RNA–Protein interactions for RNA: ENST00000488865.2

RNF220-216, Transcript of ring finger protein 220, human

TSL 2

Gene RNF220, Length 860 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF220-216	ENST00000488865	CALD1	Q05682	793 aa	Known RBP	33.74	■■■□□ 2.99
RNF220-216	ENST00000488865	IFT57	Q9NWB7	429 aa		33.74	■■■□□ 2.99
RNF220-216	ENST00000488865	ZNRF3	Q9ULT6	936 aa		33.74	■■■□□ 2.99
RNF220-216	ENST00000488865	EPS15	P42566	896 aa		33.73	■■■□□ 2.99
RNF220-216	ENST00000488865	GNAI1	P63096	354 aa		33.72	■■■□□ 2.99
RNF220-216	ENST00000488865	TRIM28	Q13263	835 aa	Known RBP	33.72	■■■□□ 2.99
RNF220-216	ENST00000488865	USP50	Q70EL3	339 aa	Predicted RBP	33.72	■■■□□ 2.99
RNF220-216	ENST00000488865	DDX60	Q8IY21	1712 aa	Known RBP	33.7	■■■□□ 2.99
RNF220-216	ENST00000488865	ATP5J2-PTCD1	G3V325	749 aa		33.7	■■■□□ 2.99
RNF220-216	ENST00000488865	CXCL9	Q07325	125 aa		33.7	■■■□□ 2.99
RNF220-216	ENST00000488865	KIAA2012	Q0VF49	1180 aa		33.7	■■■□□ 2.99
RNF220-216	ENST00000488865	SF3B3	Q15393	1217 aa	Known RBP	33.7	■■■□□ 2.99
RNF220-216	ENST00000488865	FAM89A	Q96GI7	184 aa		33.7	■■■□□ 2.99
RNF220-216	ENST00000488865	ZNF428	Q96B54	188 aa		33.68	■■■□□ 2.98
RNF220-216	ENST00000488865	GPRC5D	Q9NZD1	345 aa		33.68	■■■□□ 2.98
RNF220-216	ENST00000488865	VEGFB	P49765	207 aa		33.67	■■■□□ 2.98
RNF220-216	ENST00000488865	TNS4	Q8IZW8	715 aa		33.67	■■■□□ 2.98
RNF220-216	ENST00000488865	TAF1	P21675	1872 aa		33.67	■■■□□ 2.98
RNF220-216	ENST00000488865	LRRC37A	A6NMS7	1700 aa		33.66	■■■□□ 2.98
RNF220-216	ENST00000488865	ADARB2	Q9NS39	739 aa	Known RBP	33.66	■■■□□ 2.98
RNF220-216	ENST00000488865	RASSF10	A6NK89	507 aa		33.65	■■■□□ 2.98
RNF220-216	ENST00000488865	GOLGA2	Q08379	1002 aa		33.65	■■■□□ 2.98
RNF220-216	ENST00000488865	RIC3	Q7Z5B4	369 aa		33.65	■■■□□ 2.98
RNF220-216	ENST00000488865	CIAPIN1	Q6FI81	312 aa		33.64	■■■□□ 2.98
RNF220-216	ENST00000488865	CDHR2	Q9BYE9	1310 aa		33.63	■■■□□ 2.97
RNF220-216	ENST00000488865	TNIP1	Q15025	636 aa		33.63	■■■□□ 2.97
RNF220-216	ENST00000488865	IRS4	O14654	1257 aa	Predicted RBP	33.62	■■■□□ 2.97
RNF220-216	ENST00000488865	DEFB115	Q30KQ5	88 aa		33.62	■■■□□ 2.97
RNF220-216	ENST00000488865	CELF1	Q92879	486 aa	Known RBP	33.62	■■■□□ 2.97
RNF220-216	ENST00000488865	CHMP4A	Q9BY43	222 aa		33.62	■■■□□ 2.97
RNF220-216	ENST00000488865	PHAX	Q9H814	394 aa	Known RBP	33.62	■■■□□ 2.97
RNF220-216	ENST00000488865	DUOX1	Q9NRD9	1551 aa		33.62	■■■□□ 2.97
RNF220-216	ENST00000488865	ELL2	O00472	640 aa	Predicted RBP	33.61	■■■□□ 2.97
RNF220-216	ENST00000488865	GMPS	P49915	693 aa	Predicted RBP	33.61	■■■□□ 2.97
RNF220-216	ENST00000488865	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	33.6	■■■□□ 2.97
RNF220-216	ENST00000488865	C8orf58	Q8NAV2	365 aa		33.6	■■■□□ 2.97
RNF220-216	ENST00000488865	RAD17	O75943	681 aa		33.59	■■■□□ 2.97
RNF220-216	ENST00000488865	HSP90B1	P14625	803 aa	Known RBP	33.59	■■■□□ 2.97
RNF220-216	ENST00000488865	RTL5	Q5HYW3	569 aa	Predicted RBP	33.59	■■■□□ 2.97
RNF220-216	ENST00000488865	ABT1	Q9ULW3	272 aa	Known RBP	33.59	■■■□□ 2.97
RNF220-216	ENST00000488865	NSFL1C	Q9UNZ2	370 aa	Known RBP	33.58	■■■□□ 2.97
RNF220-216	ENST00000488865	BCL2L13	Q9BXK5	485 aa		33.57	■■■□□ 2.96
RNF220-216	ENST00000488865	YDJC	A8MPS7	323 aa		33.56	■■■□□ 2.96
RNF220-216	ENST00000488865	FOXN1	O15353	648 aa		33.56	■■■□□ 2.96
RNF220-216	ENST00000488865	WASHC4	Q2M389	1173 aa		33.56	■■■□□ 2.96
RNF220-216	ENST00000488865	CCDC30	Q5VVM6	783 aa		33.56	■■■□□ 2.96
RNF220-216	ENST00000488865	CCDC191	Q8NCU4	936 aa		33.56	■■■□□ 2.96
RNF220-216	ENST00000488865	AIDA	Q96BJ3	306 aa		33.56	■■■□□ 2.96
RNF220-216	ENST00000488865	RPS8	P62241	208 aa	Known RBP	33.55	■■■□□ 2.96
RNF220-216	ENST00000488865	MYD88	Q99836	296 aa		33.55	■■■□□ 2.96
RNF220-216	ENST00000488865	PGAP2	Q9UHJ9	254 aa		33.55	■■■□□ 2.96
RNF220-216	ENST00000488865	TRPM7	Q96QT4	1865 aa		33.54	■■■□□ 2.96
RNF220-216	ENST00000488865	DDX58	O95786	925 aa	Known RBP	33.54	■■■□□ 2.96
RNF220-216	ENST00000488865	FMR1	Q06787	632 aa	Known RBP eCLIP	33.54	■■■□□ 2.96
RNF220-216	ENST00000488865	WBP1L	Q9NX94	342 aa		33.54	■■■□□ 2.96
RNF220-216	ENST00000488865	WDR33	Q9C0J8	1336 aa	Known RBP	33.53	■■■□□ 2.96
RNF220-216	ENST00000488865	GPSM2	P81274	684 aa		33.53	■■■□□ 2.96
RNF220-216	ENST00000488865	ZC3H15	Q8WU90	426 aa	Known RBP	33.53	■■■□□ 2.96
RNF220-216	ENST00000488865	POLL	Q9UGP5	575 aa		33.53	■■■□□ 2.96
RNF220-216	ENST00000488865	COL4A1	P02462	1669 aa		33.52	■■■□□ 2.96
RNF220-216	ENST00000488865	TRAF5	O00463	557 aa		33.52	■■■□□ 2.96
RNF220-216	ENST00000488865	PCCA	P05165	728 aa	Predicted RBP	33.52	■■■□□ 2.96
RNF220-216	ENST00000488865	CST9	Q5W186	159 aa		33.52	■■■□□ 2.96
RNF220-216	ENST00000488865	METTL22	Q9BUU2	404 aa	Predicted RBP	33.52	■■■□□ 2.96
RNF220-216	ENST00000488865	PRDM10	Q9NQV6	1147 aa		33.52	■■■□□ 2.96
RNF220-216	ENST00000488865	C6orf229	H3BNL8	230 aa		33.51	■■■□□ 2.95
RNF220-216	ENST00000488865	CTCF	P49711	727 aa	Predicted RBP	33.51	■■■□□ 2.95
RNF220-216	ENST00000488865	EYA3	Q99504	573 aa		33.51	■■■□□ 2.95
RNF220-216	ENST00000488865	CWC25	Q9NXE8	425 aa	Predicted RBP	33.51	■■■□□ 2.95
RNF220-216	ENST00000488865	CNOT7	Q9UIV1	285 aa	Known RBP	33.51	■■■□□ 2.95
RNF220-216	ENST00000488865	CCDC27	Q2M243	656 aa		33.5	■■■□□ 2.95
RNF220-216	ENST00000488865	DPF2	Q92785	391 aa		33.5	■■■□□ 2.95
RNF220-216	ENST00000488865		H7C1D1	291 aa		33.49	■■■□□ 2.95
RNF220-216	ENST00000488865	TSPYL6	Q8N831	410 aa		33.49	■■■□□ 2.95
RNF220-216	ENST00000488865	RIMBP2	O15034	1052 aa		33.48	■■■□□ 2.95
RNF220-216	ENST00000488865	PDE8A	O60658	829 aa		33.48	■■■□□ 2.95
RNF220-216	ENST00000488865	ECE1	P42892	770 aa		33.48	■■■□□ 2.95
RNF220-216	ENST00000488865	HIRA	P54198	1017 aa	Predicted RBP	33.48	■■■□□ 2.95
RNF220-216	ENST00000488865	MAP2K1	Q02750	393 aa	Predicted RBP	33.48	■■■□□ 2.95
RNF220-216	ENST00000488865	CCDC152	Q4G0S7	254 aa		33.48	■■■□□ 2.95
RNF220-216	ENST00000488865	CCDC184	Q52MB2	194 aa		33.48	■■■□□ 2.95
RNF220-216	ENST00000488865	TBC1D16	Q8TBP0	767 aa		33.48	■■■□□ 2.95
RNF220-216	ENST00000488865	DBNDD1	Q9H9R9	158 aa		33.48	■■■□□ 2.95
RNF220-216	ENST00000488865	SEC31B	Q9NQW1	1179 aa		33.48	■■■□□ 2.95
RNF220-216	ENST00000488865	PODXL2	Q9NZ53	605 aa		33.48	■■■□□ 2.95
RNF220-216	ENST00000488865	TLL2	Q9Y6L7	1015 aa		33.48	■■■□□ 2.95
RNF220-216	ENST00000488865	PSMD14	O00487	310 aa		33.46	■■■□□ 2.95
RNF220-216	ENST00000488865	CAPN15	O75808	1086 aa		33.46	■■■□□ 2.95
RNF220-216	ENST00000488865	MICALL2	Q8IY33	904 aa		33.46	■■■□□ 2.95
RNF220-216	ENST00000488865	TRPM4	Q8TD43	1214 aa		33.46	■■■□□ 2.95
RNF220-216	ENST00000488865	CAPNS2	Q96L46	248 aa		33.46	■■■□□ 2.95
RNF220-216	ENST00000488865	GLIS2	Q9BZE0	524 aa	Predicted RBP	33.46	■■■□□ 2.95
RNF220-216	ENST00000488865	MAP3K2	Q9Y2U5	619 aa		33.45	■■■□□ 2.95
RNF220-216	ENST00000488865	ZBTB12	Q9Y330	459 aa	Predicted RBP	33.45	■■■□□ 2.95
RNF220-216	ENST00000488865	ECE2	O60344	883 aa		33.44	■■■□□ 2.94
RNF220-216	ENST00000488865	RPS12	P25398	132 aa	Known RBP	33.44	■■■□□ 2.94
RNF220-216	ENST00000488865	KSR2	Q6VAB6	950 aa		33.44	■■■□□ 2.94
RNF220-216	ENST00000488865	WWC1	Q8IX03	1113 aa		33.44	■■■□□ 2.94
RNF220-216	ENST00000488865	TSR2	Q969E8	191 aa	Known RBP	33.44	■■■□□ 2.94
RNF220-216	ENST00000488865	SHTN1	A0MZ66	631 aa		33.43	■■■□□ 2.94

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