RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 COL15A1P39059 1388 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 GCKRQ14397 625 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 C20orf194Q5TEA3 1177 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 NBPF14Q5TI25 921 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 NBPF10Q6P3W6 841 aaKnown RBP8.67□□□□□ -1.02
SYNE1-229ENST00000490866 INTS5Q6P9B9 1019 aaKnown RBP8.67□□□□□ -1.02
SYNE1-229ENST00000490866 POTEBQ6S5H4 581 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 G2E3Q7L622 706 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 PPP1R42Q7Z4L9 355 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 DZIP3Q86Y13 1208 aaKnown RBP8.67□□□□□ -1.02
SYNE1-229ENST00000490866 NBPF15Q8N660 670 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 DOT1LQ8TEK3 1739 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 USP44Q9H0E7 712 aa8.67□□□□□ -1.02
SYNE1-229ENST00000490866 RGS17Q9UGC6 210 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-229ENST00000490866 PRAMEF22A3QJZ6 481 aa8.66□□□□□ -1.02
SYNE1-229ENST00000490866 GRM8O00222 908 aa8.66□□□□□ -1.02
SYNE1-229ENST00000490866 SSFA2P28290 1259 aa8.66□□□□□ -1.02
SYNE1-229ENST00000490866 RFC4P35249 363 aa8.66□□□□□ -1.02
SYNE1-229ENST00000490866 BAG6P46379 1132 aa8.66□□□□□ -1.02
SYNE1-229ENST00000490866 ATP8B2P98198 1209 aa8.66□□□□□ -1.02
SYNE1-229ENST00000490866 POTEAQ6S8J7 498 aa8.66□□□□□ -1.02
SYNE1-229ENST00000490866 KHSRPQ92945 711 aaKnown RBP eCLIP8.66□□□□□ -1.02
SYNE1-229ENST00000490866 NYXQ9GZU5 481 aa8.66□□□□□ -1.02
SYNE1-229ENST00000490866 NARFQ9UHQ1 456 aa8.66□□□□□ -1.02
SYNE1-229ENST00000490866 SBF2Q86WG5 1849 aa8.66□□□□□ -1.02
SYNE1-229ENST00000490866 TOGARAM1Q9Y4F4 1720 aa8.66□□□□□ -1.02
SYNE1-229ENST00000490866 NEURL1BA8MQ27 555 aa8.65□□□□□ -1.02
SYNE1-229ENST00000490866 RAB11FIP3O75154 756 aa8.65□□□□□ -1.02
SYNE1-229ENST00000490866 IRX6P78412 446 aaPredicted RBP8.65□□□□□ -1.02
SYNE1-229ENST00000490866 MTX1Q13505 466 aa8.65□□□□□ -1.02
SYNE1-229ENST00000490866 CAMK2BQ13554 666 aa8.65□□□□□ -1.02
SYNE1-229ENST00000490866 TXNRD1Q16881 649 aa8.65□□□□□ -1.02
SYNE1-229ENST00000490866 TPTE2Q6XPS3 522 aa8.65□□□□□ -1.02
SYNE1-229ENST00000490866 ERC1Q8IUD2 1116 aa8.65□□□□□ -1.02
SYNE1-229ENST00000490866 ANKRD44Q8N8A2 993 aa8.65□□□□□ -1.02
SYNE1-229ENST00000490866 ZBTB38Q8NAP3 1195 aaPredicted RBP8.65□□□□□ -1.02
SYNE1-229ENST00000490866 SLC4A9Q96Q91 983 aa8.65□□□□□ -1.02
SYNE1-229ENST00000490866 ARXQ96QS3 562 aa8.65□□□□□ -1.02
SYNE1-229ENST00000490866 ISCA1Q9BUE6 129 aa8.65□□□□□ -1.02
SYNE1-229ENST00000490866 ADCY9O60503 1353 aa8.64□□□□□ -1.03
SYNE1-229ENST00000490866 F6X3S4 739 aa8.64□□□□□ -1.03
SYNE1-229ENST00000490866 H7C1W4 665 aa8.64□□□□□ -1.03
SYNE1-229ENST00000490866 PCCAP05165 728 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-229ENST00000490866 PBX2P40425 430 aa8.64□□□□□ -1.03
SYNE1-229ENST00000490866 PROSER3Q2NL68 480 aa8.64□□□□□ -1.03
SYNE1-229ENST00000490866 NLGN1Q8N2Q7 840 aa8.64□□□□□ -1.03
SYNE1-229ENST00000490866 SETDB2Q96T68 719 aa8.64□□□□□ -1.03
SYNE1-229ENST00000490866 MYD88Q99836 296 aa8.64□□□□□ -1.03
SYNE1-229ENST00000490866 ANO8Q9HCE9 1232 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-229ENST00000490866 LHX6Q9UPM6 363 aa8.64□□□□□ -1.03
SYNE1-229ENST00000490866 ZBTB1Q9Y2K1 713 aa8.64□□□□□ -1.03
SYNE1-229ENST00000490866 CDHR2Q9BYE9 1310 aa8.63□□□□□ -1.03
SYNE1-229ENST00000490866 MAP3K9P80192 1104 aa8.63□□□□□ -1.03
SYNE1-229ENST00000490866 ITPK1Q13572 414 aa8.63□□□□□ -1.03
SYNE1-229ENST00000490866 ZNF34Q8IZ26 560 aa8.63□□□□□ -1.03
SYNE1-229ENST00000490866 UTP14AQ9BVJ6 771 aaKnown RBP8.63□□□□□ -1.03
SYNE1-229ENST00000490866 PLA2G12BQ9BX93 195 aa8.63□□□□□ -1.03
SYNE1-229ENST00000490866 DCTPP1Q9H773 170 aa8.63□□□□□ -1.03
SYNE1-229ENST00000490866 WDR70Q9NW82 654 aa8.63□□□□□ -1.03
SYNE1-229ENST00000490866 PDZRN3Q9UPQ7 1066 aa8.63□□□□□ -1.03
SYNE1-229ENST00000490866 ZNF330Q9Y3S2 320 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-229ENST00000490866 BTAF1O14981 1849 aa8.63□□□□□ -1.03
SYNE1-229ENST00000490866 LY75O60449 1722 aa8.63□□□□□ -1.03
SYNE1-229ENST00000490866 C5P01031 1676 aa8.62□□□□□ -1.03
SYNE1-229ENST00000490866 BRWD3Q6RI45 1802 aa8.62□□□□□ -1.03
SYNE1-229ENST00000490866 GNPATO15228 680 aa8.62□□□□□ -1.03
SYNE1-229ENST00000490866 ANXA1P04083 346 aa8.62□□□□□ -1.03
SYNE1-229ENST00000490866 SMC5Q8IY18 1101 aa8.62□□□□□ -1.03
SYNE1-229ENST00000490866 LINC00116Q8NCU8 138 aa8.62□□□□□ -1.03
SYNE1-229ENST00000490866 SSH3Q8TE77 659 aa8.62□□□□□ -1.03
SYNE1-229ENST00000490866 TFCP2L1Q9NZI6 479 aa8.62□□□□□ -1.03
SYNE1-229ENST00000490866 RGPD3A6NKT7 1758 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-229ENST00000490866 RGPD4Q7Z3J3 1758 aa8.62□□□□□ -1.03
SYNE1-229ENST00000490866 SH3TC1Q8TE82 1336 aa8.61□□□□□ -1.03
SYNE1-229ENST00000490866 IGKV5-2P06315 115 aa8.61□□□□□ -1.03
SYNE1-229ENST00000490866 GTF2E1P29083 439 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-229ENST00000490866 RABL6Q3YEC7 729 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-229ENST00000490866 SLC10A5Q5PT55 438 aa8.61□□□□□ -1.03
SYNE1-229ENST00000490866 FAM182BQ5T319 152 aa8.61□□□□□ -1.03
SYNE1-229ENST00000490866 B4GALNT3Q6L9W6 998 aa8.61□□□□□ -1.03
SYNE1-229ENST00000490866 CEP85Q6P2H3 762 aa8.61□□□□□ -1.03
SYNE1-229ENST00000490866 TTLL7Q6ZT98 887 aa8.61□□□□□ -1.03
SYNE1-229ENST00000490866 TICAM2Q86XR7 235 aa8.61□□□□□ -1.03
SYNE1-229ENST00000490866 SLC16A10Q8TF71 515 aa8.61□□□□□ -1.03
SYNE1-229ENST00000490866 MEIS3Q99687 375 aa8.61□□□□□ -1.03
SYNE1-229ENST00000490866 ZBTB3Q9H5J0 574 aa8.61□□□□□ -1.03
SYNE1-229ENST00000490866 TRMT112Q9UI30 125 aaKnown RBP8.61□□□□□ -1.03
SYNE1-229ENST00000490866 TBC1D2BQ9UPU7 963 aa8.61□□□□□ -1.03
SYNE1-229ENST00000490866 NOP58Q9Y2X3 529 aaKnown RBP8.61□□□□□ -1.03
SYNE1-229ENST00000490866 PCDHB15Q9Y5E8 787 aa8.61□□□□□ -1.03
SYNE1-229ENST00000490866 N4BP2Q86UW6 1770 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-229ENST00000490866 RREB1Q92766 1687 aa8.6□□□□□ -1.03
SYNE1-229ENST00000490866 SRGAP3O43295 1099 aa8.6□□□□□ -1.03
SYNE1-229ENST00000490866 PDE8AO60658 829 aa8.6□□□□□ -1.03
SYNE1-229ENST00000490866 CAMTA2O94983 1202 aa8.6□□□□□ -1.03
SYNE1-229ENST00000490866 NBPF7P0C2Y1 421 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-229ENST00000490866 G3BP1Q13283 466 aaKnown RBP eCLIP8.6□□□□□ -1.03
SYNE1-229ENST00000490866 CCDC57Q2TAC2 916 aa8.6□□□□□ -1.03
SYNE1-229ENST00000490866 NLRP10Q86W26 655 aa8.6□□□□□ -1.03
SYNE1-229ENST00000490866 ARHGEF1Q92888 912 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms