RNA–Protein interactions for RNA: ENST00000490348.1

SRGAP3-208, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 2

Gene SRGAP3, Length 1,554 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-208ENST00000490348 UTYO14607 1347 aa18.2■□□□□ 0.5
SRGAP3-208ENST00000490348 IPO8O15397 1037 aaKnown RBP18.2■□□□□ 0.5
SRGAP3-208ENST00000490348 ALDH1B1P30837 517 aa18.2■□□□□ 0.5
SRGAP3-208ENST00000490348 CCDC85AQ96PX6 553 aaPredicted RBP18.2■□□□□ 0.5
SRGAP3-208ENST00000490348 USP44Q9H0E7 712 aa18.2■□□□□ 0.5
SRGAP3-208ENST00000490348 CCT4P50991 539 aaKnown RBP18.19■□□□□ 0.5
SRGAP3-208ENST00000490348 EPHA10Q5JZY3 1008 aa18.19■□□□□ 0.5
SRGAP3-208ENST00000490348 ZKSCAN2Q63HK3 967 aa18.19■□□□□ 0.5
SRGAP3-208ENST00000490348 TTLL11Q8NHH1 800 aa18.19■□□□□ 0.5
SRGAP3-208ENST00000490348 CLUAP1Q96AJ1 413 aa18.19■□□□□ 0.5
SRGAP3-208ENST00000490348 KAZALD1Q96I82 304 aa18.19■□□□□ 0.5
SRGAP3-208ENST00000490348 SEC31BQ9NQW1 1179 aa18.19■□□□□ 0.5
SRGAP3-208ENST00000490348 C9orf78Q9NZ63 289 aaPredicted RBP18.19■□□□□ 0.5
SRGAP3-208ENST00000490348 SNED1Q8TER0 1413 aa18.19■□□□□ 0.5
SRGAP3-208ENST00000490348 HSP90B1P14625 803 aaKnown RBP18.18■□□□□ 0.5
SRGAP3-208ENST00000490348 FOXO4P98177 505 aa18.18■□□□□ 0.5
SRGAP3-208ENST00000490348 INTS3Q68E01 1043 aaKnown RBP18.18■□□□□ 0.5
SRGAP3-208ENST00000490348 DDX46Q7L014 1031 aaKnown RBP18.18■□□□□ 0.5
SRGAP3-208ENST00000490348 CELF1Q92879 486 aaKnown RBP18.18■□□□□ 0.5
SRGAP3-208ENST00000490348 RLBP1P12271 317 aa18.17■□□□□ 0.5
SRGAP3-208ENST00000490348 GRAPQ13588 217 aa18.17■□□□□ 0.5
SRGAP3-208ENST00000490348 ARHGAP27Q6ZUM4 889 aa18.17■□□□□ 0.5
SRGAP3-208ENST00000490348 GRAPLQ8TC17 118 aaPredicted RBP18.17■□□□□ 0.5
SRGAP3-208ENST00000490348 GREM2Q9H772 168 aa18.17■□□□□ 0.5
SRGAP3-208ENST00000490348 MYH3P11055 1940 aa18.17■□□□□ 0.5
SRGAP3-208ENST00000490348 NFKBIEO00221 500 aa18.17■□□□□ 0.5
SRGAP3-208ENST00000490348 PPEF1O14829 653 aaPredicted RBP18.17■□□□□ 0.5
SRGAP3-208ENST00000490348 CSF1RP07333 972 aa18.17■□□□□ 0.5
SRGAP3-208ENST00000490348 PRELPP51888 382 aa18.17■□□□□ 0.5
SRGAP3-208ENST00000490348 CCDC152Q4G0S7 254 aa18.17■□□□□ 0.5
SRGAP3-208ENST00000490348 SUCLG2Q96I99 432 aa18.17■□□□□ 0.5
SRGAP3-208ENST00000490348 RTL9Q8NET4 1388 aa18.15■□□□□ 0.5
SRGAP3-208ENST00000490348 RASSF7Q02833 373 aa18.15■□□□□ 0.5
SRGAP3-208ENST00000490348 FAM161AQ3B820 660 aa18.15■□□□□ 0.5
SRGAP3-208ENST00000490348 TMEM57Q8N5G2 664 aa18.15■□□□□ 0.5
SRGAP3-208ENST00000490348 FER1L6Q2WGJ9 1857 aa18.15■□□□□ 0.5
SRGAP3-208ENST00000490348 PLIN1O60240 522 aa18.14■□□□□ 0.49
SRGAP3-208ENST00000490348 BBOX1O75936 387 aa18.14■□□□□ 0.49
SRGAP3-208ENST00000490348 ATP6V0A2Q9Y487 856 aa18.14■□□□□ 0.49
SRGAP3-208ENST00000490348 MEIS3Q99687 375 aa18.13■□□□□ 0.49
SRGAP3-208ENST00000490348 RPS8P62241 208 aaKnown RBP18.13■□□□□ 0.49
SRGAP3-208ENST00000490348 CCDC93Q567U6 631 aa18.13■□□□□ 0.49
SRGAP3-208ENST00000490348 LMBR1LQ6UX01 489 aa18.13■□□□□ 0.49
SRGAP3-208ENST00000490348 DZIP1LQ8IYY4 767 aaKnown RBP18.13■□□□□ 0.49
SRGAP3-208ENST00000490348 ANKRD44Q8N8A2 993 aa18.13■□□□□ 0.49
SRGAP3-208ENST00000490348 BICC1Q9H694 974 aaKnown RBP18.13■□□□□ 0.49
SRGAP3-208ENST00000490348 LRRC37AA6NMS7 1700 aa18.12■□□□□ 0.49
SRGAP3-208ENST00000490348 CHD4Q14839 1912 aa18.12■□□□□ 0.49
SRGAP3-208ENST00000490348 ITGA6P23229 1130 aa18.12■□□□□ 0.49
SRGAP3-208ENST00000490348 SOGA3Q5TF21 947 aa18.12■□□□□ 0.49
SRGAP3-208ENST00000490348 PANK1Q8TE04 598 aa18.12■□□□□ 0.49
SRGAP3-208ENST00000490348 RABL6Q3YEC7 729 aaPredicted RBP18.11■□□□□ 0.49
SRGAP3-208ENST00000490348 SP8Q8IXZ3 490 aa18.11■□□□□ 0.49
SRGAP3-208ENST00000490348 SBF1O95248 1867 aa18.11■□□□□ 0.49
SRGAP3-208ENST00000490348 LTBP3Q9NS15 1303 aa18.1■□□□□ 0.49
SRGAP3-208ENST00000490348 FTSJ3Q8IY81 847 aaKnown RBP18.1■□□□□ 0.49
SRGAP3-208ENST00000490348 TAOK3Q9H2K8 898 aa18.1■□□□□ 0.49
SRGAP3-208ENST00000490348 UBTFL1P0CB47 393 aaPredicted RBP18.09■□□□□ 0.49
SRGAP3-208ENST00000490348 CC2D2BQ6DHV5 1058 aa18.09■□□□□ 0.49
SRGAP3-208ENST00000490348 RTKN2Q8IZC4 609 aa18.09■□□□□ 0.49
SRGAP3-208ENST00000490348 DUOX1Q9NRD9 1551 aa18.09■□□□□ 0.49
SRGAP3-208ENST00000490348 FKBP4Q02790 459 aaKnown RBP eCLIP18.08■□□□□ 0.49
SRGAP3-208ENST00000490348 C20orf194Q5TEA3 1177 aa18.08■□□□□ 0.49
SRGAP3-208ENST00000490348 TMC4Q7Z404 712 aa18.08■□□□□ 0.49
SRGAP3-208ENST00000490348 ANKRD18AQ8IVF6 992 aa18.08■□□□□ 0.49
SRGAP3-208ENST00000490348 CDC5LQ99459 802 aaKnown RBP18.08■□□□□ 0.49
SRGAP3-208ENST00000490348 CHMP3Q9Y3E7 222 aa18.08■□□□□ 0.49
SRGAP3-208ENST00000490348 C9orf131Q5VYM1 1079 aa18.08■□□□□ 0.48
SRGAP3-208ENST00000490348 PSMD1Q99460 953 aa18.08■□□□□ 0.48
SRGAP3-208ENST00000490348 ZNF277Q9NRM2 450 aaPredicted RBP18.08■□□□□ 0.48
SRGAP3-208ENST00000490348 LRRFIP2Q9Y608 721 aaKnown RBP18.08■□□□□ 0.48
SRGAP3-208ENST00000490348 LTBP1Q14766 1721 aa18.08■□□□□ 0.48
SRGAP3-208ENST00000490348 SPEF2Q9C093 1822 aa18.07■□□□□ 0.48
SRGAP3-208ENST00000490348 LMNB1P20700 586 aa18.07■□□□□ 0.48
SRGAP3-208ENST00000490348 GPSM2P81274 684 aa18.07■□□□□ 0.48
SRGAP3-208ENST00000490348 IFIT5Q13325 482 aaKnown RBP18.07■□□□□ 0.48
SRGAP3-208ENST00000490348 ITPRIPQ8IWB1 547 aa18.07■□□□□ 0.48
SRGAP3-208ENST00000490348 ZNF594Q96JF6 807 aaPredicted RBP18.07■□□□□ 0.48
SRGAP3-208ENST00000490348 BSDC1Q9NW68 430 aaPredicted RBP18.07■□□□□ 0.48
SRGAP3-208ENST00000490348 ANKRD18BA2A2Z9 1011 aa18.06■□□□□ 0.48
SRGAP3-208ENST00000490348 RTFDC1Q9BY42 306 aaPredicted RBP18.06■□□□□ 0.48
SRGAP3-208ENST00000490348 RNF181Q9P0P0 153 aa18.06■□□□□ 0.48
SRGAP3-208ENST00000490348 COL4A5P29400 1685 aa18.05■□□□□ 0.48
SRGAP3-208ENST00000490348 ZBTB7BO15156 539 aaPredicted RBP18.05■□□□□ 0.48
SRGAP3-208ENST00000490348 GNAI3P08754 354 aa18.05■□□□□ 0.48
SRGAP3-208ENST00000490348 DPP8Q6V1X1 898 aaPredicted RBP18.05■□□□□ 0.48
SRGAP3-208ENST00000490348 MPNDQ8N594 471 aa18.05■□□□□ 0.48
SRGAP3-208ENST00000490348 MINPP1Q9UNW1 487 aa18.05■□□□□ 0.48
SRGAP3-208ENST00000490348 CCDC88AQ3V6T2 1871 aa18.04■□□□□ 0.48
SRGAP3-208ENST00000490348 WTIPA6NIX2 430 aaPredicted RBP18.04■□□□□ 0.48
SRGAP3-208ENST00000490348 CCDC57Q2TAC2 916 aa18.04■□□□□ 0.48
SRGAP3-208ENST00000490348 GRIPAP1Q4V328 841 aa18.04■□□□□ 0.48
SRGAP3-208ENST00000490348 YY1P25490 414 aa18.04■□□□□ 0.48
SRGAP3-208ENST00000490348 IGHMBP2P38935 993 aaKnown RBP18.04■□□□□ 0.48
SRGAP3-208ENST00000490348 RFX5P48382 616 aaPredicted RBP18.04■□□□□ 0.48
SRGAP3-208ENST00000490348 POLLQ9UGP5 575 aa18.04■□□□□ 0.48
SRGAP3-208ENST00000490348 NSFL1CQ9UNZ2 370 aaKnown RBP18.04■□□□□ 0.48
SRGAP3-208ENST00000490348 COG6Q9Y2V7 657 aa18.04■□□□□ 0.48
SRGAP3-208ENST00000490348 MVPQ14764 893 aaKnown RBP18.03■□□□□ 0.48
SRGAP3-208ENST00000490348 KLHDC4Q8TBB5 520 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms