST00000492407 GNAI1P63096 354 aa11.85□□□□□ -0.51
HDAC3-212ENST00000492407 DUSP27Q5VZP5 1158 aa11.85□□□□□ -0.51
HDAC3-212ENST00000492407 NECTIN2Q92692 538 aa11.85□□□□□ -0.51
HDAC3-212ENST00000492407 DPF2Q92785 391 aa11.85□□□□□ -0.51
HDAC3-212ENST00000492407 IFT57Q9NWB7 429 aa11.85□□□□□ -0.51
HDAC3-212ENST00000492407 ABT1Q9ULW3 272 aaKnown RBP11.85□□□□□ -0.51
HDAC3-212ENST00000492407 LAS1LQ9Y4W2 734 aaKnown RBP11.85□□□□□ -0.51
HDAC3-212ENST00000492407 MAP2K2P36507 400 aa11.84□□□□□ -0.51
HDAC3-212ENST00000492407 GMPSP49915 693 aaPredicted RBP11.84□□□□□ -0.51
HDAC3-212ENST00000492407 PRKRIP1Q9H875 184 aaPredicted RBP11.84□□□□□ -0.51
HDAC3-212ENST00000492407 TLL2Q9Y6L7 1015 aa11.84□□□□□ -0.51
HDAC3-212ENST00000492407 ANKRD36CQ5JPF3 1778 aa11.83□□□□□ -0.52
HDAC3-212ENST00000492407 RPS12P25398 132 aaKnown RBP11.83□□□□□ -0.52
HDAC3-212ENST00000492407 KRT24Q2M2I5 525 aa11.83□□□□□ -0.52
HDAC3-212ENST00000492407 WASHC4Q2M389 1173 aa11.83□□□□□ -0.52
HDAC3-212ENST00000492407 CST9Q5W186 159 aa11.83□□□□□ -0.52
HDAC3-212ENST00000492407 ZBTB38Q8NAP3 1195 aaPredicted RBP11.83□□□□□ -0.52
HDAC3-212ENST00000492407 FAM89AQ96GI7 184 aa11.83□□□□□ -0.52
HDAC3-212ENST00000492407 EYA3Q99504 573 aa11.83□□□□□ -0.52
HDAC3-212ENST00000492407 BCL2L13Q9BXK5 485 aa11.83□□□□□ -0.52
HDAC3-212ENST00000492407 MBIPQ9NS73 344 aa11.83□□□□□ -0.52
HDAC3-212ENST00000492407 H7C1D1 291 aa11.82□□□□□ -0.52
HDAC3-212ENST00000492407 RPS8P62241 208 aaKnown RBP11.82□□□□□ -0.52
HDAC3-212ENST00000492407 GOLGA2Q08379 1002 aa11.82□□□□□ -0.52
HDAC3-212ENST00000492407 CDC37L1Q7L3B6 337 aa11.82□□□□□ -0.52
HDAC3-212ENST00000492407 CAPNS2Q96L46 248 aa11.82□□□□□ -0.52
HDAC3-212ENST00000492407 PODXL2Q9NZ53 605 aa11.82□□□□□ -0.52
HDAC3-212ENST00000492407 LTBP1Q14766 1721 aa11.82□□□□□ -0.52
HDAC3-212ENST00000492407 IRS4O14654 1257 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-212ENST00000492407 CA12O43570 354 aa11.81□□□□□ -0.52
HDAC3-212ENST00000492407 RIC3Q7Z5B4 369 aa11.81□□□□□ -0.52
HDAC3-212ENST00000492407 SAPCD2Q86UD0 394 aa11.81□□□□□ -0.52
HDAC3-212ENST00000492407 SLC51AQ86UW1 340 aa11.81□□□□□ -0.52
HDAC3-212ENST00000492407 HOMEZQ8IX15 550 aa11.81□□□□□ -0.52
HDAC3-212ENST00000492407 CCDC191Q8NCU4 936 aa11.81□□□□□ -0.52
HDAC3-212ENST00000492407 BEGAINQ9BUH8 593 aa11.81□□□□□ -0.52
HDAC3-212ENST00000492407 CNOT7Q9UIV1 285 aaKnown RBP11.81□□□□□ -0.52
HDAC3-212ENST00000492407 NSFL1CQ9UNZ2 370 aaKnown RBP11.81□□□□□ -0.52
HDAC3-212ENST00000492407 YDJCA8MPS7 323 aa11.8□□□□□ -0.52
HDAC3-212ENST00000492407 ATP5J2-PTCD1G3V325 749 aa11.8□□□□□ -0.52
HDAC3-212ENST00000492407 RAD17O75943 681 aa11.8□□□□□ -0.52
HDAC3-212ENST00000492407 DDX58O95786 925 aaKnown RBP11.8□□□□□ -0.52
HDAC3-212ENST00000492407 PCCAP05165 728 aaPredicted RBP11.8□□□□□ -0.52
HDAC3-212ENST00000492407 HSPA8P11142 646 aaKnown RBP11.8□□□□□ -0.52
HDAC3-212ENST00000492407 CELF1Q92879 486 aaKnown RBP11.8□□□□□ -0.52
HDAC3-212ENST00000492407 GPR101Q96P66 508 aaPredicted RBP11.8□□□□□ -0.52
HDAC3-212ENST00000492407 C6orf229H3BNL8 230 aa11.79□□□□□ -0.52
HDAC3-212ENST00000492407 TRAF5O00463 557 aa11.79□□□□□ -0.52
HDAC3-212ENST00000492407 APAF1O14727 1248 aa11.79□□□□□ -0.52
HDAC3-212ENST00000492407 CAPN15O75808 1086 aa11.79□□□□□ -0.52
HDAC3-212ENST00000492407 LBX1P52954 281 aa11.79□□□□□ -0.52
HDAC3-212ENST00000492407 HIRAP54198 1017 aaPredicted RBP11.79□□□□□ -0.52
HDAC3-212ENST00000492407 CCDC30Q5VVM6 783 aa11.79□□□□□ -0.52
HDAC3-212ENST00000492407 ZC3H12CQ9C0D7 883 aaKnown RBP11.79□□□□□ -0.52
HDAC3-212ENST00000492407 POLLQ9UGP5 575 aa11.79□□□□□ -0.52
HDAC3-212ENST00000492407 LRRC37AA6NMS7 1700 aa11.78□□□□□ -0.52
HDAC3-212ENST00000492407 PDE8AO60658 829 aa11.78□□□□□ -0.52
HDAC3-212ENST00000492407 CELF2O95319 508 aaKnown RBP11.78□□□□□ -0.52
HDAC3-212ENST00000492407 GPSM2P81274 684 aa11.78□□□□□ -0.52
HDAC3-212ENST00000492407 CCDC27Q2M243 656 aa11.78□□□□□ -0.52
HDAC3-212ENST00000492407 CCDC152Q4G0S7 254 aa11.78□□□□□ -0.52
HDAC3-212ENST00000492407 MICALL2Q8IY33 904 aa11.78□□□□□ -0.52
HDAC3-212ENST00000492407 TBC1D16Q8TBP0 767 aa11.78□□□□□ -0.52
HDAC3-212ENST00000492407 CWC25Q9NXE8 425 aaPredicted RBP11.78□□□□□ -0.52
HDAC3-212ENST00000492407 DUOX1Q9NRD9 1551 aa11.77□□□□□ -0.53
HDAC3-212ENST00000492407 PSMD14O00487 310 aa11.77□□□□□ -0.53
HDAC3-212ENST00000492407 VIL1P09327 827 aaKnown RBP11.77□□□□□ -0.53
HDAC3-212ENST00000492407 BRPF1P55201 1214 aaPredicted RBP11.77□□□□□ -0.53
HDAC3-212ENST00000492407 CYP4F22Q6NT55 531 aa11.77□□□□□ -0.53
HDAC3-212ENST00000492407 PAXIP1Q6ZW49 1069 aaPredicted RBP11.77□□□□□ -0.53
HDAC3-212ENST00000492407 METTL22Q9BUU2 404 aaPredicted RBP11.77□□□□□ -0.53
HDAC3-212ENST00000492407 GLIS2Q9BZE0 524 aaPredicted RBP11.77□□□□□ -0.53
HDAC3-212ENST00000492407 PHAXQ9H814 394 aaKnown RBP11.77□□□□□ -0.53
HDAC3-212ENST00000492407 THSD7BQ9C0I4 1608 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms