RNA–Protein interactions for RNA: ENST00000488848.1

USP11-209, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 2

Gene USP11, Length 904 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-209ENST00000488848 ARXQ96QS3 562 aa13.26□□□□□ -0.29
USP11-209ENST00000488848 LRRCC1Q9C099 1032 aa13.26□□□□□ -0.29
USP11-209ENST00000488848 OSBPL3Q9H4L5 887 aa13.26□□□□□ -0.29
USP11-209ENST00000488848 GPR108Q9NPR9 543 aa13.26□□□□□ -0.29
USP11-209ENST00000488848 ANKRD31Q8N7Z5 1873 aa13.25□□□□□ -0.29
USP11-209ENST00000488848 A0A1B0GUL6 1792 aa13.25□□□□□ -0.29
USP11-209ENST00000488848 AOX1Q06278 1338 aa13.25□□□□□ -0.29
USP11-209ENST00000488848 DDR1Q08345 913 aa13.25□□□□□ -0.29
USP11-209ENST00000488848 SMIM5Q71RC9 77 aa13.25□□□□□ -0.29
USP11-209ENST00000488848 NBPF5PQ86XG9 351 aaPredicted RBP13.25□□□□□ -0.29
USP11-209ENST00000488848 SURF6O75683 361 aaKnown RBP13.24□□□□□ -0.29
USP11-209ENST00000488848 PDE4AP27815 886 aa13.24□□□□□ -0.29
USP11-209ENST00000488848 IL15P40933 162 aaPredicted RBP13.24□□□□□ -0.29
USP11-209ENST00000488848 FAM161AQ3B820 660 aa13.24□□□□□ -0.29
USP11-209ENST00000488848 CCDC152Q4G0S7 254 aa13.24□□□□□ -0.29
USP11-209ENST00000488848 PRR5LQ6MZQ0 368 aa13.24□□□□□ -0.29
USP11-209ENST00000488848 SYNE4Q8N205 404 aa13.24□□□□□ -0.29
USP11-209ENST00000488848 RHPN1Q8TCX5 695 aa13.24□□□□□ -0.29
USP11-209ENST00000488848 EXOC6BQ9Y2D4 811 aa13.24□□□□□ -0.29
USP11-209ENST00000488848 KIF13BQ9NQT8 1826 aa13.24□□□□□ -0.29
USP11-209ENST00000488848 ARAP2Q8WZ64 1704 aa13.24□□□□□ -0.29
USP11-209ENST00000488848 LRRC37AA6NMS7 1700 aa13.23□□□□□ -0.29
USP11-209ENST00000488848 EYA2O00167 538 aa13.23□□□□□ -0.29
USP11-209ENST00000488848 ZBTB22O15209 634 aa13.23□□□□□ -0.29
USP11-209ENST00000488848 IFIT5Q13325 482 aaKnown RBP13.23□□□□□ -0.29
USP11-209ENST00000488848 CCDC57Q2TAC2 916 aa13.23□□□□□ -0.29
USP11-209ENST00000488848 ERFEQ4G0M1 354 aa13.23□□□□□ -0.29
USP11-209ENST00000488848 ATG9AQ7Z3C6 839 aa13.23□□□□□ -0.29
USP11-209ENST00000488848 CNBD1Q8NA66 436 aa13.23□□□□□ -0.29
USP11-209ENST00000488848 GREM2Q9H772 168 aa13.23□□□□□ -0.29
USP11-209ENST00000488848 STAP2Q9UGK3 403 aa13.23□□□□□ -0.29
USP11-209ENST00000488848 SASH1O94885 1247 aa13.22□□□□□ -0.29
USP11-209ENST00000488848 ITGA6P23229 1130 aa13.22□□□□□ -0.29
USP11-209ENST00000488848 HOXA10P31260 410 aaPredicted RBP13.22□□□□□ -0.29
USP11-209ENST00000488848 ANKRD45Q5TZF3 282 aa13.22□□□□□ -0.29
USP11-209ENST00000488848 PELP1Q8IZL8 1130 aaKnown RBP13.22□□□□□ -0.29
USP11-209ENST00000488848 JARID2Q92833 1246 aaPredicted RBP13.22□□□□□ -0.29
USP11-209ENST00000488848 ANKRD18BA2A2Z9 1011 aa13.21□□□□□ -0.29
USP11-209ENST00000488848 SERPINB2P05120 415 aa13.21□□□□□ -0.29
USP11-209ENST00000488848 HCLS1P14317 486 aaPredicted RBP13.21□□□□□ -0.29
USP11-209ENST00000488848 G3BP1Q13283 466 aaKnown RBP eCLIP13.21□□□□□ -0.29
USP11-209ENST00000488848 NUTM1Q86Y26 1132 aa13.21□□□□□ -0.29
USP11-209ENST00000488848 NLRP3Q96P20 1036 aa13.21□□□□□ -0.29
USP11-209ENST00000488848 PA2G4Q9UQ80 394 aaKnown RBP13.21□□□□□ -0.29
USP11-209ENST00000488848 RIPOR2Q9Y4F9 1068 aa13.21□□□□□ -0.29
USP11-209ENST00000488848 ZNF609O15014 1411 aa13.21□□□□□ -0.3
USP11-209ENST00000488848 C10orf71Q711Q0 1435 aa13.21□□□□□ -0.3
USP11-209ENST00000488848 DLEC1Q9Y238 1755 aa13.2□□□□□ -0.3
USP11-209ENST00000488848 ST5P78524 1137 aa13.2□□□□□ -0.3
USP11-209ENST00000488848 RTL5Q5HYW3 569 aaPredicted RBP13.2□□□□□ -0.3
USP11-209ENST00000488848 PLEKHM2Q8IWE5 1019 aa13.2□□□□□ -0.3
USP11-209ENST00000488848 VGLL2Q8N8G2 317 aa13.2□□□□□ -0.3
USP11-209ENST00000488848 CDC5LQ99459 802 aaKnown RBP13.2□□□□□ -0.3
USP11-209ENST00000488848 BRIP1Q9BX63 1249 aa13.2□□□□□ -0.3
USP11-209ENST00000488848 LNPKQ9C0E8 428 aa13.2□□□□□ -0.3
USP11-209ENST00000488848 COL4A1P02462 1669 aa13.2□□□□□ -0.3
USP11-209ENST00000488848 COL11A2P13942 1736 aaPredicted RBP13.19□□□□□ -0.3
USP11-209ENST00000488848 LTBP1Q14766 1721 aa13.19□□□□□ -0.3
USP11-209ENST00000488848 TTC41PQ6P2S7 1318 aa13.19□□□□□ -0.3
USP11-209ENST00000488848 BMP2KLQ5H9B9 411 aa13.19□□□□□ -0.3
USP11-209ENST00000488848 C3orf67Q6ZVT6 689 aa13.19□□□□□ -0.3
USP11-209ENST00000488848 MROH5Q6ZUA9 1318 aa13.18□□□□□ -0.3
USP11-209ENST00000488848 MMP10P09238 476 aa13.18□□□□□ -0.3
USP11-209ENST00000488848 BICDL1Q6ZP65 573 aa13.18□□□□□ -0.3
USP11-209ENST00000488848 TICAM2Q86XR7 235 aa13.18□□□□□ -0.3
USP11-209ENST00000488848 CLASRPQ8N2M8 674 aaKnown RBP13.18□□□□□ -0.3
USP11-209ENST00000488848 KLHDC4Q8TBB5 520 aa13.18□□□□□ -0.3
USP11-209ENST00000488848 BSDC1Q9NW68 430 aaPredicted RBP13.18□□□□□ -0.3
USP11-209ENST00000488848 SPEF2Q9C093 1822 aa13.18□□□□□ -0.3
USP11-209ENST00000488848 MX1P20591 662 aa13.17□□□□□ -0.3
USP11-209ENST00000488848 GTF2E1P29083 439 aaPredicted RBP13.17□□□□□ -0.3
USP11-209ENST00000488848 PDE1AP54750 535 aa13.17□□□□□ -0.3
USP11-209ENST00000488848 IFFO2Q5TF58 517 aa13.17□□□□□ -0.3
USP11-209ENST00000488848 TMC4Q7Z404 712 aa13.17□□□□□ -0.3
USP11-209ENST00000488848 CRAMP1Q96RY5 1269 aa13.17□□□□□ -0.3
USP11-209ENST00000488848 ZBTB47Q9UFB7 747 aaPredicted RBP13.17□□□□□ -0.3
USP11-209ENST00000488848 KIAA1551Q9HCM1 1747 aa13.16□□□□□ -0.3
USP11-209ENST00000488848 LRRC24Q50LG9 513 aa13.16□□□□□ -0.3
USP11-209ENST00000488848 TNNI3KQ59H18 835 aa13.16□□□□□ -0.3
USP11-209ENST00000488848 LDHAL6AQ6ZMR3 332 aa13.16□□□□□ -0.3
USP11-209ENST00000488848 EAF2Q96CJ1 260 aaPredicted RBP13.16□□□□□ -0.3
USP11-209ENST00000488848 AKAP2Q9Y2D5 859 aa13.16□□□□□ -0.3
USP11-209ENST00000488848 CHMP3Q9Y3E7 222 aa13.16□□□□□ -0.3
USP11-209ENST00000488848 PARP3Q9Y6F1 533 aa13.16□□□□□ -0.3
USP11-209ENST00000488848 FPGT-TNNI3KV9GXZ4 949 aa13.16□□□□□ -0.3
USP11-209ENST00000488848 SMARCA5O60264 1052 aaPredicted RBP13.15□□□□□ -0.3
USP11-209ENST00000488848 FGFR2P21802 821 aa13.15□□□□□ -0.3
USP11-209ENST00000488848 PDE6BP35913 854 aa13.15□□□□□ -0.3
USP11-209ENST00000488848 IGHMBP2P38935 993 aaKnown RBP13.15□□□□□ -0.3
USP11-209ENST00000488848 OS9Q13438 667 aaPredicted RBP13.15□□□□□ -0.3
USP11-209ENST00000488848 GRAPQ13588 217 aa13.15□□□□□ -0.3
USP11-209ENST00000488848 GRAPLQ8TC17 118 aaPredicted RBP13.15□□□□□ -0.3
USP11-209ENST00000488848 PI4K2BQ8TCG2 481 aa13.15□□□□□ -0.3
USP11-209ENST00000488848 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.15□□□□□ -0.3
USP11-209ENST00000488848 ZNF594Q96JF6 807 aaPredicted RBP13.15□□□□□ -0.3
USP11-209ENST00000488848 ZNF512BQ96KM6 892 aaPredicted RBP13.15□□□□□ -0.3
USP11-209ENST00000488848 PUS3Q9BZE2 481 aaKnown RBP13.15□□□□□ -0.3
USP11-209ENST00000488848 MTFR1LQ9H019 292 aa13.15□□□□□ -0.3
USP11-209ENST00000488848 SIL1Q9H173 461 aa13.15□□□□□ -0.3
USP11-209ENST00000488848 SEC31BQ9NQW1 1179 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms