RNA–Protein interactions for RNA: ENST00000486572.1

COL1A1-207, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 836 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-207ENST00000486572 SMC4Q9NTJ3 1288 aa23.14■■□□□ 1.29
COL1A1-207ENST00000486572 ZC3H4Q9UPT8 1303 aaKnown RBP23.13■■□□□ 1.29
COL1A1-207ENST00000486572 H7C1W4 665 aa23.13■■□□□ 1.29
COL1A1-207ENST00000486572 BBOX1O75936 387 aa23.13■■□□□ 1.29
COL1A1-207ENST00000486572 UBE3BQ7Z3V4 1068 aa23.13■■□□□ 1.29
COL1A1-207ENST00000486572 ATP6V0A2Q9Y487 856 aa23.13■■□□□ 1.29
COL1A1-207ENST00000486572 GRIPAP1Q4V328 841 aa23.12■■□□□ 1.29
COL1A1-207ENST00000486572 TMX4Q9H1E5 349 aaPredicted RBP23.12■■□□□ 1.29
COL1A1-207ENST00000486572 CCDC88AQ3V6T2 1871 aa23.11■■□□□ 1.29
COL1A1-207ENST00000486572 CCDC152Q4G0S7 254 aa23.11■■□□□ 1.29
COL1A1-207ENST00000486572 SLC4A10Q6U841 1118 aa23.11■■□□□ 1.29
COL1A1-207ENST00000486572 ZNF526Q8TF50 670 aaPredicted RBP23.11■■□□□ 1.29
COL1A1-207ENST00000486572 CTSWP56202 376 aa23.1■■□□□ 1.29
COL1A1-207ENST00000486572 TMC4Q7Z404 712 aa23.1■■□□□ 1.29
COL1A1-207ENST00000486572 SLC51AQ86UW1 340 aa23.1■■□□□ 1.29
COL1A1-207ENST00000486572 PSMD1Q99460 953 aa23.1■■□□□ 1.29
COL1A1-207ENST00000486572 GPBP1L1Q9HC44 474 aaPredicted RBP23.1■■□□□ 1.29
COL1A1-207ENST00000486572 TAF1P21675 1872 aa23.1■■□□□ 1.29
COL1A1-207ENST00000486572 DICER1Q9UPY3 1922 aaKnown RBP23.1■■□□□ 1.29
COL1A1-207ENST00000486572 LRRC37AA6NMS7 1700 aa23.09■■□□□ 1.29
COL1A1-207ENST00000486572 ALDH1L1O75891 902 aa23.09■■□□□ 1.29
COL1A1-207ENST00000486572 SP8Q8IXZ3 490 aa23.09■■□□□ 1.29
COL1A1-207ENST00000486572 CELF1Q92879 486 aaKnown RBP23.09■■□□□ 1.29
COL1A1-207ENST00000486572 SRCIN1Q9C0H9 1055 aa23.09■■□□□ 1.29
COL1A1-207ENST00000486572 MYH3P11055 1940 aa23.09■■□□□ 1.29
COL1A1-207ENST00000486572 COL4A1P02462 1669 aa23.09■■□□□ 1.29
COL1A1-207ENST00000486572 CASP7P55210 303 aa23.08■■□□□ 1.29
COL1A1-207ENST00000486572 ZNF277Q9NRM2 450 aaPredicted RBP23.08■■□□□ 1.29
COL1A1-207ENST00000486572 RARSP54136 660 aaKnown RBP23.07■■□□□ 1.28
COL1A1-207ENST00000486572 CCDC85AQ96PX6 553 aaPredicted RBP23.07■■□□□ 1.28
COL1A1-207ENST00000486572 PLA2G12BQ9BX93 195 aa23.07■■□□□ 1.28
COL1A1-207ENST00000486572 BRPF1P55201 1214 aaPredicted RBP23.06■■□□□ 1.28
COL1A1-207ENST00000486572 TTLL11Q8NHH1 800 aa23.06■■□□□ 1.28
COL1A1-207ENST00000486572 SEC31BQ9NQW1 1179 aa23.06■■□□□ 1.28
COL1A1-207ENST00000486572 RTL9Q8NET4 1388 aa23.05■■□□□ 1.28
COL1A1-207ENST00000486572 GRM8O00222 908 aa23.05■■□□□ 1.28
COL1A1-207ENST00000486572 IARSP41252 1262 aaKnown RBP23.05■■□□□ 1.28
COL1A1-207ENST00000486572 RPS8P62241 208 aaKnown RBP23.05■■□□□ 1.28
COL1A1-207ENST00000486572 KDM2BQ8NHM5 1336 aa23.05■■□□□ 1.28
COL1A1-207ENST00000486572 DPP8Q6V1X1 898 aaPredicted RBP23.04■■□□□ 1.28
COL1A1-207ENST00000486572 C9orf78Q9NZ63 289 aaPredicted RBP23.04■■□□□ 1.28
COL1A1-207ENST00000486572 KIF16BQ96L93 1317 aa23.04■■□□□ 1.28
COL1A1-207ENST00000486572 MPNDQ8N594 471 aa23.03■■□□□ 1.28
COL1A1-207ENST00000486572 GREM2Q9H772 168 aa23.03■■□□□ 1.28
COL1A1-207ENST00000486572 NOB1Q9ULX3 412 aaKnown RBP23.03■■□□□ 1.28
COL1A1-207ENST00000486572 SUPT20HQ8NEM7 779 aa23.02■■□□□ 1.28
COL1A1-207ENST00000486572 CDC5LQ99459 802 aaKnown RBP23.02■■□□□ 1.28
COL1A1-207ENST00000486572 RTFDC1Q9BY42 306 aaPredicted RBP23.02■■□□□ 1.28
COL1A1-207ENST00000486572 DUOX1Q9NRD9 1551 aa23.01■■□□□ 1.27
COL1A1-207ENST00000486572 GLTPD2A6NH11 291 aa23.01■■□□□ 1.27
COL1A1-207ENST00000486572 ANKRD18AQ8IVF6 992 aa23.01■■□□□ 1.27
COL1A1-207ENST00000486572 API5Q9BZZ5 524 aaKnown RBP23.01■■□□□ 1.27
COL1A1-207ENST00000486572 CSF1RP07333 972 aa23■■□□□ 1.27
COL1A1-207ENST00000486572 FAM161AQ3B820 660 aa22.99■■□□□ 1.27
COL1A1-207ENST00000486572 DPY19L2Q6NUT2 758 aa22.99■■□□□ 1.27
COL1A1-207ENST00000486572 LARGE2Q8N3Y3 721 aa22.99■■□□□ 1.27
COL1A1-207ENST00000486572 JDP2Q8WYK2 163 aa22.99■■□□□ 1.27
COL1A1-207ENST00000486572 VPS33BQ9H267 617 aa22.99■■□□□ 1.27
COL1A1-207ENST00000486572 NMRK2Q9NPI5 230 aa22.99■■□□□ 1.27
COL1A1-207ENST00000486572 UTYO14607 1347 aa22.99■■□□□ 1.27
COL1A1-207ENST00000486572 COL4A5P29400 1685 aa22.99■■□□□ 1.27
COL1A1-207ENST00000486572 LTBP1Q14766 1721 aa22.99■■□□□ 1.27
COL1A1-207ENST00000486572 PPIP5K2O43314 1243 aa22.98■■□□□ 1.27
COL1A1-207ENST00000486572 FOXO4P98177 505 aa22.98■■□□□ 1.27
COL1A1-207ENST00000486572 ARHGAP45Q92619 1136 aa22.98■■□□□ 1.27
COL1A1-207ENST00000486572 NSFL1CQ9UNZ2 370 aaKnown RBP22.98■■□□□ 1.27
COL1A1-207ENST00000486572 NBPF7P0C2Y1 421 aaPredicted RBP22.97■■□□□ 1.27
COL1A1-207ENST00000486572 ITGA6P23229 1130 aa22.97■■□□□ 1.27
COL1A1-207ENST00000486572 CCT4P50991 539 aaKnown RBP22.97■■□□□ 1.27
COL1A1-207ENST00000486572 GPSM2P81274 684 aa22.97■■□□□ 1.27
COL1A1-207ENST00000486572 AOC3Q16853 763 aa22.97■■□□□ 1.27
COL1A1-207ENST00000486572 SPEF2Q9C093 1822 aa22.96■■□□□ 1.27
COL1A1-207ENST00000486572 FZD9O00144 591 aa22.96■■□□□ 1.27
COL1A1-207ENST00000486572 KIF3CO14782 793 aa22.96■■□□□ 1.27
COL1A1-207ENST00000486572 BCAR3O75815 825 aa22.96■■□□□ 1.27
COL1A1-207ENST00000486572 IPO8O15397 1037 aaKnown RBP22.95■■□□□ 1.26
COL1A1-207ENST00000486572 IGHMBP2P38935 993 aaKnown RBP22.95■■□□□ 1.26
COL1A1-207ENST00000486572 KIAA2012Q0VF49 1180 aa22.95■■□□□ 1.26
COL1A1-207ENST00000486572 EPHA10Q5JZY3 1008 aa22.95■■□□□ 1.26
COL1A1-207ENST00000486572 LMBR1LQ6UX01 489 aa22.95■■□□□ 1.26
COL1A1-207ENST00000486572 NIM1KQ8IY84 436 aa22.95■■□□□ 1.26
COL1A1-207ENST00000486572 SUCLG2Q96I99 432 aa22.95■■□□□ 1.26
COL1A1-207ENST00000486572 WDR90Q96KV7 1748 aa22.95■■□□□ 1.26
COL1A1-207ENST00000486572 ZNF541Q9H0D2 1346 aa22.95■■□□□ 1.26
COL1A1-207ENST00000486572 BSDC1Q9NW68 430 aaPredicted RBP22.95■■□□□ 1.26
COL1A1-207ENST00000486572 PODXL2Q9NZ53 605 aa22.95■■□□□ 1.26
COL1A1-207ENST00000486572 CHMP3Q9Y3E7 222 aa22.95■■□□□ 1.26
COL1A1-207ENST00000486572 ANKRD18BA2A2Z9 1011 aa22.94■■□□□ 1.26
COL1A1-207ENST00000486572 ANKIB1Q9P2G1 1089 aa22.94■■□□□ 1.26
COL1A1-207ENST00000486572 C6orf229H3BNL8 230 aa22.93■■□□□ 1.26
COL1A1-207ENST00000486572 DDNO94850 711 aaPredicted RBP22.93■■□□□ 1.26
COL1A1-207ENST00000486572 IFIT5Q13325 482 aaKnown RBP22.93■■□□□ 1.26
COL1A1-207ENST00000486572 FRAT1Q92837 279 aaPredicted RBP22.93■■□□□ 1.26
COL1A1-207ENST00000486572 USP44Q9H0E7 712 aa22.93■■□□□ 1.26
COL1A1-207ENST00000486572 RRAGCQ9HB90 399 aa22.93■■□□□ 1.26
COL1A1-207ENST00000486572 POLLQ9UGP5 575 aa22.93■■□□□ 1.26
COL1A1-207ENST00000486572 XDHP47989 1333 aa22.92■■□□□ 1.26
COL1A1-207ENST00000486572 WASHC4Q2M389 1173 aa22.92■■□□□ 1.26
COL1A1-207ENST00000486572 TBC1D16Q8TBP0 767 aa22.92■■□□□ 1.26
COL1A1-207ENST00000486572 KAZALD1Q96I82 304 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms