RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 WWC1Q8IX03 1113 aa7.43□□□□□ -1.22
VPS41-214ENST00000490924 GTPBP3Q969Y2 492 aaKnown RBP7.43□□□□□ -1.22
VPS41-214ENST00000490924 CFAP53Q96M91 514 aa7.43□□□□□ -1.22
VPS41-214ENST00000490924 MYH16Q9H6N6 1097 aa7.43□□□□□ -1.22
VPS41-214ENST00000490924 TIMMDC1Q9NPL8 285 aa7.43□□□□□ -1.22
VPS41-214ENST00000490924 KIDINS220Q9ULH0 1771 aa7.43□□□□□ -1.22
VPS41-214ENST00000490924 SHPRHQ149N8 1683 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 PPLO60437 1756 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 A0A1W2PRU2 124 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 GPR25O00155 361 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 APAF1O14727 1248 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 RFC5P40937 340 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 MAP2K3P46734 347 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 NFKBIBQ15653 356 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 ILDR2Q71H61 639 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 AFAP1Q8N556 730 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 OCSTAMPQ9BR26 566 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 FAM117AQ9C073 453 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 KIF13AQ9H1H9 1805 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 NPATQ14207 1427 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 ASXL2Q76L83 1435 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 UGGT1Q9NYU2 1555 aa7.42□□□□□ -1.22
VPS41-214ENST00000490924 SOCS7O14512 581 aa7.41□□□□□ -1.22
VPS41-214ENST00000490924 KIF3BO15066 747 aa7.41□□□□□ -1.22
VPS41-214ENST00000490924 MYCP01106 439 aaPredicted RBP7.41□□□□□ -1.22
VPS41-214ENST00000490924 CSB-PGBD3P0DP91 1061 aa7.41□□□□□ -1.22
VPS41-214ENST00000490924 BRPF1P55201 1214 aaPredicted RBP7.41□□□□□ -1.22
VPS41-214ENST00000490924 POU4F2Q12837 409 aa7.41□□□□□ -1.22
VPS41-214ENST00000490924 WDR44Q5JSH3 913 aa7.41□□□□□ -1.22
VPS41-214ENST00000490924 TAS1R3Q7RTX0 852 aa7.41□□□□□ -1.22
VPS41-214ENST00000490924 PGBD3Q8N328 593 aa7.41□□□□□ -1.22
VPS41-214ENST00000490924 EPS8L1Q8TE68 723 aa7.41□□□□□ -1.22
VPS41-214ENST00000490924 NUCKS1Q9H1E3 243 aaKnown RBP7.41□□□□□ -1.22
VPS41-214ENST00000490924 PNNQ9H307 717 aaKnown RBP7.41□□□□□ -1.22
VPS41-214ENST00000490924 UPF2Q9HAU5 1272 aaKnown RBP7.41□□□□□ -1.22
VPS41-214ENST00000490924 LRRC4BQ9NT99 713 aa7.41□□□□□ -1.22
VPS41-214ENST00000490924 ISY1Q9ULR0 285 aaKnown RBP7.41□□□□□ -1.22
VPS41-214ENST00000490924 ADGRF5Q8IZF2 1346 aa7.41□□□□□ -1.22
VPS41-214ENST00000490924 NSD3Q9BZ95 1437 aa7.41□□□□□ -1.22
VPS41-214ENST00000490924 REREQ9P2R6 1566 aa7.41□□□□□ -1.22
VPS41-214ENST00000490924 GIGYF1O75420 1035 aaPredicted RBP7.4□□□□□ -1.22
VPS41-214ENST00000490924 RARSP54136 660 aaKnown RBP7.4□□□□□ -1.22
VPS41-214ENST00000490924 GAS6Q14393 721 aa7.4□□□□□ -1.22
VPS41-214ENST00000490924 CFAP70Q5T0N1 1121 aa7.4□□□□□ -1.22
VPS41-214ENST00000490924 CHMP4BQ9H444 224 aaKnown RBP7.4□□□□□ -1.22
VPS41-214ENST00000490924 RWDD1Q9H446 243 aaPredicted RBP7.4□□□□□ -1.22
VPS41-214ENST00000490924 RRAGCQ9HB90 399 aa7.4□□□□□ -1.22
VPS41-214ENST00000490924 GPBP1L1Q9HC44 474 aaPredicted RBP7.4□□□□□ -1.22
VPS41-214ENST00000490924 EVC2Q86UK5 1308 aa7.4□□□□□ -1.22
VPS41-214ENST00000490924 ATAD2Q6PL18 1390 aa7.4□□□□□ -1.22
VPS41-214ENST00000490924 PPIP5K1Q6PFW1 1433 aa7.4□□□□□ -1.22
VPS41-214ENST00000490924 NLRP1Q9C000 1473 aa7.4□□□□□ -1.22
VPS41-214ENST00000490924 FRMPD1Q5SYB0 1578 aa7.4□□□□□ -1.22
VPS41-214ENST00000490924 CDC42BPGQ6DT37 1551 aa7.4□□□□□ -1.22
VPS41-214ENST00000490924 QRICH2Q9H0J4 1663 aa7.39□□□□□ -1.23
VPS41-214ENST00000490924 PNPLA6Q8IY17 1366 aa7.39□□□□□ -1.23
VPS41-214ENST00000490924 USP19O94966 1318 aa7.39□□□□□ -1.23
VPS41-214ENST00000490924 CNTNAP5Q8WYK1 1306 aa7.39□□□□□ -1.23
VPS41-214ENST00000490924 KIF16BQ96L93 1317 aa7.39□□□□□ -1.23
VPS41-214ENST00000490924 F11P03951 625 aa7.39□□□□□ -1.23
VPS41-214ENST00000490924 HDAC1Q13547 482 aaPredicted RBP7.39□□□□□ -1.23
VPS41-214ENST00000490924 CNGB1Q14028 1251 aaPredicted RBP7.39□□□□□ -1.23
VPS41-214ENST00000490924 DBN1Q16643 649 aa7.39□□□□□ -1.23
VPS41-214ENST00000490924 NPM2Q86SE8 214 aaKnown RBP7.39□□□□□ -1.23
VPS41-214ENST00000490924 MORC1Q86VD1 984 aa7.39□□□□□ -1.23
VPS41-214ENST00000490924 HMX1Q9NP08 348 aaPredicted RBP7.39□□□□□ -1.23
VPS41-214ENST00000490924 SLC52A1Q9NWF4 448 aa7.39□□□□□ -1.23
VPS41-214ENST00000490924 CUEDC1Q9NWM3 386 aaPredicted RBP7.39□□□□□ -1.23
VPS41-214ENST00000490924 MROH2AA6NES4 1674 aa7.38□□□□□ -1.23
VPS41-214ENST00000490924 DIP2BQ9P265 1576 aa7.38□□□□□ -1.23
VPS41-214ENST00000490924 WASLO00401 505 aaPredicted RBP7.38□□□□□ -1.23
VPS41-214ENST00000490924 CLN3Q13286 438 aa7.38□□□□□ -1.23
VPS41-214ENST00000490924 GNASQ5JWF2 1037 aa7.38□□□□□ -1.23
VPS41-214ENST00000490924 NBPF10Q6P3W6 841 aaKnown RBP7.38□□□□□ -1.23
VPS41-214ENST00000490924 ALYREFQ86V81 257 aaKnown RBP7.38□□□□□ -1.23
VPS41-214ENST00000490924 NBPF15Q8N660 670 aa7.38□□□□□ -1.23
VPS41-214ENST00000490924 DCAF5Q96JK2 942 aa7.38□□□□□ -1.23
VPS41-214ENST00000490924 TBC1D32Q96NH3 1257 aa7.38□□□□□ -1.23
VPS41-214ENST00000490924 MKL2Q9ULH7 1088 aa7.38□□□□□ -1.23
VPS41-214ENST00000490924 PCDHB11Q9Y5F2 797 aa7.38□□□□□ -1.23
VPS41-214ENST00000490924 CLTCQ00610 1675 aaKnown RBP7.38□□□□□ -1.23
VPS41-214ENST00000490924 GLI2P10070 1586 aa7.37□□□□□ -1.23
VPS41-214ENST00000490924 NEXMIFQ5QGS0 1516 aa7.37□□□□□ -1.23
VPS41-214ENST00000490924 AMPD1P23109 780 aa7.37□□□□□ -1.23
VPS41-214ENST00000490924 ERVK-9P63128 1117 aa7.37□□□□□ -1.23
VPS41-214ENST00000490924 PLA2G4EQ3MJ16 856 aa7.37□□□□□ -1.23
VPS41-214ENST00000490924 TCP11L2Q8N4U5 519 aa7.37□□□□□ -1.23
VPS41-214ENST00000490924 OXCT2Q9BYC2 517 aaPredicted RBP7.37□□□□□ -1.23
VPS41-214ENST00000490924 GDF2Q9UK05 429 aaPredicted RBP7.37□□□□□ -1.23
VPS41-214ENST00000490924 TULP4Q9NRJ4 1543 aa7.37□□□□□ -1.23
VPS41-214ENST00000490924 COL3A1P02461 1466 aaPredicted RBP7.36□□□□□ -1.23
VPS41-214ENST00000490924 BCAR3O75815 825 aa7.36□□□□□ -1.23
VPS41-214ENST00000490924 PTMSP20962 102 aa7.36□□□□□ -1.23
VPS41-214ENST00000490924 NR1H3Q13133 447 aa7.36□□□□□ -1.23
VPS41-214ENST00000490924 MVPQ14764 893 aaKnown RBP7.36□□□□□ -1.23
VPS41-214ENST00000490924 ALDH1L2Q3SY69 923 aa7.36□□□□□ -1.23
VPS41-214ENST00000490924 EFHC2Q5JST6 749 aa7.36□□□□□ -1.23
VPS41-214ENST00000490924 L1TD1Q5T7N2 865 aaKnown RBP7.36□□□□□ -1.23
VPS41-214ENST00000490924 TMEM214Q6NUQ4 689 aaKnown RBP7.36□□□□□ -1.23
VPS41-214ENST00000490924 KDF1Q8NAX2 398 aaPredicted RBP7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms