RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 NPHP1O15259 732 aa21.79■■□□□ 1.08
UPF3A-206ENST00000480362 RAB11FIP3O75154 756 aa21.79■■□□□ 1.08
UPF3A-206ENST00000480362 PTPN12Q05209 780 aaKnown RBP21.79■■□□□ 1.08
UPF3A-206ENST00000480362 DDR1Q08345 913 aa21.79■■□□□ 1.08
UPF3A-206ENST00000480362 CCDC57Q2TAC2 916 aa21.79■■□□□ 1.08
UPF3A-206ENST00000480362 FAM161AQ3B820 660 aa21.79■■□□□ 1.08
UPF3A-206ENST00000480362 HSP90AB4PQ58FF6 505 aa21.79■■□□□ 1.08
UPF3A-206ENST00000480362 CCDC24Q8N4L8 307 aa21.79■■□□□ 1.08
UPF3A-206ENST00000480362 ABCC12Q96J65 1359 aa21.78■■□□□ 1.08
UPF3A-206ENST00000480362 POLRMTO00411 1230 aaKnown RBP21.78■■□□□ 1.08
UPF3A-206ENST00000480362 G3BP1Q13283 466 aaKnown RBP eCLIP21.78■■□□□ 1.08
UPF3A-206ENST00000480362 IFIT5Q13325 482 aaKnown RBP21.78■■□□□ 1.08
UPF3A-206ENST00000480362 MSL1Q68DK7 614 aa21.78■■□□□ 1.08
UPF3A-206ENST00000480362 CNBD1Q8NA66 436 aa21.78■■□□□ 1.08
UPF3A-206ENST00000480362 LNPKQ9C0E8 428 aa21.78■■□□□ 1.08
UPF3A-206ENST00000480362 GREM2Q9H772 168 aa21.78■■□□□ 1.08
UPF3A-206ENST00000480362 ZBTB47Q9UFB7 747 aaPredicted RBP21.78■■□□□ 1.08
UPF3A-206ENST00000480362 MYH3P11055 1940 aa21.78■■□□□ 1.08
UPF3A-206ENST00000480362 LAMB2P55268 1798 aa21.77■■□□□ 1.08
UPF3A-206ENST00000480362 SMARCA5O60264 1052 aaPredicted RBP21.77■■□□□ 1.08
UPF3A-206ENST00000480362 OS9Q13438 667 aaPredicted RBP21.77■■□□□ 1.08
UPF3A-206ENST00000480362 PRR5LQ6MZQ0 368 aa21.77■■□□□ 1.08
UPF3A-206ENST00000480362 ITGA6P23229 1130 aa21.76■■□□□ 1.07
UPF3A-206ENST00000480362 CCDC152Q4G0S7 254 aa21.76■■□□□ 1.07
UPF3A-206ENST00000480362 ZNF594Q96JF6 807 aaPredicted RBP21.76■■□□□ 1.07
UPF3A-206ENST00000480362 NLRP3Q96P20 1036 aa21.76■■□□□ 1.07
UPF3A-206ENST00000480362 LRRCC1Q9C099 1032 aa21.76■■□□□ 1.07
UPF3A-206ENST00000480362 PDGFDQ9GZP0 370 aaPredicted RBP21.76■■□□□ 1.07
UPF3A-206ENST00000480362 SIL1Q9H173 461 aa21.76■■□□□ 1.07
UPF3A-206ENST00000480362 ANKRD18BA2A2Z9 1011 aa21.75■■□□□ 1.07
UPF3A-206ENST00000480362 MMP10P09238 476 aa21.75■■□□□ 1.07
UPF3A-206ENST00000480362 SF3B3Q15393 1217 aaKnown RBP21.75■■□□□ 1.07
UPF3A-206ENST00000480362 C3orf67Q6ZVT6 689 aa21.75■■□□□ 1.07
UPF3A-206ENST00000480362 RHPN1Q8TCX5 695 aa21.75■■□□□ 1.07
UPF3A-206ENST00000480362 PDE4AP27815 886 aa21.74■■□□□ 1.07
UPF3A-206ENST00000480362 RGS3P49796 1198 aa21.74■■□□□ 1.07
UPF3A-206ENST00000480362 ST5P78524 1137 aa21.74■■□□□ 1.07
UPF3A-206ENST00000480362 TAF7LQ5H9L4 462 aa21.74■■□□□ 1.07
UPF3A-206ENST00000480362 ERC1Q8IUD2 1116 aa21.74■■□□□ 1.07
UPF3A-206ENST00000480362 KIF1BPQ96EK5 621 aa21.74■■□□□ 1.07
UPF3A-206ENST00000480362 BCL11AQ9H165 835 aa21.74■■□□□ 1.07
UPF3A-206ENST00000480362 PARP3Q9Y6F1 533 aa21.74■■□□□ 1.07
UPF3A-206ENST00000480362 SASH1O94885 1247 aa21.72■■□□□ 1.07
UPF3A-206ENST00000480362 SLC16A10Q8TF71 515 aa21.72■■□□□ 1.07
UPF3A-206ENST00000480362 SEC31BQ9NQW1 1179 aa21.72■■□□□ 1.07
UPF3A-206ENST00000480362 RTL9Q8NET4 1388 aa21.72■■□□□ 1.07
UPF3A-206ENST00000480362 EYA2O00167 538 aa21.71■■□□□ 1.07
UPF3A-206ENST00000480362 C16orf71Q8IYS4 520 aaPredicted RBP21.71■■□□□ 1.07
UPF3A-206ENST00000480362 PUS3Q9BZE2 481 aaKnown RBP21.71■■□□□ 1.07
UPF3A-206ENST00000480362 IL1RAPL2Q9NP60 686 aa21.71■■□□□ 1.07
UPF3A-206ENST00000480362 CIAO1O76071 339 aa21.7■■□□□ 1.06
UPF3A-206ENST00000480362 LRRC24Q50LG9 513 aa21.7■■□□□ 1.06
UPF3A-206ENST00000480362 ATG9AQ7Z3C6 839 aa21.7■■□□□ 1.06
UPF3A-206ENST00000480362 FBXO3Q9UK99 471 aa21.7■■□□□ 1.06
UPF3A-206ENST00000480362 RIC1Q4ADV7 1423 aa21.7■■□□□ 1.06
UPF3A-206ENST00000480362 IL15P40933 162 aaPredicted RBP21.69■■□□□ 1.06
UPF3A-206ENST00000480362 LDHAL6AQ6ZMR3 332 aa21.69■■□□□ 1.06
UPF3A-206ENST00000480362 NRXN2Q9P2S2 1712 aa21.69■■□□□ 1.06
UPF3A-206ENST00000480362 R3HDM1Q15032 1099 aaKnown RBP21.68■■□□□ 1.06
UPF3A-206ENST00000480362 TNRC6CQ9HCJ0 1690 aaKnown RBP21.68■■□□□ 1.06
UPF3A-206ENST00000480362 CASZ1Q86V15 1759 aa21.68■■□□□ 1.06
UPF3A-206ENST00000480362 TFCP2Q12800 502 aa21.67■■□□□ 1.06
UPF3A-206ENST00000480362 CLASRPQ8N2M8 674 aaKnown RBP21.67■■□□□ 1.06
UPF3A-206ENST00000480362 CDC5LQ99459 802 aaKnown RBP21.67■■□□□ 1.06
UPF3A-206ENST00000480362 CNNM1Q9NRU3 951 aa21.67■■□□□ 1.06
UPF3A-206ENST00000480362 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.67■■□□□ 1.06
UPF3A-206ENST00000480362 IGHMBP2P38935 993 aaKnown RBP21.66■■□□□ 1.06
UPF3A-206ENST00000480362 OTUD7AQ8TE49 926 aaPredicted RBP21.66■■□□□ 1.06
UPF3A-206ENST00000480362 RIPOR2Q9Y4F9 1068 aa21.66■■□□□ 1.06
UPF3A-206ENST00000480362 DDX46Q7L014 1031 aaKnown RBP21.65■■□□□ 1.06
UPF3A-206ENST00000480362 ANKRD18AQ8IVF6 992 aa21.65■■□□□ 1.06
UPF3A-206ENST00000480362 PLEKHM2Q8IWE5 1019 aa21.65■■□□□ 1.06
UPF3A-206ENST00000480362 PELP1Q8IZL8 1130 aaKnown RBP21.65■■□□□ 1.06
UPF3A-206ENST00000480362 MPHOSPH8Q99549 860 aa21.65■■□□□ 1.06
UPF3A-206ENST00000480362 BRIP1Q9BX63 1249 aa21.65■■□□□ 1.06
UPF3A-206ENST00000480362 KLRG2A4D1S0 409 aaPredicted RBP21.64■■□□□ 1.05
UPF3A-206ENST00000480362 CRY2Q49AN0 593 aa21.64■■□□□ 1.05
UPF3A-206ENST00000480362 CELF1Q92879 486 aaKnown RBP21.64■■□□□ 1.05
UPF3A-206ENST00000480362 CEP126Q9P2H0 1117 aa21.64■■□□□ 1.05
UPF3A-206ENST00000480362 ZBTB7AO95365 584 aa21.63■■□□□ 1.05
UPF3A-206ENST00000480362 RPGRQ92834 1020 aaKnown RBP21.63■■□□□ 1.05
UPF3A-206ENST00000480362 EAF2Q96CJ1 260 aaPredicted RBP21.63■■□□□ 1.05
UPF3A-206ENST00000480362 RPS8P62241 208 aaKnown RBP21.62■■□□□ 1.05
UPF3A-206ENST00000480362 TNNI3KQ59H18 835 aa21.62■■□□□ 1.05
UPF3A-206ENST00000480362 METTL24Q5JXM2 366 aa21.62■■□□□ 1.05
UPF3A-206ENST00000480362 AACSQ86V21 672 aa21.62■■□□□ 1.05
UPF3A-206ENST00000480362 FPGT-TNNI3KV9GXZ4 949 aa21.62■■□□□ 1.05
UPF3A-206ENST00000480362 COL4A1P02462 1669 aa21.62■■□□□ 1.05
UPF3A-206ENST00000480362 SALL3Q9BXA9 1300 aa21.61■■□□□ 1.05
UPF3A-206ENST00000480362 TAF1P21675 1872 aa21.61■■□□□ 1.05
UPF3A-206ENST00000480362 ANKRD31Q8N7Z5 1873 aa21.61■■□□□ 1.05
UPF3A-206ENST00000480362 PSDA5PKW4 1024 aaPredicted RBP21.61■■□□□ 1.05
UPF3A-206ENST00000480362 IFIT2P09913 472 aaKnown RBP21.61■■□□□ 1.05
UPF3A-206ENST00000480362 PDE6BP35913 854 aa21.61■■□□□ 1.05
UPF3A-206ENST00000480362 RBM17Q96I25 401 aaKnown RBP21.61■■□□□ 1.05
UPF3A-206ENST00000480362 CCDC8Q9H0W5 538 aaPredicted RBP21.61■■□□□ 1.05
UPF3A-206ENST00000480362 GPR108Q9NPR9 543 aa21.61■■□□□ 1.05
UPF3A-206ENST00000480362 LRP5O75197 1615 aa21.61■■□□□ 1.05
UPF3A-206ENST00000480362 MROH5Q6ZUA9 1318 aa21.6■■□□□ 1.05
UPF3A-206ENST00000480362 PDE1AP54750 535 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms