RNA–Protein interactions for RNA: ENST00000488683.1

CLIC4-202, Transcript of chloride intracellular channel 4, humanhuman

TSL 2

Gene CLIC4, Length 2,723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-202ENST00000488683 NEUROD6Q96NK8 337 aa15.15■□□□□ 0.02
CLIC4-202ENST00000488683 TTC12Q9H892 705 aaPredicted RBP15.15■□□□□ 0.02
CLIC4-202ENST00000488683 MRC1P22897 1456 aa15.15■□□□□ 0.02
CLIC4-202ENST00000488683 ZKSCAN1P17029 563 aaPredicted RBP15.15■□□□□ 0.02
CLIC4-202ENST00000488683 CEBPZQ03701 1054 aaKnown RBP15.15■□□□□ 0.02
CLIC4-202ENST00000488683 LARP1BQ659C4 914 aaKnown RBP15.15■□□□□ 0.02
CLIC4-202ENST00000488683 CHST3Q7LGC8 479 aa15.15■□□□□ 0.02
CLIC4-202ENST00000488683 TM6SF1Q9BZW5 370 aa15.15■□□□□ 0.02
CLIC4-202ENST00000488683 ZBTB3Q9H5J0 574 aa15.15■□□□□ 0.02
CLIC4-202ENST00000488683 RFX5P48382 616 aaPredicted RBP15.14■□□□□ 0.01
CLIC4-202ENST00000488683 TOB2Q14106 344 aaPredicted RBP15.14■□□□□ 0.01
CLIC4-202ENST00000488683 IFNL2Q8IZJ0 200 aa15.14■□□□□ 0.01
CLIC4-202ENST00000488683 NOL7Q9UMY1 257 aaKnown RBP15.14■□□□□ 0.01
CLIC4-202ENST00000488683 STRCP1A6NGW2 1772 aa15.14■□□□□ 0.01
CLIC4-202ENST00000488683 ARFGEF2Q9Y6D5 1785 aa15.14■□□□□ 0.01
CLIC4-202ENST00000488683 A1BGP04217 495 aa15.14■□□□□ 0.01
CLIC4-202ENST00000488683 HSP90AB3PQ58FF7 597 aa15.14■□□□□ 0.01
CLIC4-202ENST00000488683 LMBR1LQ6UX01 489 aa15.14■□□□□ 0.01
CLIC4-202ENST00000488683 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.14■□□□□ 0.012e-7■■■□□ 17.3
CLIC4-202ENST00000488683 MED23Q9ULK4 1368 aa15.13■□□□□ 0.01
CLIC4-202ENST00000488683 SNRKQ9NRH2 765 aa15.13■□□□□ 0.01
CLIC4-202ENST00000488683 GLI3P10071 1580 aa15.13■□□□□ 0.01
CLIC4-202ENST00000488683 LIG1P18858 919 aa15.13■□□□□ 0.01
CLIC4-202ENST00000488683 TNNI3KQ59H18 835 aa15.13■□□□□ 0.01
CLIC4-202ENST00000488683 TTC6Q86TZ1 520 aa15.13■□□□□ 0.01
CLIC4-202ENST00000488683 CKAP2LQ8IYA6 745 aa15.13■□□□□ 0.01
CLIC4-202ENST00000488683 FPGT-TNNI3KV9GXZ4 949 aa15.13■□□□□ 0.01
CLIC4-202ENST00000488683 TMEM94Q12767 1356 aa15.12■□□□□ 0.01
CLIC4-202ENST00000488683 SNRPA1P09661 255 aaKnown RBP15.12■□□□□ 0.01
CLIC4-202ENST00000488683 CABP4P57796 275 aa15.12■□□□□ 0.01
CLIC4-202ENST00000488683 BLOC1S2Q6QNY1 142 aa15.12■□□□□ 0.01
CLIC4-202ENST00000488683 TSC1Q92574 1164 aa15.12■□□□□ 0.01
CLIC4-202ENST00000488683 SYAP1Q96A49 352 aaPredicted RBP15.12■□□□□ 0.01
CLIC4-202ENST00000488683 NAP1L2Q9ULW6 460 aaPredicted RBP15.12■□□□□ 0.01
CLIC4-202ENST00000488683 A0A087WWV3 80 aa15.12■□□□□ 0.01
CLIC4-202ENST00000488683 FAM177BA6PVY3 158 aa15.12■□□□□ 0.01
CLIC4-202ENST00000488683 NBPF26B4DH59 902 aa15.12■□□□□ 0.01
CLIC4-202ENST00000488683 HSPA2P54652 639 aa15.12■□□□□ 0.01
CLIC4-202ENST00000488683 NBPF14Q5TI25 921 aa15.12■□□□□ 0.01
CLIC4-202ENST00000488683 NBPF10Q6P3W6 841 aaKnown RBP15.12■□□□□ 0.01
CLIC4-202ENST00000488683 NBPF15Q8N660 670 aa15.12■□□□□ 0.01
CLIC4-202ENST00000488683 SPC24Q8NBT2 197 aa15.12■□□□□ 0.01
CLIC4-202ENST00000488683 ZKSCAN5Q9Y2L8 839 aa15.12■□□□□ 0.01
CLIC4-202ENST00000488683 TAF5LO75529 589 aa15.11■□□□□ 0.01
CLIC4-202ENST00000488683 ADCY5O95622 1261 aa15.11■□□□□ 0.01
CLIC4-202ENST00000488683 CCDC183Q5T5S1 534 aa15.11■□□□□ 0.01
CLIC4-202ENST00000488683 FTOQ9C0B1 505 aaKnown RBP eCLIP15.11■□□□□ 0.01
CLIC4-202ENST00000488683 COPRSQ9NQ92 184 aa15.11■□□□□ 0.01
CLIC4-202ENST00000488683 OFD1O75665 1012 aa15.11■□□□□ 0.01
CLIC4-202ENST00000488683 ATF3P18847 181 aa15.11■□□□□ 0.01
CLIC4-202ENST00000488683 LRRC24Q50LG9 513 aa15.11■□□□□ 0.01
CLIC4-202ENST00000488683 HS1BP3Q53T59 392 aa15.11■□□□□ 0.01
CLIC4-202ENST00000488683 DCAF5Q96JK2 942 aa15.11■□□□□ 0.01
CLIC4-202ENST00000488683 SH2B1Q9NRF2 756 aaPredicted RBP15.11■□□□□ 0.01
CLIC4-202ENST00000488683 HIP1O00291 1037 aa15.1■□□□□ 0.01
CLIC4-202ENST00000488683 GOLIM4O00461 696 aa15.1■□□□□ 0.01
CLIC4-202ENST00000488683 UBE2HP62256 183 aa15.1■□□□□ 0.01
CLIC4-202ENST00000488683 ZSCAN31Q96LW9 406 aaPredicted RBP15.1■□□□□ 0.01
CLIC4-202ENST00000488683 PUS3Q9BZE2 481 aaKnown RBP15.1■□□□□ 0.01
CLIC4-202ENST00000488683 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.1■□□□□ 0.01
CLIC4-202ENST00000488683 PKD1L3Q7Z443 1732 aa15.1■□□□□ 0.01
CLIC4-202ENST00000488683 ZNF609O15014 1411 aa15.1■□□□□ 0.01
CLIC4-202ENST00000488683 HSP90B1P14625 803 aaKnown RBP15.1■□□□□ 0.01
CLIC4-202ENST00000488683 RAB11FIP4Q86YS3 637 aa15.1■□□□□ 0.01
CLIC4-202ENST00000488683 RPS6KB1P23443 525 aa15.09■□□□□ 0.01
CLIC4-202ENST00000488683 RABL6Q3YEC7 729 aaPredicted RBP15.09■□□□□ 0.01
CLIC4-202ENST00000488683 STOX1Q6ZVD7 989 aa15.09■□□□□ 0.01
CLIC4-202ENST00000488683 FMNL2Q96PY5 1086 aa15.09■□□□□ 0.01
CLIC4-202ENST00000488683 JCADQ9P266 1359 aa15.09■□□□□ 0.01
CLIC4-202ENST00000488683 CYP21A2P08686 494 aa15.09■□□□□ 0.01
CLIC4-202ENST00000488683 CASP7P55210 303 aa15.09■□□□□ 0.01
CLIC4-202ENST00000488683 Q6ZUG5 572 aa15.09■□□□□ 0.01
CLIC4-202ENST00000488683 KAT6BQ8WYB5 2073 aa15.09■□□□□ 0.01
CLIC4-202ENST00000488683 CCT2P78371 535 aaKnown RBP15.08■□□□□ 0.01
CLIC4-202ENST00000488683 GUCY1B3Q02153 619 aa15.08■□□□□ 0.01
CLIC4-202ENST00000488683 HSP90AA2PQ14568 343 aaPredicted RBP15.08■□□□□ 0.01
CLIC4-202ENST00000488683 SYNE4Q8N205 404 aa15.08■□□□□ 0.01
CLIC4-202ENST00000488683 NCOA5Q9HCD5 579 aaKnown RBP15.08■□□□□ 0
CLIC4-202ENST00000488683 GPHNQ9NQX3 736 aaPredicted RBP15.08■□□□□ 0
CLIC4-202ENST00000488683 STRN4Q9NRL3 753 aa15.08■□□□□ 0
CLIC4-202ENST00000488683 PHF14O94880 888 aa15.08■□□□□ 0
CLIC4-202ENST00000488683 ATP5JP18859 108 aa15.08■□□□□ 0
CLIC4-202ENST00000488683 TTLL5Q6EMB2 1281 aa15.08■□□□□ 0
CLIC4-202ENST00000488683 BRF1Q92994 677 aa15.08■□□□□ 0
CLIC4-202ENST00000488683 BCL11BQ9C0K0 894 aaPredicted RBP15.08■□□□□ 0
CLIC4-202ENST00000488683 FAM13BQ9NYF5 915 aa15.08■□□□□ 0
CLIC4-202ENST00000488683 TNS3Q68CZ2 1445 aa15.07■□□□□ 0
CLIC4-202ENST00000488683 KDM4AO75164 1064 aa15.07■□□□□ 0
CLIC4-202ENST00000488683 ERCC4Q92889 916 aaPredicted RBP15.07■□□□□ 0
CLIC4-202ENST00000488683 CCDC39Q9UFE4 941 aa15.07■□□□□ 0
CLIC4-202ENST00000488683 PSMA5P28066 241 aa15.07■□□□□ 0
CLIC4-202ENST00000488683 FBXW7Q969H0 707 aa15.07■□□□□ 0
CLIC4-202ENST00000488683 ATP6V1DQ9Y5K8 247 aa15.07■□□□□ 0
CLIC4-202ENST00000488683 LAMB4A4D0S4 1761 aa15.06■□□□□ 0
CLIC4-202ENST00000488683 PI16Q6UXB8 463 aa15.06■□□□□ 0
CLIC4-202ENST00000488683 LUZP1Q86V48 1076 aa15.06■□□□□ 0
CLIC4-202ENST00000488683 ABCC6O95255 1503 aa15.06■□□□□ 0
CLIC4-202ENST00000488683 ZNF500O60304 480 aaPredicted RBP15.06■□□□□ 0
CLIC4-202ENST00000488683 FGD1P98174 961 aa15.06■□□□□ 0
CLIC4-202ENST00000488683 FOXO4P98177 505 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms