RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 DPEP1P16444 411 aa10.35□□□□□ -0.75
USP54-212ENST00000480210 MVPQ14764 893 aaKnown RBP10.35□□□□□ -0.75
USP54-212ENST00000480210 CC2D2BQ6DHV5 1058 aa10.35□□□□□ -0.75
USP54-212ENST00000480210 ITPRIPQ8IWB1 547 aa10.35□□□□□ -0.75
USP54-212ENST00000480210 TTLL6Q8N841 843 aa10.35□□□□□ -0.75
USP54-212ENST00000480210 RTL9Q8NET4 1388 aa10.35□□□□□ -0.75
USP54-212ENST00000480210 ABCC12Q96J65 1359 aa10.35□□□□□ -0.75
USP54-212ENST00000480210 ZBTB7BO15156 539 aaPredicted RBP10.34□□□□□ -0.75
USP54-212ENST00000480210 GNAI2P04899 355 aa10.34□□□□□ -0.75
USP54-212ENST00000480210 NBPF7P0C2Y1 421 aaPredicted RBP10.34□□□□□ -0.75
USP54-212ENST00000480210 KCNA3P22001 575 aa10.34□□□□□ -0.75
USP54-212ENST00000480210 CTSWP56202 376 aa10.34□□□□□ -0.75
USP54-212ENST00000480210 RABL6Q3YEC7 729 aaPredicted RBP10.34□□□□□ -0.75
USP54-212ENST00000480210 DALRD3Q5D0E6 543 aaKnown RBP10.34□□□□□ -0.75
USP54-212ENST00000480210 TTLL11Q8NHH1 800 aa10.34□□□□□ -0.75
USP54-212ENST00000480210 ZNF622Q969S3 477 aaKnown RBP eCLIP10.34□□□□□ -0.75
USP54-212ENST00000480210 CDC5LQ99459 802 aaKnown RBP10.34□□□□□ -0.75
USP54-212ENST00000480210 CACNA1SQ13698 1873 aa10.34□□□□□ -0.75
USP54-212ENST00000480210 A0A0G2JLW4 131 aa10.33□□□□□ -0.76
USP54-212ENST00000480210 ANKRD18BA2A2Z9 1011 aa10.33□□□□□ -0.76
USP54-212ENST00000480210 GRIN3BO60391 1043 aa10.33□□□□□ -0.76
USP54-212ENST00000480210 FOXO4P98177 505 aa10.33□□□□□ -0.76
USP54-212ENST00000480210 GRAPQ13588 217 aa10.33□□□□□ -0.76
USP54-212ENST00000480210 RTL5Q5HYW3 569 aaPredicted RBP10.33□□□□□ -0.76
USP54-212ENST00000480210 SYNE4Q8N205 404 aa10.33□□□□□ -0.76
USP54-212ENST00000480210 CCDC24Q8N4L8 307 aa10.33□□□□□ -0.76
USP54-212ENST00000480210 GRAPLQ8TC17 118 aaPredicted RBP10.33□□□□□ -0.76
USP54-212ENST00000480210 FBXO3Q9UK99 471 aa10.33□□□□□ -0.76
USP54-212ENST00000480210 SLX4Q8IY92 1834 aa10.33□□□□□ -0.76
USP54-212ENST00000480210 TNRC6CQ9HCJ0 1690 aaKnown RBP10.32□□□□□ -0.76
USP54-212ENST00000480210 PLIN1O60240 522 aa10.32□□□□□ -0.76
USP54-212ENST00000480210 RLBP1P12271 317 aa10.32□□□□□ -0.76
USP54-212ENST00000480210 CHRNA5P30532 468 aa10.32□□□□□ -0.76
USP54-212ENST00000480210 RPS8P62241 208 aaKnown RBP10.32□□□□□ -0.76
USP54-212ENST00000480210 IFIT5Q13325 482 aaKnown RBP10.32□□□□□ -0.76
USP54-212ENST00000480210 CCDC57Q2TAC2 916 aa10.32□□□□□ -0.76
USP54-212ENST00000480210 ANKRD18AQ8IVF6 992 aa10.32□□□□□ -0.76
USP54-212ENST00000480210 PANK1Q8TE04 598 aa10.32□□□□□ -0.76
USP54-212ENST00000480210 SUCLG2Q96I99 432 aa10.32□□□□□ -0.76
USP54-212ENST00000480210 SUPT16HQ9Y5B9 1047 aaKnown RBP10.32□□□□□ -0.76
USP54-212ENST00000480210 COL11A2P13942 1736 aaPredicted RBP10.32□□□□□ -0.76
USP54-212ENST00000480210 IGHMBP2P38935 993 aaKnown RBP10.31□□□□□ -0.76
USP54-212ENST00000480210 MTX1Q13505 466 aa10.31□□□□□ -0.76
USP54-212ENST00000480210 LMBR1LQ6UX01 489 aa10.31□□□□□ -0.76
USP54-212ENST00000480210 RPAP2Q8IXW5 612 aaPredicted RBP10.31□□□□□ -0.76
USP54-212ENST00000480210 SP8Q8IXZ3 490 aa10.31□□□□□ -0.76
USP54-212ENST00000480210 RTKN2Q8IZC4 609 aa10.31□□□□□ -0.76
USP54-212ENST00000480210 NLGN2Q8NFZ4 835 aa10.31□□□□□ -0.76
USP54-212ENST00000480210 JARID2Q92833 1246 aaPredicted RBP10.31□□□□□ -0.76
USP54-212ENST00000480210 MEIS3Q99687 375 aa10.31□□□□□ -0.76
USP54-212ENST00000480210 COG6Q9Y2V7 657 aa10.31□□□□□ -0.76
USP54-212ENST00000480210 TAF1P21675 1872 aa10.31□□□□□ -0.76
USP54-212ENST00000480210 ITGA6P23229 1130 aa10.3□□□□□ -0.76
USP54-212ENST00000480210 ATP8B2P98198 1209 aa10.3□□□□□ -0.76
USP54-212ENST00000480210 GPR162Q16538 588 aa10.3□□□□□ -0.76
USP54-212ENST00000480210 TAF7LQ5H9L4 462 aa10.3□□□□□ -0.76
USP54-212ENST00000480210 KAZALD1Q96I82 304 aa10.3□□□□□ -0.76
USP54-212ENST00000480210 MPHOSPH8Q99549 860 aa10.3□□□□□ -0.76
USP54-212ENST00000480210 VPS33BQ9H267 617 aa10.3□□□□□ -0.76
USP54-212ENST00000480210 BICC1Q9H694 974 aaKnown RBP10.3□□□□□ -0.76
USP54-212ENST00000480210 ZBTB40Q9NUA8 1239 aa10.3□□□□□ -0.76
USP54-212ENST00000480210 BSDC1Q9NW68 430 aaPredicted RBP10.3□□□□□ -0.76
USP54-212ENST00000480210 TNNQ9UQP3 1299 aa10.3□□□□□ -0.76
USP54-212ENST00000480210 BCS1LQ9Y276 419 aa10.3□□□□□ -0.76
USP54-212ENST00000480210 CHD4Q14839 1912 aa10.3□□□□□ -0.76
USP54-212ENST00000480210 FER1L6Q2WGJ9 1857 aa10.3□□□□□ -0.76
USP54-212ENST00000480210 CCDC88AQ3V6T2 1871 aa10.3□□□□□ -0.76
USP54-212ENST00000480210 PPEF1O14829 653 aaPredicted RBP10.29□□□□□ -0.76
USP54-212ENST00000480210 HMMRO75330 724 aa10.29□□□□□ -0.76
USP54-212ENST00000480210 CCDC93Q567U6 631 aa10.29□□□□□ -0.76
USP54-212ENST00000480210 PRPF40BQ6NWY9 871 aaKnown RBP10.29□□□□□ -0.76
USP54-212ENST00000480210 C3orf67Q6ZVT6 689 aa10.29□□□□□ -0.76
USP54-212ENST00000480210 SUPT20HQ8NEM7 779 aa10.29□□□□□ -0.76
USP54-212ENST00000480210 C7orf43Q8WVR3 580 aa10.29□□□□□ -0.76
USP54-212ENST00000480210 GREM2Q9H772 168 aa10.29□□□□□ -0.76
USP54-212ENST00000480210 CHMP3Q9Y3E7 222 aa10.29□□□□□ -0.76
USP54-212ENST00000480210 ATP6V0A2Q9Y487 856 aa10.29□□□□□ -0.76
USP54-212ENST00000480210 LRRFIP2Q9Y608 721 aaKnown RBP10.29□□□□□ -0.76
USP54-212ENST00000480210 EPHA10Q5JZY3 1008 aa10.28□□□□□ -0.76
USP54-212ENST00000480210 ANKRD44Q8N8A2 993 aa10.28□□□□□ -0.76
USP54-212ENST00000480210 ANKRD2Q9GZV1 360 aa10.28□□□□□ -0.76
USP54-212ENST00000480210 DICER1Q9UPY3 1922 aaKnown RBP10.28□□□□□ -0.76
USP54-212ENST00000480210 SBF1O95248 1867 aa10.27□□□□□ -0.76
USP54-212ENST00000480210 FAM161AQ3B820 660 aa10.27□□□□□ -0.77
USP54-212ENST00000480210 HSP90AB4PQ58FF6 505 aa10.27□□□□□ -0.77
USP54-212ENST00000480210 C20orf194Q5TEA3 1177 aa10.27□□□□□ -0.77
USP54-212ENST00000480210 LDHAL6AQ6ZMR3 332 aa10.27□□□□□ -0.77
USP54-212ENST00000480210 CELF1Q92879 486 aaKnown RBP10.27□□□□□ -0.77
USP54-212ENST00000480210 PSMD1Q99460 953 aa10.27□□□□□ -0.77
USP54-212ENST00000480210 COPRSQ9NQ92 184 aa10.27□□□□□ -0.77
USP54-212ENST00000480210 SEC31BQ9NQW1 1179 aa10.27□□□□□ -0.77
USP54-212ENST00000480210 PODXL2Q9NZ53 605 aa10.27□□□□□ -0.77
USP54-212ENST00000480210 SPEF2Q9C093 1822 aa10.27□□□□□ -0.77
USP54-212ENST00000480210 LTBP3Q9NS15 1303 aa10.27□□□□□ -0.77
USP54-212ENST00000480210 LRRC37AA6NMS7 1700 aa10.27□□□□□ -0.77
USP54-212ENST00000480210 SRGAP3O43295 1099 aa10.26□□□□□ -0.77
USP54-212ENST00000480210 C21orf2O43822 256 aa10.26□□□□□ -0.77
USP54-212ENST00000480210 CIAO1O76071 339 aa10.26□□□□□ -0.77
USP54-212ENST00000480210 ATP2B4P23634 1241 aa10.26□□□□□ -0.77
USP54-212ENST00000480210 MPNDQ8N594 471 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms