RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 TRIM35Q9UPQ4 493 aa17.25■□□□□ 0.35
VCL-205ENST00000478896 CTCFP49711 727 aaPredicted RBP17.24■□□□□ 0.35
VCL-205ENST00000478896 PLBD2Q8NHP8 589 aa17.24■□□□□ 0.35
VCL-205ENST00000478896 RTFDC1Q9BY42 306 aaPredicted RBP17.24■□□□□ 0.35
VCL-205ENST00000478896 ADARB2Q9NS39 739 aaKnown RBP17.24■□□□□ 0.35
VCL-205ENST00000478896 GPRC5DQ9NZD1 345 aa17.24■□□□□ 0.35
VCL-205ENST00000478896 HOXB7P09629 217 aa17.23■□□□□ 0.35
VCL-205ENST00000478896 CXCL9Q07325 125 aa17.23■□□□□ 0.35
VCL-205ENST00000478896 CIAPIN1Q6FI81 312 aa17.23■□□□□ 0.35
VCL-205ENST00000478896 BCL2L13Q9BXK5 485 aa17.23■□□□□ 0.35
VCL-205ENST00000478896 DBF4Q9UBU7 674 aaPredicted RBP17.23■□□□□ 0.35
VCL-205ENST00000478896 LRRC37AA6NMS7 1700 aa17.23■□□□□ 0.35
VCL-205ENST00000478896 WDR33Q9C0J8 1336 aaKnown RBP17.22■□□□□ 0.35
VCL-205ENST00000478896 FMR1Q06787 632 aaKnown RBP eCLIP17.22■□□□□ 0.354e-8■■■□□ 19.1
VCL-205ENST00000478896 KIAA2012Q0VF49 1180 aa17.22■□□□□ 0.35
VCL-205ENST00000478896 GRM1Q13255 1194 aa17.22■□□□□ 0.35
VCL-205ENST00000478896 ANKRD13DQ6ZTN6 518 aa17.22■□□□□ 0.35
VCL-205ENST00000478896 TMC4Q7Z404 712 aa17.22■□□□□ 0.35
VCL-205ENST00000478896 PRDM10Q9NQV6 1147 aa17.22■□□□□ 0.35
VCL-205ENST00000478896 ADAMTS8Q9UP79 889 aa17.22■□□□□ 0.35
VCL-205ENST00000478896 DUOX1Q9NRD9 1551 aa17.21■□□□□ 0.35
VCL-205ENST00000478896 ATP5J2-PTCD1G3V325 749 aa17.21■□□□□ 0.35
VCL-205ENST00000478896 TRAF5O00463 557 aa17.21■□□□□ 0.35
VCL-205ENST00000478896 RAD17O75943 681 aa17.21■□□□□ 0.35
VCL-205ENST00000478896 GMPSP49915 693 aaPredicted RBP17.21■□□□□ 0.35
VCL-205ENST00000478896 MAP2K1Q02750 393 aaPredicted RBP17.21■□□□□ 0.35
VCL-205ENST00000478896 FAM89AQ96GI7 184 aa17.21■□□□□ 0.35
VCL-205ENST00000478896 CFAP44Q96MT7 982 aa17.21■□□□□ 0.35
VCL-205ENST00000478896 WBP1LQ9NX94 342 aa17.21■□□□□ 0.35
VCL-205ENST00000478896 CDHR2Q9BYE9 1310 aa17.21■□□□□ 0.34
VCL-205ENST00000478896 ECE1P42892 770 aa17.2■□□□□ 0.34
VCL-205ENST00000478896 LBX1P52954 281 aa17.2■□□□□ 0.34
VCL-205ENST00000478896 TNIP1Q15025 636 aa17.2■□□□□ 0.34
VCL-205ENST00000478896 RTL5Q5HYW3 569 aaPredicted RBP17.2■□□□□ 0.34
VCL-205ENST00000478896 DUSP27Q5VZP5 1158 aa17.2■□□□□ 0.34
VCL-205ENST00000478896 HYPKQ9NX55 129 aa17.2■□□□□ 0.34
VCL-205ENST00000478896 THSD7BQ9C0I4 1608 aa17.19■□□□□ 0.34
VCL-205ENST00000478896 ISCA1Q9BUE6 129 aa17.19■□□□□ 0.34
VCL-205ENST00000478896 MBIPQ9NS73 344 aa17.19■□□□□ 0.34
VCL-205ENST00000478896 GOLGA2Q08379 1002 aa17.18■□□□□ 0.34
VCL-205ENST00000478896 CYP4F22Q6NT55 531 aa17.18■□□□□ 0.34
VCL-205ENST00000478896 RIC3Q7Z5B4 369 aa17.18■□□□□ 0.34
VCL-205ENST00000478896 CELF1Q92879 486 aaKnown RBP17.18■□□□□ 0.34
VCL-205ENST00000478896 CAPNS2Q96L46 248 aa17.18■□□□□ 0.34
VCL-205ENST00000478896 BEGAINQ9BUH8 593 aa17.18■□□□□ 0.34
VCL-205ENST00000478896 NSFL1CQ9UNZ2 370 aaKnown RBP17.18■□□□□ 0.34
VCL-205ENST00000478896 CELF2O95319 508 aaKnown RBP17.17■□□□□ 0.34
VCL-205ENST00000478896 WASHC4Q2M389 1173 aa17.17■□□□□ 0.34
VCL-205ENST00000478896 ZNF408Q9H9D4 720 aa17.17■□□□□ 0.34
VCL-205ENST00000478896 TLL2Q9Y6L7 1015 aa17.17■□□□□ 0.34
VCL-205ENST00000478896 YDJCA8MPS7 323 aa17.16■□□□□ 0.34
VCL-205ENST00000478896 C6orf229H3BNL8 230 aa17.16■□□□□ 0.34
VCL-205ENST00000478896 IRS4O14654 1257 aaPredicted RBP17.16■□□□□ 0.34
VCL-205ENST00000478896 HSPA8P11142 646 aaKnown RBP17.16■□□□□ 0.34
VCL-205ENST00000478896 CALD1Q05682 793 aaKnown RBP17.16■□□□□ 0.34
VCL-205ENST00000478896 SF3B3Q15393 1217 aaKnown RBP17.16■□□□□ 0.34
VCL-205ENST00000478896 CST9Q5W186 159 aa17.16■□□□□ 0.34
VCL-205ENST00000478896 GLIS2Q9BZE0 524 aaPredicted RBP17.16■□□□□ 0.34
VCL-205ENST00000478896 PRKRIP1Q9H875 184 aaPredicted RBP17.16■□□□□ 0.34
VCL-205ENST00000478896 DBNDD1Q9H9R9 158 aa17.16■□□□□ 0.34
VCL-205ENST00000478896 H7C1D1 291 aa17.15■□□□□ 0.34
VCL-205ENST00000478896 RIMBP2O15034 1052 aa17.15■□□□□ 0.34
VCL-205ENST00000478896 MICALL2Q8IY33 904 aa17.15■□□□□ 0.34
VCL-205ENST00000478896 TRPM4Q8TD43 1214 aa17.15■□□□□ 0.34
VCL-205ENST00000478896 GPR101Q96P66 508 aaPredicted RBP17.15■□□□□ 0.34
VCL-205ENST00000478896 EYA3Q99504 573 aa17.15■□□□□ 0.34
VCL-205ENST00000478896 IFT57Q9NWB7 429 aa17.15■□□□□ 0.34
VCL-205ENST00000478896 CNOT7Q9UIV1 285 aaKnown RBP17.15■□□□□ 0.34
VCL-205ENST00000478896 COL4A1P02462 1669 aa17.14■□□□□ 0.33
VCL-205ENST00000478896 ELL2O00472 640 aaPredicted RBP17.14■□□□□ 0.33
VCL-205ENST00000478896 APAF1O14727 1248 aa17.14■□□□□ 0.33
VCL-205ENST00000478896 GNAI1P63096 354 aa17.14■□□□□ 0.33
VCL-205ENST00000478896 ZC3H15Q8WU90 426 aaKnown RBP17.14■□□□□ 0.33
VCL-205ENST00000478896 ZBTB12Q9Y330 459 aaPredicted RBP17.14■□□□□ 0.33
VCL-205ENST00000478896 SHTN1A0MZ66 631 aa17.13■□□□□ 0.33
VCL-205ENST00000478896 PSMD14O00487 310 aa17.13■□□□□ 0.33
VCL-205ENST00000478896 HSP90B1P14625 803 aaKnown RBP17.13■□□□□ 0.33
VCL-205ENST00000478896 GPSM2P81274 684 aa17.13■□□□□ 0.33
VCL-205ENST00000478896 CDC37L1Q7L3B6 337 aa17.13■□□□□ 0.33
VCL-205ENST00000478896 ZBTB38Q8NAP3 1195 aaPredicted RBP17.13■□□□□ 0.33
VCL-205ENST00000478896 MYD88Q99836 296 aa17.13■□□□□ 0.33
VCL-205ENST00000478896 PHAXQ9H814 394 aaKnown RBP17.13■□□□□ 0.33
VCL-205ENST00000478896 ECE2O60344 883 aa17.12■□□□□ 0.33
VCL-205ENST00000478896 ZNF853P0CG23 659 aa17.12■□□□□ 0.33
VCL-205ENST00000478896 HIRAP54198 1017 aaPredicted RBP17.12■□□□□ 0.33
VCL-205ENST00000478896 TRIM28Q13263 835 aaKnown RBP17.12■□□□□ 0.33
VCL-205ENST00000478896 SAPCD2Q86UD0 394 aa17.12■□□□□ 0.33
VCL-205ENST00000478896 POLLQ9UGP5 575 aa17.12■□□□□ 0.33
VCL-205ENST00000478896 G3V3G9 751 aa17.11■□□□□ 0.33
VCL-205ENST00000478896 RPS8P62241 208 aaKnown RBP17.11■□□□□ 0.33
VCL-205ENST00000478896 DOK7Q18PE1 504 aa17.11■□□□□ 0.33
VCL-205ENST00000478896 DCAF8Q5TAQ9 597 aa17.11■□□□□ 0.33
VCL-205ENST00000478896 PGAP2Q9UHJ9 254 aa17.11■□□□□ 0.33
VCL-205ENST00000478896 AOC2O75106 756 aa17.1■□□□□ 0.33
VCL-205ENST00000478896 DDX58O95786 925 aaKnown RBP17.1■□□□□ 0.33
VCL-205ENST00000478896 CCDC152Q4G0S7 254 aa17.1■□□□□ 0.33
VCL-205ENST00000478896 TBC1D10BQ4KMP7 808 aaPredicted RBP17.1■□□□□ 0.33
VCL-205ENST00000478896 SAMD7Q7Z3H4 446 aa17.1■□□□□ 0.33
VCL-205ENST00000478896 TBC1D16Q8TBP0 767 aa17.1■□□□□ 0.33
VCL-205ENST00000478896 DPF2Q92785 391 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms