RNA–Protein interactions for RNA: ENST00000486530.1

HPS3-206, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 5

Gene HPS3, Length 1,894 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-206ENST00000486530 RREB1Q92766 1687 aa24.56■■□□□ 1.52
HPS3-206ENST00000486530 LOC102724428A0A0B4J2F2 783 aa24.55■■□□□ 1.52
HPS3-206ENST00000486530 PTMSP20962 102 aa24.55■■□□□ 1.52
HPS3-206ENST00000486530 SIK1P57059 783 aa24.55■■□□□ 1.52
HPS3-206ENST00000486530 CUL4AQ13619 759 aa24.55■■□□□ 1.52
HPS3-206ENST00000486530 CLEC17AQ6ZS10 378 aa24.55■■□□□ 1.52
HPS3-206ENST00000486530 UPF3BQ9BZI7 483 aaKnown RBP24.55■■□□□ 1.52
HPS3-206ENST00000486530 FBXO3Q9UK99 471 aa24.55■■□□□ 1.52
HPS3-206ENST00000486530 IL6STP40189 918 aaPredicted RBP24.55■■□□□ 1.52
HPS3-206ENST00000486530 FAM227BQ96M60 508 aa24.55■■□□□ 1.52
HPS3-206ENST00000486530 ARXQ96QS3 562 aa24.55■■□□□ 1.52
HPS3-206ENST00000486530 SSFA2P28290 1259 aa24.54■■□□□ 1.52
HPS3-206ENST00000486530 ATP6V1AP38606 617 aa24.54■■□□□ 1.52
HPS3-206ENST00000486530 PTH1RQ03431 593 aa24.54■■□□□ 1.52
HPS3-206ENST00000486530 SMARCC1Q92922 1105 aaPredicted RBP24.54■■□□□ 1.52
HPS3-206ENST00000486530 KCNB2Q92953 911 aa24.54■■□□□ 1.52
HPS3-206ENST00000486530 MED23Q9ULK4 1368 aa24.54■■□□□ 1.52
HPS3-206ENST00000486530 THSD7AQ9UPZ6 1657 aa24.54■■□□□ 1.52
HPS3-206ENST00000486530 CCDC57Q2TAC2 916 aa24.53■■□□□ 1.52
HPS3-206ENST00000486530 INTS5Q6P9B9 1019 aaKnown RBP24.53■■□□□ 1.52
HPS3-206ENST00000486530 ZGPATQ8N5A5 531 aaKnown RBP24.53■■□□□ 1.52
HPS3-206ENST00000486530 HAUS7Q99871 368 aa24.53■■□□□ 1.52
HPS3-206ENST00000486530 PALLDQ8WX93 1383 aa24.53■■□□□ 1.52
HPS3-206ENST00000486530 SPEF2Q9C093 1822 aa24.53■■□□□ 1.52
HPS3-206ENST00000486530 ERVV-1B6SEH8 477 aa24.53■■□□□ 1.52
HPS3-206ENST00000486530 CYP2E1P05181 493 aaPredicted RBP24.53■■□□□ 1.52
HPS3-206ENST00000486530 ITPK1Q13572 414 aa24.53■■□□□ 1.52
HPS3-206ENST00000486530 HLFQ16534 295 aa24.53■■□□□ 1.52
HPS3-206ENST00000486530 RASEFQ8IZ41 740 aa24.53■■□□□ 1.52
HPS3-206ENST00000486530 INTS4Q96HW7 963 aaKnown RBP24.53■■□□□ 1.52
HPS3-206ENST00000486530 NLRP10Q86W26 655 aa24.52■■□□□ 1.52
HPS3-206ENST00000486530 FAM89AQ96GI7 184 aa24.52■■□□□ 1.52
HPS3-206ENST00000486530 A0A0D9SFI3 127 aa24.51■■□□□ 1.51
HPS3-206ENST00000486530 ONECUT3O60422 494 aaPredicted RBP24.51■■□□□ 1.51
HPS3-206ENST00000486530 CSF1RP07333 972 aa24.51■■□□□ 1.51
HPS3-206ENST00000486530 LRRC24Q50LG9 513 aa24.51■■□□□ 1.51
HPS3-206ENST00000486530 ZNF594Q96JF6 807 aaPredicted RBP24.51■■□□□ 1.51
HPS3-206ENST00000486530 TRAK2O60296 914 aa24.51■■□□□ 1.51
HPS3-206ENST00000486530 ATRNO75882 1429 aa24.51■■□□□ 1.51
HPS3-206ENST00000486530 NECTIN1Q15223 517 aa24.5■■□□□ 1.51
HPS3-206ENST00000486530 PRPF40BQ6NWY9 871 aaKnown RBP24.5■■□□□ 1.51
HPS3-206ENST00000486530 DZIP3Q86Y13 1208 aaKnown RBP24.5■■□□□ 1.51
HPS3-206ENST00000486530 MAP4K1Q92918 833 aa24.5■■□□□ 1.51
HPS3-206ENST00000486530 TTC14Q96N46 770 aa24.5■■□□□ 1.51
HPS3-206ENST00000486530 EIF5P55010 431 aaKnown RBP24.49■■□□□ 1.51
HPS3-206ENST00000486530 NEUROD6Q96NK8 337 aa24.49■■□□□ 1.51
HPS3-206ENST00000486530 TM6SF1Q9BZW5 370 aa24.49■■□□□ 1.51
HPS3-206ENST00000486530 CCDC87Q9NVE4 849 aa24.49■■□□□ 1.51
HPS3-206ENST00000486530 TRPC5Q9UL62 973 aaPredicted RBP24.49■■□□□ 1.51
HPS3-206ENST00000486530 RBM8AQ9Y5S9 174 aaKnown RBP24.49■■□□□ 1.51
HPS3-206ENST00000486530 ZKSCAN1P17029 563 aaPredicted RBP24.49■■□□□ 1.51
HPS3-206ENST00000486530 GPTP24298 496 aa24.49■■□□□ 1.51
HPS3-206ENST00000486530 CRKLP46109 303 aaKnown RBP24.49■■□□□ 1.51
HPS3-206ENST00000486530 PTF1AQ7RTS3 328 aa24.49■■□□□ 1.51
HPS3-206ENST00000486530 TICAM2Q86XR7 235 aa24.49■■□□□ 1.51
HPS3-206ENST00000486530 EDC3Q96F86 508 aaKnown RBP24.49■■□□□ 1.51
HPS3-206ENST00000486530 DNAJC2Q99543 621 aaKnown RBP24.49■■□□□ 1.51
HPS3-206ENST00000486530 GOLGA6L22H0YM25 854 aa24.48■■□□□ 1.51
HPS3-206ENST00000486530 CEP126Q9P2H0 1117 aa24.48■■□□□ 1.51
HPS3-206ENST00000486530 ZNF831Q5JPB2 1677 aa24.48■■□□□ 1.51
HPS3-206ENST00000486530 KCNJ4P48050 445 aa24.47■■□□□ 1.51
HPS3-206ENST00000486530 IFIT5Q13325 482 aaKnown RBP24.47■■□□□ 1.51
HPS3-206ENST00000486530 PUS3Q9BZE2 481 aaKnown RBP24.47■■□□□ 1.51
HPS3-206ENST00000486530 CASTP20810 708 aaKnown RBP24.47■■□□□ 1.51
HPS3-206ENST00000486530 TAF7LQ5H9L4 462 aa24.47■■□□□ 1.51
HPS3-206ENST00000486530 NOL8Q76FK4 1167 aaKnown RBP24.47■■□□□ 1.51
HPS3-206ENST00000486530 QTRT2Q9H974 415 aaKnown RBP24.47■■□□□ 1.51
HPS3-206ENST00000486530 AKAP2Q9Y2D5 859 aa24.47■■□□□ 1.51
HPS3-206ENST00000486530 A0A1B0GUL7 405 aa24.46■■□□□ 1.51
HPS3-206ENST00000486530 BAG4O95429 457 aaKnown RBP24.46■■□□□ 1.51
HPS3-206ENST00000486530 TIMM10P62072 90 aa24.46■■□□□ 1.51
HPS3-206ENST00000486530 CREB3L3Q68CJ9 461 aa24.46■■□□□ 1.51
HPS3-206ENST00000486530 KBTBD3Q8NAB2 608 aa24.46■■□□□ 1.51
HPS3-206ENST00000486530 FBXO41Q8TF61 875 aa24.46■■□□□ 1.51
HPS3-206ENST00000486530 TBC1D2BQ9UPU7 963 aa24.46■■□□□ 1.51
HPS3-206ENST00000486530 COL5A3P25940 1745 aaPredicted RBP24.46■■□□□ 1.51
HPS3-206ENST00000486530 RNF20Q5VTR2 975 aa24.45■■□□□ 1.51
HPS3-206ENST00000486530 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.45■■□□□ 1.51
HPS3-206ENST00000486530 CTSWP56202 376 aa24.45■■□□□ 1.5
HPS3-206ENST00000486530 SKOR2Q2VWA4 1001 aaPredicted RBP24.45■■□□□ 1.5
HPS3-206ENST00000486530 JAKMIP1Q96N16 626 aaKnown RBP24.45■■□□□ 1.5
HPS3-206ENST00000486530 AK2P54819 239 aa24.44■■□□□ 1.5
HPS3-206ENST00000486530 PKP1Q13835 747 aa24.44■■□□□ 1.5
HPS3-206ENST00000486530 FAM182BQ5T319 152 aa24.44■■□□□ 1.5
HPS3-206ENST00000486530 ZNF589Q86UQ0 364 aaPredicted RBP24.44■■□□□ 1.5
HPS3-206ENST00000486530 ZNF34Q8IZ26 560 aa24.44■■□□□ 1.5
HPS3-206ENST00000486530 ZSWIM6Q9HCJ5 1215 aa24.44■■□□□ 1.5
HPS3-206ENST00000486530 PAG1Q9NWQ8 432 aa24.44■■□□□ 1.5
HPS3-206ENST00000486530 TRMT112Q9UI30 125 aaKnown RBP24.44■■□□□ 1.5
HPS3-206ENST00000486530 MYH14Q7Z406 1995 aaKnown RBP24.44■■□□□ 1.5
HPS3-206ENST00000486530 RPAP1Q9BWH6 1393 aaPredicted RBP24.43■■□□□ 1.5
HPS3-206ENST00000486530 IRS4O14654 1257 aaPredicted RBP24.43■■□□□ 1.5
HPS3-206ENST00000486530 VPS53Q5VIR6 699 aa24.43■■□□□ 1.5
HPS3-206ENST00000486530 DDX46Q7L014 1031 aaKnown RBP24.43■■□□□ 1.5
HPS3-206ENST00000486530 HMG20BQ9P0W2 317 aa24.43■■□□□ 1.5
HPS3-206ENST00000486530 LIMCH1Q9UPQ0 1083 aa24.43■■□□□ 1.5
HPS3-206ENST00000486530 CYP46A1Q9Y6A2 500 aa24.43■■□□□ 1.5
HPS3-206ENST00000486530 NDUFB9Q9Y6M9 179 aa24.43■■□□□ 1.5
HPS3-206ENST00000486530 SH3TC1Q8TE82 1336 aa24.43■■□□□ 1.5
HPS3-206ENST00000486530 SLC27A2O14975 620 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms