RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 GNPATO15228 680 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 EIF5BO60841 1220 aaKnown RBP11.56□□□□□ -0.56
SF3B1-211ENST00000487698 IL15P40933 162 aaPredicted RBP11.56□□□□□ -0.56
SF3B1-211ENST00000487698 RBM25P49756 843 aaKnown RBP11.56□□□□□ -0.56
SF3B1-211ENST00000487698 CCDC57Q2TAC2 916 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 TNNI3KQ59H18 835 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 AMIGO3Q86WK7 504 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 DDRGK1Q96HY6 314 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 GPATCH3Q96I76 525 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 ZNF594Q96JF6 807 aaPredicted RBP11.56□□□□□ -0.56
SF3B1-211ENST00000487698 UTP14AQ9BVJ6 771 aaKnown RBP11.56□□□□□ -0.56
SF3B1-211ENST00000487698 NIP7Q9Y221 180 aaKnown RBP eCLIP11.56□□□□□ -0.56
SF3B1-211ENST00000487698 FPGT-TNNI3KV9GXZ4 949 aa11.56□□□□□ -0.56
SF3B1-211ENST00000487698 RGPD3A6NKT7 1758 aaPredicted RBP11.55□□□□□ -0.56
SF3B1-211ENST00000487698 RGPD4Q7Z3J3 1758 aa11.55□□□□□ -0.56
SF3B1-211ENST00000487698 ERC2O15083 957 aa11.55□□□□□ -0.56
SF3B1-211ENST00000487698 CASC1Q6TDU7 716 aa11.55□□□□□ -0.56
SF3B1-211ENST00000487698 GPR108Q9NPR9 543 aa11.55□□□□□ -0.56
SF3B1-211ENST00000487698 RIC1Q4ADV7 1423 aa11.55□□□□□ -0.56
SF3B1-211ENST00000487698 TRIM37O94972 964 aa11.54□□□□□ -0.56
SF3B1-211ENST00000487698 LRRC24Q50LG9 513 aa11.54□□□□□ -0.56
SF3B1-211ENST00000487698 SLC27A3Q5K4L6 730 aa11.54□□□□□ -0.56
SF3B1-211ENST00000487698 CCDC8Q9H0W5 538 aaPredicted RBP11.54□□□□□ -0.56
SF3B1-211ENST00000487698 GREM2Q9H772 168 aa11.54□□□□□ -0.56
SF3B1-211ENST00000487698 DBNLQ9UJU6 430 aaKnown RBP11.54□□□□□ -0.56
SF3B1-211ENST00000487698 RTCBQ9Y3I0 505 aaKnown RBP11.54□□□□□ -0.56
SF3B1-211ENST00000487698 ARAP2Q8WZ64 1704 aa11.54□□□□□ -0.56
SF3B1-211ENST00000487698 TRIM6-TRIM34B2RNG4 842 aa11.54□□□□□ -0.56
SF3B1-211ENST00000487698 CHMLP26374 656 aa11.54□□□□□ -0.56
SF3B1-211ENST00000487698 IFIT5Q13325 482 aaKnown RBP11.54□□□□□ -0.56
SF3B1-211ENST00000487698 SMIM5Q71RC9 77 aa11.54□□□□□ -0.56
SF3B1-211ENST00000487698 PUS3Q9BZE2 481 aaKnown RBP11.54□□□□□ -0.56
SF3B1-211ENST00000487698 RTL9Q8NET4 1388 aa11.53□□□□□ -0.56
SF3B1-211ENST00000487698 A0A1B0GUL6 1792 aa11.53□□□□□ -0.56
SF3B1-211ENST00000487698 ITGA6P23229 1130 aa11.53□□□□□ -0.56
SF3B1-211ENST00000487698 POTEDQ86YR6 584 aa11.53□□□□□ -0.56
SF3B1-211ENST00000487698 RILPL2Q969X0 211 aa11.53□□□□□ -0.56
SF3B1-211ENST00000487698 USPL1Q5W0Q7 1092 aa11.53□□□□□ -0.56
SF3B1-211ENST00000487698 CNTROBQ8N137 903 aa11.53□□□□□ -0.56
SF3B1-211ENST00000487698 CCDC85AQ96PX6 553 aaPredicted RBP11.53□□□□□ -0.56
SF3B1-211ENST00000487698 RGS17Q9UGC6 210 aaPredicted RBP11.53□□□□□ -0.56
SF3B1-211ENST00000487698 SRP68Q9UHB9 627 aaKnown RBP11.53□□□□□ -0.56
SF3B1-211ENST00000487698 ANKRD18BA2A2Z9 1011 aa11.52□□□□□ -0.57
SF3B1-211ENST00000487698 HCLS1P14317 486 aaPredicted RBP11.52□□□□□ -0.57
SF3B1-211ENST00000487698 RXRBP28702 533 aa11.52□□□□□ -0.57
SF3B1-211ENST00000487698 TBC1D9BQ66K14 1250 aa11.52□□□□□ -0.57
SF3B1-211ENST00000487698 FBXO41Q8TF61 875 aa11.52□□□□□ -0.57
SF3B1-211ENST00000487698 ARHGEF1Q92888 912 aaKnown RBP11.52□□□□□ -0.57
SF3B1-211ENST00000487698 ESYT1Q9BSJ8 1104 aa11.52□□□□□ -0.57
SF3B1-211ENST00000487698 COL4A1P02462 1669 aa11.52□□□□□ -0.57
SF3B1-211ENST00000487698 MAP4K4O95819 1239 aaPredicted RBP11.51□□□□□ -0.57
SF3B1-211ENST00000487698 HSP90B1P14625 803 aaKnown RBP11.51□□□□□ -0.57
SF3B1-211ENST00000487698 ADRA2BP18089 450 aa11.51□□□□□ -0.57
SF3B1-211ENST00000487698 DBNDD2Q9BQY9 259 aa11.51□□□□□ -0.57
SF3B1-211ENST00000487698 RIPOR2Q9Y4F9 1068 aa11.51□□□□□ -0.57
SF3B1-211ENST00000487698 FAM177BA6PVY3 158 aa11.51□□□□□ -0.57
SF3B1-211ENST00000487698 ZPR1O75312 459 aa11.51□□□□□ -0.57
SF3B1-211ENST00000487698 ATP5JP18859 108 aa11.51□□□□□ -0.57
SF3B1-211ENST00000487698 USP26Q9BXU7 913 aa11.51□□□□□ -0.57
SF3B1-211ENST00000487698 TAF1P21675 1872 aa11.51□□□□□ -0.57
SF3B1-211ENST00000487698 REC8O95072 547 aa11.5□□□□□ -0.57
SF3B1-211ENST00000487698 TAF7LQ5H9L4 462 aa11.5□□□□□ -0.57
SF3B1-211ENST00000487698 PROM2Q8N271 834 aa11.5□□□□□ -0.57
SF3B1-211ENST00000487698 EVI5LQ96CN4 794 aa11.5□□□□□ -0.57
SF3B1-211ENST00000487698 KIF2CQ99661 725 aa11.5□□□□□ -0.57
SF3B1-211ENST00000487698 CEP126Q9P2H0 1117 aa11.5□□□□□ -0.57
SF3B1-211ENST00000487698 TNRC6CQ9HCJ0 1690 aaKnown RBP11.5□□□□□ -0.57
SF3B1-211ENST00000487698 ABCC12Q96J65 1359 aa11.5□□□□□ -0.57
SF3B1-211ENST00000487698 TXNRD1Q16881 649 aa11.5□□□□□ -0.57
SF3B1-211ENST00000487698 ERFEQ4G0M1 354 aa11.5□□□□□ -0.57
SF3B1-211ENST00000487698 TRAPPC3LQ5T215 181 aa11.5□□□□□ -0.57
SF3B1-211ENST00000487698 VGLL2Q8N8G2 317 aa11.5□□□□□ -0.57
SF3B1-211ENST00000487698 AKAP11Q9UKA4 1901 aa11.49□□□□□ -0.57
SF3B1-211ENST00000487698 A0A1B0GUL7 405 aa11.49□□□□□ -0.57
SF3B1-211ENST00000487698 PLSCR1O15162 318 aa11.49□□□□□ -0.57
SF3B1-211ENST00000487698 CCDC152Q4G0S7 254 aa11.49□□□□□ -0.57
SF3B1-211ENST00000487698 SLC10A5Q5PT55 438 aa11.49□□□□□ -0.57
SF3B1-211ENST00000487698 LDHAL6AQ6ZMR3 332 aa11.49□□□□□ -0.57
SF3B1-211ENST00000487698 IL25Q9H293 177 aa11.49□□□□□ -0.57
SF3B1-211ENST00000487698 AKAP2Q9Y2D5 859 aa11.49□□□□□ -0.57
SF3B1-211ENST00000487698 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.48□□□□□ -0.57
SF3B1-211ENST00000487698 PHF14O94880 888 aa11.48□□□□□ -0.57
SF3B1-211ENST00000487698 SSFA2P28290 1259 aa11.48□□□□□ -0.57
SF3B1-211ENST00000487698 RFC4P35249 363 aa11.48□□□□□ -0.57
SF3B1-211ENST00000487698 TIMM10P62072 90 aa11.48□□□□□ -0.57
SF3B1-211ENST00000487698 POTEAQ6S8J7 498 aa11.48□□□□□ -0.57
SF3B1-211ENST00000487698 SETDB2Q96T68 719 aa11.48□□□□□ -0.57
SF3B1-211ENST00000487698 NYXQ9GZU5 481 aa11.48□□□□□ -0.57
SF3B1-211ENST00000487698 BOLA2Q9H3K6 86 aa11.48□□□□□ -0.57
SF3B1-211ENST00000487698 RFX7Q2KHR2 1363 aa11.48□□□□□ -0.57
SF3B1-211ENST00000487698 SGSM2O43147 1006 aa11.48□□□□□ -0.57
SF3B1-211ENST00000487698 EPB41L2O43491 1005 aaKnown RBP11.48□□□□□ -0.57
SF3B1-211ENST00000487698 SF3B3Q15393 1217 aaKnown RBP11.48□□□□□ -0.57
SF3B1-211ENST00000487698 BICDL1Q6ZP65 573 aa11.48□□□□□ -0.57
SF3B1-211ENST00000487698 HAUS7Q99871 368 aa11.48□□□□□ -0.57
SF3B1-211ENST00000487698 MYH7P12883 1935 aa11.48□□□□□ -0.57
SF3B1-211ENST00000487698 CARMIL3Q8ND23 1372 aa11.47□□□□□ -0.57
SF3B1-211ENST00000487698 HMGB2P26583 209 aaKnown RBP11.47□□□□□ -0.57
SF3B1-211ENST00000487698 METTL24Q5JXM2 366 aa11.47□□□□□ -0.57
SF3B1-211ENST00000487698 C3orf67Q6ZVT6 689 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 314 ms