RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 HSPA1AP0DMV8 641 aaKnown RBP19.74■□□□□ 0.75
LIMS3-203ENST00000480744 HSPA1BP0DMV9 641 aaKnown RBP19.74■□□□□ 0.75
LIMS3-203ENST00000480744 GOLGA2Q08379 1002 aa19.74■□□□□ 0.75
LIMS3-203ENST00000480744 RIC3Q7Z5B4 369 aa19.74■□□□□ 0.75
LIMS3-203ENST00000480744 LRRC37AA6NMS7 1700 aa19.73■□□□□ 0.75
LIMS3-203ENST00000480744 EPS15P42566 896 aa19.73■□□□□ 0.75
LIMS3-203ENST00000480744 SCNN1DP51172 638 aa19.73■□□□□ 0.75
LIMS3-203ENST00000480744 CNTROBQ8N137 903 aa19.73■□□□□ 0.75
LIMS3-203ENST00000480744 PHAXQ9H814 394 aaKnown RBP19.73■□□□□ 0.75
LIMS3-203ENST00000480744 PCNTO95613 3336 aa19.73■□□□□ 0.75
LIMS3-203ENST00000480744 TMEM88BA6NKF7 163 aa19.72■□□□□ 0.75
LIMS3-203ENST00000480744 COL13A1Q5TAT6 717 aaPredicted RBP19.72■□□□□ 0.75
LIMS3-203ENST00000480744 RTFDC1Q9BY42 306 aaPredicted RBP19.72■□□□□ 0.75
LIMS3-203ENST00000480744 VPS33BQ9H267 617 aa19.72■□□□□ 0.75
LIMS3-203ENST00000480744 ZNRF3Q9ULT6 936 aa19.72■□□□□ 0.75
LIMS3-203ENST00000480744 CCDC184Q52MB2 194 aa19.71■□□□□ 0.75
LIMS3-203ENST00000480744 C8orf58Q8NAV2 365 aa19.71■□□□□ 0.75
LIMS3-203ENST00000480744 CNTNAP1P78357 1384 aa19.7■□□□□ 0.74
LIMS3-203ENST00000480744 IRS4O14654 1257 aaPredicted RBP19.7■□□□□ 0.74
LIMS3-203ENST00000480744 CXCL9Q07325 125 aa19.7■□□□□ 0.74
LIMS3-203ENST00000480744 TMC4Q7Z404 712 aa19.7■□□□□ 0.74
LIMS3-203ENST00000480744 MYD88Q99836 296 aa19.7■□□□□ 0.74
LIMS3-203ENST00000480744 DUOX1Q9NRD9 1551 aa19.7■□□□□ 0.74
LIMS3-203ENST00000480744 TRPM7Q96QT4 1865 aa19.69■□□□□ 0.74
LIMS3-203ENST00000480744 KIAA2012Q0VF49 1180 aa19.69■□□□□ 0.74
LIMS3-203ENST00000480744 SF3B3Q15393 1217 aaKnown RBP19.69■□□□□ 0.74
LIMS3-203ENST00000480744 CELF1Q92879 486 aaKnown RBP19.69■□□□□ 0.74
LIMS3-203ENST00000480744 COL4A1P02462 1669 aa19.68■□□□□ 0.74
LIMS3-203ENST00000480744 RAD17O75943 681 aa19.68■□□□□ 0.74
LIMS3-203ENST00000480744 TRIM28Q13263 835 aaKnown RBP19.68■□□□□ 0.74
LIMS3-203ENST00000480744 CIAPIN1Q6FI81 312 aa19.68■□□□□ 0.74
LIMS3-203ENST00000480744 USP50Q70EL3 339 aaPredicted RBP19.68■□□□□ 0.74
LIMS3-203ENST00000480744 GMPSP49915 693 aaPredicted RBP19.67■□□□□ 0.74
LIMS3-203ENST00000480744 CCDC30Q5VVM6 783 aa19.67■□□□□ 0.74
LIMS3-203ENST00000480744 TSR2Q969E8 191 aaKnown RBP19.67■□□□□ 0.74
LIMS3-203ENST00000480744 BCL2L13Q9BXK5 485 aa19.67■□□□□ 0.74
LIMS3-203ENST00000480744 GPRC5DQ9NZD1 345 aa19.67■□□□□ 0.74
LIMS3-203ENST00000480744 NSFL1CQ9UNZ2 370 aaKnown RBP19.67■□□□□ 0.74
LIMS3-203ENST00000480744 DDX58O95786 925 aaKnown RBP19.66■□□□□ 0.74
LIMS3-203ENST00000480744 TSPYL6Q8N831 410 aa19.66■□□□□ 0.74
LIMS3-203ENST00000480744 ZBTB38Q8NAP3 1195 aaPredicted RBP19.66■□□□□ 0.74
LIMS3-203ENST00000480744 ADARB2Q9NS39 739 aaKnown RBP19.66■□□□□ 0.74
LIMS3-203ENST00000480744 ABT1Q9ULW3 272 aaKnown RBP19.66■□□□□ 0.74
LIMS3-203ENST00000480744 C6orf229H3BNL8 230 aa19.65■□□□□ 0.74
LIMS3-203ENST00000480744 VEGFBP49765 207 aa19.65■□□□□ 0.74
LIMS3-203ENST00000480744 TNIP1Q15025 636 aa19.65■□□□□ 0.74
LIMS3-203ENST00000480744 JARID2Q92833 1246 aaPredicted RBP19.65■□□□□ 0.74
LIMS3-203ENST00000480744 CHMP4AQ9BY43 222 aa19.65■□□□□ 0.74
LIMS3-203ENST00000480744 RIMBP2O15034 1052 aa19.64■□□□□ 0.73
LIMS3-203ENST00000480744 HSP90B1P14625 803 aaKnown RBP19.64■□□□□ 0.73
LIMS3-203ENST00000480744 GPSM2P81274 684 aa19.64■□□□□ 0.73
LIMS3-203ENST00000480744 FMR1Q06787 632 aaKnown RBP eCLIP19.64■□□□□ 0.73
LIMS3-203ENST00000480744 WASHC4Q2M389 1173 aa19.64■□□□□ 0.73
LIMS3-203ENST00000480744 TNS4Q8IZW8 715 aa19.64■□□□□ 0.73
LIMS3-203ENST00000480744 CWC25Q9NXE8 425 aaPredicted RBP19.64■□□□□ 0.73
LIMS3-203ENST00000480744 MYH3P11055 1940 aa19.63■□□□□ 0.73
LIMS3-203ENST00000480744 YDJCA8MPS7 323 aa19.63■□□□□ 0.73
LIMS3-203ENST00000480744 RPS8P62241 208 aaKnown RBP19.63■□□□□ 0.73
LIMS3-203ENST00000480744 DEFB115Q30KQ5 88 aa19.63■□□□□ 0.73
LIMS3-203ENST00000480744 CCDC191Q8NCU4 936 aa19.63■□□□□ 0.73
LIMS3-203ENST00000480744 CCDC85AQ96PX6 553 aaPredicted RBP19.63■□□□□ 0.73
LIMS3-203ENST00000480744 METTL22Q9BUU2 404 aaPredicted RBP19.63■□□□□ 0.73
LIMS3-203ENST00000480744 DBNDD1Q9H9R9 158 aa19.63■□□□□ 0.73
LIMS3-203ENST00000480744 MRS2Q9HD23 443 aa19.63■□□□□ 0.73
LIMS3-203ENST00000480744 MAP3K2Q9Y2U5 619 aa19.63■□□□□ 0.73
LIMS3-203ENST00000480744 SPEF2Q9C093 1822 aa19.62■□□□□ 0.73
LIMS3-203ENST00000480744 TRAF5O00463 557 aa19.62■□□□□ 0.73
LIMS3-203ENST00000480744 PCCAP05165 728 aaPredicted RBP19.62■□□□□ 0.73
LIMS3-203ENST00000480744 WWC1Q8IX03 1113 aa19.62■□□□□ 0.73
LIMS3-203ENST00000480744 STK31Q9BXU1 1019 aa19.62■□□□□ 0.73
LIMS3-203ENST00000480744 SEC31BQ9NQW1 1179 aa19.62■□□□□ 0.73
LIMS3-203ENST00000480744 CDHR2Q9BYE9 1310 aa19.61■□□□□ 0.73
LIMS3-203ENST00000480744 RASSF10A6NK89 507 aa19.61■□□□□ 0.73
LIMS3-203ENST00000480744 CCDC27Q2M243 656 aa19.61■□□□□ 0.73
LIMS3-203ENST00000480744 CCDC152Q4G0S7 254 aa19.61■□□□□ 0.73
LIMS3-203ENST00000480744 PAXIP1Q6ZW49 1069 aaPredicted RBP19.61■□□□□ 0.73
LIMS3-203ENST00000480744 GPR101Q96P66 508 aaPredicted RBP19.61■□□□□ 0.73
LIMS3-203ENST00000480744 EYA3Q99504 573 aa19.61■□□□□ 0.73
LIMS3-203ENST00000480744 POLLQ9UGP5 575 aa19.61■□□□□ 0.73
LIMS3-203ENST00000480744 ANP32CO43423 234 aa19.6■□□□□ 0.73
LIMS3-203ENST00000480744 PDE8AO60658 829 aa19.6■□□□□ 0.73
LIMS3-203ENST00000480744 CAPN15O75808 1086 aa19.6■□□□□ 0.73
LIMS3-203ENST00000480744 DOK7Q18PE1 504 aa19.6■□□□□ 0.73
LIMS3-203ENST00000480744 AIDAQ96BJ3 306 aa19.6■□□□□ 0.73
LIMS3-203ENST00000480744 SHTN1A0MZ66 631 aa19.59■□□□□ 0.73
LIMS3-203ENST00000480744 PI4KAP2A4QPH2 592 aa19.59■□□□□ 0.73
LIMS3-203ENST00000480744 FOXN1O15353 648 aa19.59■□□□□ 0.73
LIMS3-203ENST00000480744 TWISTNBQ3B726 338 aaPredicted RBP19.59■□□□□ 0.73
LIMS3-203ENST00000480744 KSR2Q6VAB6 950 aa19.59■□□□□ 0.73
LIMS3-203ENST00000480744 PI4KAP1Q8N8J0 262 aa19.59■□□□□ 0.73
LIMS3-203ENST00000480744 TBC1D16Q8TBP0 767 aa19.59■□□□□ 0.73
LIMS3-203ENST00000480744 ANKIB1Q9P2G1 1089 aa19.59■□□□□ 0.73
LIMS3-203ENST00000480744 CNOT7Q9UIV1 285 aaKnown RBP19.59■□□□□ 0.73
LIMS3-203ENST00000480744 ZBTB12Q9Y330 459 aaPredicted RBP19.59■□□□□ 0.73
LIMS3-203ENST00000480744 SALL2Q9Y467 1007 aaPredicted RBP19.59■□□□□ 0.73
LIMS3-203ENST00000480744 CACNA1FO60840 1977 aa19.58■□□□□ 0.73
LIMS3-203ENST00000480744 SCN9AQ15858 1988 aa19.58■□□□□ 0.73
LIMS3-203ENST00000480744 H7C1D1 291 aa19.58■□□□□ 0.72
LIMS3-203ENST00000480744 PSMD14O00487 310 aa19.58■□□□□ 0.72
LIMS3-203ENST00000480744 ECE2O60344 883 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms