RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 BBOX1O75936 387 aa22.93■■□□□ 1.26
HDAC6-225ENST00000483506 FKBP4Q02790 459 aaKnown RBP eCLIP22.93■■□□□ 1.26
HDAC6-225ENST00000483506 BEND3Q5T5X7 828 aa22.93■■□□□ 1.26
HDAC6-225ENST00000483506 PSMD1Q99460 953 aa22.93■■□□□ 1.26
HDAC6-225ENST00000483506 TAF1P21675 1872 aa22.92■■□□□ 1.26
HDAC6-225ENST00000483506 PTPRCP08575 1304 aa22.92■■□□□ 1.26
HDAC6-225ENST00000483506 PDE8AO60658 829 aa22.92■■□□□ 1.26
HDAC6-225ENST00000483506 ATP6V0A2Q9Y487 856 aa22.92■■□□□ 1.26
HDAC6-225ENST00000483506 ZBED9Q6R2W3 1325 aa22.91■■□□□ 1.26
HDAC6-225ENST00000483506 BRPF1P55201 1214 aaPredicted RBP22.91■■□□□ 1.26
HDAC6-225ENST00000483506 CASP7P55210 303 aa22.91■■□□□ 1.26
HDAC6-225ENST00000483506 TMC4Q7Z404 712 aa22.91■■□□□ 1.26
HDAC6-225ENST00000483506 COL4A1P02462 1669 aa22.9■■□□□ 1.26
HDAC6-225ENST00000483506 PLA2G12BQ9BX93 195 aa22.9■■□□□ 1.26
HDAC6-225ENST00000483506 SP8Q8IXZ3 490 aa22.89■■□□□ 1.25
HDAC6-225ENST00000483506 JARID2Q92833 1246 aaPredicted RBP22.89■■□□□ 1.25
HDAC6-225ENST00000483506 CCDC152Q4G0S7 254 aa22.88■■□□□ 1.25
HDAC6-225ENST00000483506 UBE3BQ7Z3V4 1068 aa22.88■■□□□ 1.25
HDAC6-225ENST00000483506 SLC51AQ86UW1 340 aa22.88■■□□□ 1.25
HDAC6-225ENST00000483506 GPBP1L1Q9HC44 474 aaPredicted RBP22.88■■□□□ 1.25
HDAC6-225ENST00000483506 RTL9Q8NET4 1388 aa22.88■■□□□ 1.25
HDAC6-225ENST00000483506 ALDH1L1O75891 902 aa22.87■■□□□ 1.25
HDAC6-225ENST00000483506 CTSWP56202 376 aa22.87■■□□□ 1.25
HDAC6-225ENST00000483506 CELF1Q92879 486 aaKnown RBP22.87■■□□□ 1.25
HDAC6-225ENST00000483506 SMC4Q9NTJ3 1288 aa22.87■■□□□ 1.25
HDAC6-225ENST00000483506 BCL2L13Q9BXK5 485 aa22.86■■□□□ 1.25
HDAC6-225ENST00000483506 RARSP54136 660 aaKnown RBP22.85■■□□□ 1.25
HDAC6-225ENST00000483506 TTLL11Q8NHH1 800 aa22.85■■□□□ 1.25
HDAC6-225ENST00000483506 RTFDC1Q9BY42 306 aaPredicted RBP22.85■■□□□ 1.25
HDAC6-225ENST00000483506 TMX4Q9H1E5 349 aaPredicted RBP22.85■■□□□ 1.25
HDAC6-225ENST00000483506 ZNF277Q9NRM2 450 aaPredicted RBP22.85■■□□□ 1.25
HDAC6-225ENST00000483506 LTBP1Q14766 1721 aa22.85■■□□□ 1.25
HDAC6-225ENST00000483506 IARSP41252 1262 aaKnown RBP22.84■■□□□ 1.25
HDAC6-225ENST00000483506 RPS8P62241 208 aaKnown RBP22.84■■□□□ 1.25
HDAC6-225ENST00000483506 SRCIN1Q9C0H9 1055 aa22.84■■□□□ 1.25
HDAC6-225ENST00000483506 SEC31BQ9NQW1 1179 aa22.84■■□□□ 1.25
HDAC6-225ENST00000483506 DUOX1Q9NRD9 1551 aa22.84■■□□□ 1.25
HDAC6-225ENST00000483506 ZNF526Q8TF50 670 aaPredicted RBP22.83■■□□□ 1.25
HDAC6-225ENST00000483506 VPS33BQ9H267 617 aa22.83■■□□□ 1.25
HDAC6-225ENST00000483506 KDM2BQ8NHM5 1336 aa22.82■■□□□ 1.24
HDAC6-225ENST00000483506 GLTPD2A6NH11 291 aa22.82■■□□□ 1.24
HDAC6-225ENST00000483506 GRM8O00222 908 aa22.82■■□□□ 1.24
HDAC6-225ENST00000483506 SLC4A10Q6U841 1118 aa22.82■■□□□ 1.24
HDAC6-225ENST00000483506 COL4A5P29400 1685 aa22.81■■□□□ 1.24
HDAC6-225ENST00000483506 CSF1RP07333 972 aa22.81■■□□□ 1.24
HDAC6-225ENST00000483506 MPNDQ8N594 471 aa22.81■■□□□ 1.24
HDAC6-225ENST00000483506 WDR90Q96KV7 1748 aa22.81■■□□□ 1.24
HDAC6-225ENST00000483506 UTYO14607 1347 aa22.81■■□□□ 1.24
HDAC6-225ENST00000483506 DPP8Q6V1X1 898 aaPredicted RBP22.8■■□□□ 1.24
HDAC6-225ENST00000483506 SUPT20HQ8NEM7 779 aa22.8■■□□□ 1.24
HDAC6-225ENST00000483506 GREM2Q9H772 168 aa22.8■■□□□ 1.24
HDAC6-225ENST00000483506 KIF3CO14782 793 aa22.79■■□□□ 1.24
HDAC6-225ENST00000483506 CCDC85AQ96PX6 553 aaPredicted RBP22.79■■□□□ 1.24
HDAC6-225ENST00000483506 CDC5LQ99459 802 aaKnown RBP22.79■■□□□ 1.24
HDAC6-225ENST00000483506 KIF16BQ96L93 1317 aa22.79■■□□□ 1.24
HDAC6-225ENST00000483506 FZD9O00144 591 aa22.78■■□□□ 1.24
HDAC6-225ENST00000483506 FOXO4P98177 505 aa22.78■■□□□ 1.24
HDAC6-225ENST00000483506 ARHGAP45Q92619 1136 aa22.78■■□□□ 1.24
HDAC6-225ENST00000483506 NMRK2Q9NPI5 230 aa22.78■■□□□ 1.24
HDAC6-225ENST00000483506 C9orf78Q9NZ63 289 aaPredicted RBP22.78■■□□□ 1.24
HDAC6-225ENST00000483506 NOB1Q9ULX3 412 aaKnown RBP22.78■■□□□ 1.24
HDAC6-225ENST00000483506 DPY19L2Q6NUT2 758 aa22.77■■□□□ 1.24
HDAC6-225ENST00000483506 ANKRD18AQ8IVF6 992 aa22.77■■□□□ 1.24
HDAC6-225ENST00000483506 API5Q9BZZ5 524 aaKnown RBP22.77■■□□□ 1.24
HDAC6-225ENST00000483506 PODXL2Q9NZ53 605 aa22.77■■□□□ 1.24
HDAC6-225ENST00000483506 JDP2Q8WYK2 163 aa22.76■■□□□ 1.23
HDAC6-225ENST00000483506 BSDC1Q9NW68 430 aaPredicted RBP22.76■■□□□ 1.23
HDAC6-225ENST00000483506 SPEF2Q9C093 1822 aa22.75■■□□□ 1.23
HDAC6-225ENST00000483506 GPSM2P81274 684 aa22.75■■□□□ 1.23
HDAC6-225ENST00000483506 KIAA2012Q0VF49 1180 aa22.75■■□□□ 1.23
HDAC6-225ENST00000483506 FAM161AQ3B820 660 aa22.75■■□□□ 1.23
HDAC6-225ENST00000483506 LARGE2Q8N3Y3 721 aa22.75■■□□□ 1.23
HDAC6-225ENST00000483506 PPIP5K2O43314 1243 aa22.74■■□□□ 1.23
HDAC6-225ENST00000483506 NBPF7P0C2Y1 421 aaPredicted RBP22.74■■□□□ 1.23
HDAC6-225ENST00000483506 ITGA6P23229 1130 aa22.74■■□□□ 1.23
HDAC6-225ENST00000483506 EPHA10Q5JZY3 1008 aa22.74■■□□□ 1.23
HDAC6-225ENST00000483506 NSFL1CQ9UNZ2 370 aaKnown RBP22.74■■□□□ 1.23
HDAC6-225ENST00000483506 ZNF541Q9H0D2 1346 aa22.74■■□□□ 1.23
HDAC6-225ENST00000483506 CCT4P50991 539 aaKnown RBP22.73■■□□□ 1.23
HDAC6-225ENST00000483506 AOC3Q16853 763 aa22.73■■□□□ 1.23
HDAC6-225ENST00000483506 KAZALD1Q96I82 304 aa22.73■■□□□ 1.23
HDAC6-225ENST00000483506 L3MBTL3Q96JM7 780 aaPredicted RBP22.73■■□□□ 1.23
HDAC6-225ENST00000483506 USP44Q9H0E7 712 aa22.73■■□□□ 1.23
HDAC6-225ENST00000483506 POLLQ9UGP5 575 aa22.73■■□□□ 1.23
HDAC6-225ENST00000483506 NIM1KQ8IY84 436 aa22.72■■□□□ 1.23
HDAC6-225ENST00000483506 SUCLG2Q96I99 432 aa22.72■■□□□ 1.23
HDAC6-225ENST00000483506 POTECB2RU33 542 aa22.71■■□□□ 1.23
HDAC6-225ENST00000483506 BCAR3O75815 825 aa22.71■■□□□ 1.23
HDAC6-225ENST00000483506 DDNO94850 711 aaPredicted RBP22.71■■□□□ 1.23
HDAC6-225ENST00000483506 IGHMBP2P38935 993 aaKnown RBP22.71■■□□□ 1.23
HDAC6-225ENST00000483506 C1QTNF8P60827 252 aa22.71■■□□□ 1.23
HDAC6-225ENST00000483506 LMBR1LQ6UX01 489 aa22.71■■□□□ 1.23
HDAC6-225ENST00000483506 TBC1D16Q8TBP0 767 aa22.71■■□□□ 1.23
HDAC6-225ENST00000483506 RRAGCQ9HB90 399 aa22.71■■□□□ 1.23
HDAC6-225ENST00000483506 XDHP47989 1333 aa22.71■■□□□ 1.23
HDAC6-225ENST00000483506 SCN4AP35499 1836 aa22.71■■□□□ 1.23
HDAC6-225ENST00000483506 ANKRD18BA2A2Z9 1011 aa22.7■■□□□ 1.22
HDAC6-225ENST00000483506 VEGFAP15692 232 aaPredicted RBP22.7■■□□□ 1.22
HDAC6-225ENST00000483506 RABL6Q3YEC7 729 aaPredicted RBP22.7■■□□□ 1.22
HDAC6-225ENST00000483506 MINPP1Q9UNW1 487 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 146.8 ms