RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 UVSSAQ2YD98 709 aa5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 TP53INP2Q8IXH6 220 aa5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 NFATC2IPQ8NCF5 419 aa5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 UCN2Q96RP3 112 aa5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 SLC38A3Q99624 504 aa5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 C7orf69Q9H7B7 122 aa5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 SRA1Q9HD15 236 aaKnown RBP5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 NAGPAQ9UK23 515 aa5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 USP3Q9Y6I4 520 aa5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 BUD31P41223 144 aaPredicted RBP5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 FAM35AQ86V20 835 aa5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 RHPN1Q8TCX5 695 aa5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 TTC9Q92623 222 aa5.99□□□□□ -1.45
DEPDC1-204ENST00000489862 LZTS3O60299 673 aaPredicted RBP5.98□□□□□ -1.45
DEPDC1-204ENST00000489862 PSME1Q06323 249 aa5.98□□□□□ -1.45
DEPDC1-204ENST00000489862 GRIK5Q16478 980 aa5.98□□□□□ -1.45
DEPDC1-204ENST00000489862 TRIM42Q8IWZ5 723 aa5.98□□□□□ -1.45
DEPDC1-204ENST00000489862 FNBP4Q8N3X1 1017 aaPredicted RBP5.98□□□□□ -1.45
DEPDC1-204ENST00000489862 SHKBP1Q8TBC3 707 aa5.98□□□□□ -1.45
DEPDC1-204ENST00000489862 L3MBTL2Q969R5 705 aa5.98□□□□□ -1.45
DEPDC1-204ENST00000489862 PNMA5Q96PV4 448 aa5.98□□□□□ -1.45
DEPDC1-204ENST00000489862 ELMSAN1Q6PJG2 1045 aa5.97□□□□□ -1.45
DEPDC1-204ENST00000489862 GIMAP7Q8NHV1 300 aa5.97□□□□□ -1.45
DEPDC1-204ENST00000489862 VSIG10LQ86VR7 867 aa5.96□□□□□ -1.45
DEPDC1-204ENST00000489862 PROSER2Q86WR7 435 aaPredicted RBP5.96□□□□□ -1.45
DEPDC1-204ENST00000489862 MAP4K3Q8IVH8 894 aa5.96□□□□□ -1.45
DEPDC1-204ENST00000489862 UTP4Q969X6 686 aaKnown RBP5.96□□□□□ -1.45
DEPDC1-204ENST00000489862 ZNF358Q9NW07 568 aa5.96□□□□□ -1.45
DEPDC1-204ENST00000489862 KIAA1024Q9UPX6 916 aa5.96□□□□□ -1.45
DEPDC1-204ENST00000489862 USP17L3A6NCW0 530 aa5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 USP17L4A6NCW7 530 aa5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 BIN1O00499 593 aa5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 ZBTB7BO15156 539 aaPredicted RBP5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 ATP9BO43861 1147 aa5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 CPB1P15086 417 aa5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 TEAD4Q15561 434 aa5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 USP17L2Q6R6M4 530 aa5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 USP17L1Q7RTZ2 530 aa5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 HOMEZQ8IX15 550 aa5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 AGBL5Q8NDL9 886 aa5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 UBL7Q96S82 380 aaPredicted RBP5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 LPIN3Q9BQK8 851 aa5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 PIM2Q9P1W9 311 aa5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 CCDC39Q9UFE4 941 aa5.96□□□□□ -1.46
DEPDC1-204ENST00000489862 HMX2A2RU54 273 aa5.95□□□□□ -1.46
DEPDC1-204ENST00000489862 SFI1A8K8P3 1242 aa5.95□□□□□ -1.46
DEPDC1-204ENST00000489862 BACH1O14867 736 aa5.95□□□□□ -1.46
DEPDC1-204ENST00000489862 NOS2P35228 1153 aa5.95□□□□□ -1.46
DEPDC1-204ENST00000489862 CLDN10P78369 228 aa5.95□□□□□ -1.46
DEPDC1-204ENST00000489862 PLEKHM2Q8IWE5 1019 aa5.95□□□□□ -1.46
DEPDC1-204ENST00000489862 ARMC10Q8N2F6 343 aa5.95□□□□□ -1.46
DEPDC1-204ENST00000489862 GLMNQ92990 594 aa5.95□□□□□ -1.46
DEPDC1-204ENST00000489862 JAG2Q9Y219 1238 aa5.95□□□□□ -1.46
DEPDC1-204ENST00000489862 TBCELQ5QJ74 424 aa5.94□□□□□ -1.46
DEPDC1-204ENST00000489862 CLEC10AQ8IUN9 316 aa5.94□□□□□ -1.46
DEPDC1-204ENST00000489862 TNS4Q8IZW8 715 aa5.94□□□□□ -1.46
DEPDC1-204ENST00000489862 AGGF1Q8N302 714 aaeCLIP5.94□□□□□ -1.46
DEPDC1-204ENST00000489862 TPCN2Q8NHX9 752 aa5.94□□□□□ -1.46
DEPDC1-204ENST00000489862 MKRN1Q9UHC7 482 aaKnown RBP5.94□□□□□ -1.46
DEPDC1-204ENST00000489862 ZNF232Q9UNY5 417 aa5.94□□□□□ -1.46
DEPDC1-204ENST00000489862 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.94□□□□□ -1.46
DEPDC1-204ENST00000489862 PRNPP04156 253 aa5.93□□□□□ -1.46
DEPDC1-204ENST00000489862 TYRO3Q06418 890 aa5.93□□□□□ -1.46
DEPDC1-204ENST00000489862 CCDC102BQ68D86 513 aa5.93□□□□□ -1.46
DEPDC1-204ENST00000489862 TRIM50Q86XT4 487 aa5.93□□□□□ -1.46
DEPDC1-204ENST00000489862 TOX2Q96NM4 488 aa5.93□□□□□ -1.46
DEPDC1-204ENST00000489862 CSRNP1Q96S65 589 aa5.93□□□□□ -1.46
DEPDC1-204ENST00000489862 SCHIP1Q9P0W5 487 aaPredicted RBP5.93□□□□□ -1.46
DEPDC1-204ENST00000489862 TFIP11Q9UBB9 837 aaKnown RBP5.93□□□□□ -1.46
DEPDC1-204ENST00000489862 EPHA4P54764 986 aa5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 OGFOD1Q8N543 542 aa5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 ZDHHC1Q8WTX9 485 aa5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 RAPGEFL1Q9UHV5 662 aa5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 LEMD3Q9Y2U8 911 aa5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 WDR64B1ANS9 1081 aa5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 HOXA10P31260 410 aaPredicted RBP5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 ATP1A2P50993 1020 aa5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 PERM1Q5SV97 790 aa5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 SLC9A9Q8IVB4 645 aa5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 ZSCAN18Q8TBC5 510 aaPredicted RBP5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 C7orf43Q8WVR3 580 aa5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 FAM83CQ9BQN1 747 aa5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 ATG3Q9NT62 314 aa5.92□□□□□ -1.46
DEPDC1-204ENST00000489862 A6NJR5 290 aa5.91□□□□□ -1.46
DEPDC1-204ENST00000489862 GRNP28799 593 aaKnown RBP5.91□□□□□ -1.46
DEPDC1-204ENST00000489862 SH3PXD2AQ5TCZ1 1133 aa5.91□□□□□ -1.46
DEPDC1-204ENST00000489862 C1orf53Q5VUE5 145 aa5.91□□□□□ -1.46
DEPDC1-204ENST00000489862 ZNF594Q96JF6 807 aaPredicted RBP5.91□□□□□ -1.46
DEPDC1-204ENST00000489862 CALR3Q96L12 384 aaKnown RBP5.91□□□□□ -1.46
DEPDC1-204ENST00000489862 PALM3A6NDB9 673 aaPredicted RBP5.9□□□□□ -1.46
DEPDC1-204ENST00000489862 PAPLNO95428 1278 aa5.9□□□□□ -1.46
DEPDC1-204ENST00000489862 LARGE2Q8N3Y3 721 aa5.9□□□□□ -1.46
DEPDC1-204ENST00000489862 BHLHE22Q8NFJ8 381 aaPredicted RBP5.9□□□□□ -1.46
DEPDC1-204ENST00000489862 MAFBQ9Y5Q3 323 aaPredicted RBP5.9□□□□□ -1.46
DEPDC1-204ENST00000489862 SERTM1A2A2V5 107 aa5.89□□□□□ -1.47
DEPDC1-204ENST00000489862 DKK1O94907 266 aa5.89□□□□□ -1.47
DEPDC1-204ENST00000489862 NFKB1P19838 968 aa5.89□□□□□ -1.47
DEPDC1-204ENST00000489862 CCINQ13939 588 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 128.6 ms