RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 TWISTNBQ3B726 338 aaPredicted RBP29.63■■■□□ 2.33
COL9A3-213ENST00000489045 ADAMTSL1Q8N6G6 1762 aa29.62■■■□□ 2.33
COL9A3-213ENST00000489045 SF3B3Q15393 1217 aaKnown RBP29.62■■■□□ 2.33
COL9A3-213ENST00000489045 AOC3Q16853 763 aa29.62■■■□□ 2.33
COL9A3-213ENST00000489045 DPP8Q6V1X1 898 aaPredicted RBP29.62■■■□□ 2.33
COL9A3-213ENST00000489045 RTFDC1Q9BY42 306 aaPredicted RBP29.62■■■□□ 2.33
COL9A3-213ENST00000489045 HACL1Q9UJ83 578 aa29.62■■■□□ 2.33
COL9A3-213ENST00000489045 DUOX1Q9NRD9 1551 aa29.61■■■□□ 2.33
COL9A3-213ENST00000489045 NIM1KQ8IY84 436 aa29.61■■■□□ 2.33
COL9A3-213ENST00000489045 MPNDQ8N594 471 aa29.61■■■□□ 2.33
COL9A3-213ENST00000489045 ZBTB38Q8NAP3 1195 aaPredicted RBP29.61■■■□□ 2.33
COL9A3-213ENST00000489045 SUPT20HQ8NEM7 779 aa29.61■■■□□ 2.33
COL9A3-213ENST00000489045 METTL22Q9BUU2 404 aaPredicted RBP29.61■■■□□ 2.33
COL9A3-213ENST00000489045 STK31Q9BXU1 1019 aa29.61■■■□□ 2.33
COL9A3-213ENST00000489045 GJA3Q9Y6H8 435 aa29.61■■■□□ 2.33
COL9A3-213ENST00000489045 FANCIQ9NVI1 1328 aa29.61■■■□□ 2.33
COL9A3-213ENST00000489045 LTBP1Q14766 1721 aa29.6■■■□□ 2.33
COL9A3-213ENST00000489045 TMC4Q7Z404 712 aa29.6■■■□□ 2.33
COL9A3-213ENST00000489045 CCDC191Q8NCU4 936 aa29.6■■■□□ 2.33
COL9A3-213ENST00000489045 CACNA1FO60840 1977 aa29.59■■■□□ 2.33
COL9A3-213ENST00000489045 LDHDQ86WU2 507 aa29.59■■■□□ 2.33
COL9A3-213ENST00000489045 VPS33BQ9H267 617 aa29.59■■■□□ 2.33
COL9A3-213ENST00000489045 MAP3K2Q9Y2U5 619 aa29.59■■■□□ 2.33
COL9A3-213ENST00000489045 EPHX2P34913 555 aa29.58■■■□□ 2.33
COL9A3-213ENST00000489045 EAPPQ56P03 285 aaPredicted RBP29.58■■■□□ 2.33
COL9A3-213ENST00000489045 FAM9BQ8IZU0 186 aa29.58■■■□□ 2.33
COL9A3-213ENST00000489045 CELF1Q92879 486 aaKnown RBP29.58■■■□□ 2.33
COL9A3-213ENST00000489045 KLRG1Q96E93 195 aa29.58■■■□□ 2.33
COL9A3-213ENST00000489045 CWC25Q9NXE8 425 aaPredicted RBP29.58■■■□□ 2.33
COL9A3-213ENST00000489045 PCCAP05165 728 aaPredicted RBP29.57■■■□□ 2.32
COL9A3-213ENST00000489045 KSR2Q6VAB6 950 aa29.57■■■□□ 2.32
COL9A3-213ENST00000489045 WDR63Q8IWG1 891 aa29.57■■■□□ 2.32
COL9A3-213ENST00000489045 PI4KAP2A4QPH2 592 aa29.56■■■□□ 2.32
COL9A3-213ENST00000489045 PI4KAP1Q8N8J0 262 aa29.56■■■□□ 2.32
COL9A3-213ENST00000489045 MYH3P11055 1940 aa29.55■■■□□ 2.32
COL9A3-213ENST00000489045 G2E3Q7L622 706 aa29.55■■■□□ 2.32
COL9A3-213ENST00000489045 HSP90B1P14625 803 aaKnown RBP29.54■■■□□ 2.32
COL9A3-213ENST00000489045 JARID2Q92833 1246 aaPredicted RBP29.54■■■□□ 2.32
COL9A3-213ENST00000489045 SLC4A2P04920 1241 aa29.53■■■□□ 2.32
COL9A3-213ENST00000489045 KIAA2012Q0VF49 1180 aa29.53■■■□□ 2.32
COL9A3-213ENST00000489045 IGKV5-2P06315 115 aa29.52■■■□□ 2.32
COL9A3-213ENST00000489045 LMOD1P29536 600 aaPredicted RBP29.52■■■□□ 2.32
COL9A3-213ENST00000489045 SCNN1DP51172 638 aa29.52■■■□□ 2.32
COL9A3-213ENST00000489045 PNMA8AQ86V59 439 aaPredicted RBP29.52■■■□□ 2.32
COL9A3-213ENST00000489045 ZNRF3Q9ULT6 936 aa29.52■■■□□ 2.32
COL9A3-213ENST00000489045 CLEC11AQ9Y240 323 aa29.52■■■□□ 2.32
COL9A3-213ENST00000489045 PDE8AO60658 829 aa29.5■■■□□ 2.31
COL9A3-213ENST00000489045 NEXNQ0ZGT2 675 aa29.5■■■□□ 2.31
COL9A3-213ENST00000489045 SEC31BQ9NQW1 1179 aa29.5■■■□□ 2.31
COL9A3-213ENST00000489045 NSFL1CQ9UNZ2 370 aaKnown RBP29.5■■■□□ 2.31
COL9A3-213ENST00000489045 CDHR2Q9BYE9 1310 aa29.49■■■□□ 2.31
COL9A3-213ENST00000489045 RPS8P62241 208 aaKnown RBP29.49■■■□□ 2.31
COL9A3-213ENST00000489045 EXOSC9Q06265 439 aaKnown RBP29.49■■■□□ 2.31
COL9A3-213ENST00000489045 CXCL9Q07325 125 aa29.49■■■□□ 2.31
COL9A3-213ENST00000489045 SPINK5Q9NQ38 1064 aaPredicted RBP29.49■■■□□ 2.31
COL9A3-213ENST00000489045 PASKQ96RG2 1323 aa29.48■■■□□ 2.31
COL9A3-213ENST00000489045 SPEF2Q9C093 1822 aa29.48■■■□□ 2.31
COL9A3-213ENST00000489045 VAMP4O75379 141 aa29.48■■■□□ 2.31
COL9A3-213ENST00000489045 EPS15P42566 896 aa29.48■■■□□ 2.31
COL9A3-213ENST00000489045 GPSM2P81274 684 aa29.48■■■□□ 2.31
COL9A3-213ENST00000489045 FLIIQ13045 1269 aa29.48■■■□□ 2.31
COL9A3-213ENST00000489045 CWF19L2Q2TBE0 894 aaKnown RBP29.48■■■□□ 2.31
COL9A3-213ENST00000489045 CCDC152Q4G0S7 254 aa29.48■■■□□ 2.31
COL9A3-213ENST00000489045 JMYQ8N9B5 988 aa29.48■■■□□ 2.31
COL9A3-213ENST00000489045 CCDC85AQ96PX6 553 aaPredicted RBP29.47■■■□□ 2.31
COL9A3-213ENST00000489045 ITGBL1O95965 494 aaPredicted RBP29.46■■■□□ 2.31
COL9A3-213ENST00000489045 CREBZFQ9NS37 354 aa29.46■■■□□ 2.31
COL9A3-213ENST00000489045 NEURL1BA8MQ27 555 aa29.45■■■□□ 2.31
COL9A3-213ENST00000489045 WASHC4Q2M389 1173 aa29.45■■■□□ 2.31
COL9A3-213ENST00000489045 MAP1SQ66K74 1059 aaPredicted RBP29.45■■■□□ 2.31
COL9A3-213ENST00000489045 CIAPIN1Q6FI81 312 aa29.45■■■□□ 2.31
COL9A3-213ENST00000489045 POLLQ9UGP5 575 aa29.45■■■□□ 2.31
COL9A3-213ENST00000489045 C6orf229H3BNL8 230 aa29.44■■■□□ 2.3
COL9A3-213ENST00000489045 RAD17O75943 681 aa29.44■■■□□ 2.3
COL9A3-213ENST00000489045 FKBP5Q13451 457 aaPredicted RBP29.44■■■□□ 2.3
COL9A3-213ENST00000489045 MYH16Q9H6N6 1097 aa29.44■■■□□ 2.3
COL9A3-213ENST00000489045 YDJCA8MPS7 323 aa29.43■■■□□ 2.3
COL9A3-213ENST00000489045 CTSWP56202 376 aa29.43■■■□□ 2.3
COL9A3-213ENST00000489045 GPRC5DQ9NZD1 345 aa29.43■■■□□ 2.3
COL9A3-213ENST00000489045 GMPSP49915 693 aaPredicted RBP29.42■■■□□ 2.3
COL9A3-213ENST00000489045 CNTROBQ8N137 903 aa29.42■■■□□ 2.3
COL9A3-213ENST00000489045 RIMBP2O15034 1052 aa29.41■■■□□ 2.3
COL9A3-213ENST00000489045 TNIP1Q15025 636 aa29.41■■■□□ 2.3
COL9A3-213ENST00000489045 USP50Q70EL3 339 aaPredicted RBP29.41■■■□□ 2.3
COL9A3-213ENST00000489045 TBC1D16Q8TBP0 767 aa29.41■■■□□ 2.3
COL9A3-213ENST00000489045 DNAAF4Q8WXU2 420 aa29.41■■■□□ 2.3
COL9A3-213ENST00000489045 GPR101Q96P66 508 aaPredicted RBP29.41■■■□□ 2.3
COL9A3-213ENST00000489045 DBNDD1Q9H9R9 158 aa29.41■■■□□ 2.3
COL9A3-213ENST00000489045 UBE3BQ7Z3V4 1068 aa29.4■■■□□ 2.3
COL9A3-213ENST00000489045 EYA3Q99504 573 aa29.4■■■□□ 2.3
COL9A3-213ENST00000489045 ADARB2Q9NS39 739 aaKnown RBP29.4■■■□□ 2.3
COL9A3-213ENST00000489045 PODXL2Q9NZ53 605 aa29.4■■■□□ 2.3
COL9A3-213ENST00000489045 H7C1W4 665 aa29.39■■■□□ 2.3
COL9A3-213ENST00000489045 ANKRD18AQ8IVF6 992 aa29.39■■■□□ 2.3
COL9A3-213ENST00000489045 PCNTO95613 3336 aa29.38■■■□□ 2.29
COL9A3-213ENST00000489045 GCKRQ14397 625 aa29.38■■■□□ 2.29
COL9A3-213ENST00000489045 TTLL11Q8NHH1 800 aa29.38■■■□□ 2.29
COL9A3-213ENST00000489045 BCL2L13Q9BXK5 485 aa29.38■■■□□ 2.29
COL9A3-213ENST00000489045 ANKIB1Q9P2G1 1089 aa29.38■■■□□ 2.29
COL9A3-213ENST00000489045 MKRN1Q9UHC7 482 aaKnown RBP29.38■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms