RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 GRAPQ13588 217 aa12.31□□□□□ -0.44
HDAC3-208ENST00000476739 C9orf131Q5VYM1 1079 aa12.31□□□□□ -0.44
HDAC3-208ENST00000476739 DDX46Q7L014 1031 aaKnown RBP12.31□□□□□ -0.44
HDAC3-208ENST00000476739 GRAPLQ8TC17 118 aaPredicted RBP12.31□□□□□ -0.44
HDAC3-208ENST00000476739 SRCIN1Q9C0H9 1055 aa12.31□□□□□ -0.44
HDAC3-208ENST00000476739 TNNQ9UQP3 1299 aa12.31□□□□□ -0.44
HDAC3-208ENST00000476739 CCDC93Q567U6 631 aa12.3□□□□□ -0.44
HDAC3-208ENST00000476739 EPHA10Q5JZY3 1008 aa12.3□□□□□ -0.44
HDAC3-208ENST00000476739 ZNF784Q8NCA9 323 aaPredicted RBP12.3□□□□□ -0.44
HDAC3-208ENST00000476739 TTLL11Q8NHH1 800 aa12.3□□□□□ -0.44
HDAC3-208ENST00000476739 RNF181Q9P0P0 153 aa12.3□□□□□ -0.44
HDAC3-208ENST00000476739 MYH3P11055 1940 aa12.3□□□□□ -0.44
HDAC3-208ENST00000476739 ALDH1L1O75891 902 aa12.29□□□□□ -0.44
HDAC3-208ENST00000476739 NBPF7P0C2Y1 421 aaPredicted RBP12.29□□□□□ -0.44
HDAC3-208ENST00000476739 CTSWP56202 376 aa12.29□□□□□ -0.44
HDAC3-208ENST00000476739 SOGA3Q5TF21 947 aa12.29□□□□□ -0.44
HDAC3-208ENST00000476739 PLA2G12BQ9BX93 195 aa12.29□□□□□ -0.44
HDAC3-208ENST00000476739 TAOK3Q9H2K8 898 aa12.29□□□□□ -0.44
HDAC3-208ENST00000476739 ATP6V0A2Q9Y487 856 aa12.29□□□□□ -0.44
HDAC3-208ENST00000476739 GRM8O00222 908 aa12.28□□□□□ -0.44
HDAC3-208ENST00000476739 BBOX1O75936 387 aa12.28□□□□□ -0.44
HDAC3-208ENST00000476739 LMNB1P20700 586 aa12.28□□□□□ -0.44
HDAC3-208ENST00000476739 FOXO4P98177 505 aa12.28□□□□□ -0.44
HDAC3-208ENST00000476739 CCDC152Q4G0S7 254 aa12.28□□□□□ -0.44
HDAC3-208ENST00000476739 SP8Q8IXZ3 490 aa12.28□□□□□ -0.44
HDAC3-208ENST00000476739 KAZALD1Q96I82 304 aa12.28□□□□□ -0.44
HDAC3-208ENST00000476739 YTHDC1Q96MU7 727 aaKnown RBP12.28□□□□□ -0.44
HDAC3-208ENST00000476739 GREM2Q9H772 168 aa12.28□□□□□ -0.44
HDAC3-208ENST00000476739 LTBP3Q9NS15 1303 aa12.28□□□□□ -0.44
HDAC3-208ENST00000476739 CSF1RP07333 972 aa12.27□□□□□ -0.45
HDAC3-208ENST00000476739 RPS8P62241 208 aaKnown RBP12.27□□□□□ -0.45
HDAC3-208ENST00000476739 FKBP4Q02790 459 aaKnown RBP eCLIP12.27□□□□□ -0.45
HDAC3-208ENST00000476739 RTKN2Q8IZC4 609 aa12.27□□□□□ -0.45
HDAC3-208ENST00000476739 FRAT1Q92837 279 aaPredicted RBP12.27□□□□□ -0.45
HDAC3-208ENST00000476739 SUCLG2Q96I99 432 aa12.27□□□□□ -0.45
HDAC3-208ENST00000476739 USP44Q9H0E7 712 aa12.27□□□□□ -0.45
HDAC3-208ENST00000476739 ZNF277Q9NRM2 450 aaPredicted RBP12.27□□□□□ -0.45
HDAC3-208ENST00000476739 C9orf78Q9NZ63 289 aaPredicted RBP12.27□□□□□ -0.45
HDAC3-208ENST00000476739 COL4A5P29400 1685 aa12.26□□□□□ -0.45
HDAC3-208ENST00000476739 LRRC37AA6NMS7 1700 aa12.26□□□□□ -0.45
HDAC3-208ENST00000476739 SPEF2Q9C093 1822 aa12.26□□□□□ -0.45
HDAC3-208ENST00000476739 TRIM27P14373 513 aa12.26□□□□□ -0.45
HDAC3-208ENST00000476739 HSP90B1P14625 803 aaKnown RBP12.26□□□□□ -0.45
HDAC3-208ENST00000476739 FAM161AQ3B820 660 aa12.26□□□□□ -0.45
HDAC3-208ENST00000476739 CC2D2BQ6DHV5 1058 aa12.26□□□□□ -0.45
HDAC3-208ENST00000476739 ZNF526Q8TF50 670 aaPredicted RBP12.26□□□□□ -0.45
HDAC3-208ENST00000476739 ARHGAP45Q92619 1136 aa12.26□□□□□ -0.45
HDAC3-208ENST00000476739 API5Q9BZZ5 524 aaKnown RBP12.26□□□□□ -0.45
HDAC3-208ENST00000476739 DICER1Q9UPY3 1922 aaKnown RBP12.26□□□□□ -0.45
HDAC3-208ENST00000476739 UTYO14607 1347 aa12.26□□□□□ -0.45
HDAC3-208ENST00000476739 KIF16BQ96L93 1317 aa12.26□□□□□ -0.45
HDAC3-208ENST00000476739 TIAM2Q8IVF5 1701 aa12.25□□□□□ -0.45
HDAC3-208ENST00000476739 ITGA6P23229 1130 aa12.25□□□□□ -0.45
HDAC3-208ENST00000476739 GPSM2P81274 684 aa12.25□□□□□ -0.45
HDAC3-208ENST00000476739 CLUAP1Q96AJ1 413 aa12.25□□□□□ -0.45
HDAC3-208ENST00000476739 PSMD1Q99460 953 aa12.25□□□□□ -0.45
HDAC3-208ENST00000476739 RTL9Q8NET4 1388 aa12.25□□□□□ -0.45
HDAC3-208ENST00000476739 DUOX1Q9NRD9 1551 aa12.25□□□□□ -0.45
HDAC3-208ENST00000476739 IARSP41252 1262 aaKnown RBP12.24□□□□□ -0.45
HDAC3-208ENST00000476739 CCT4P50991 539 aaKnown RBP12.24□□□□□ -0.45
HDAC3-208ENST00000476739 LTBP1Q14766 1721 aa12.24□□□□□ -0.45
HDAC3-208ENST00000476739 LMBR1LQ6UX01 489 aa12.24□□□□□ -0.45
HDAC3-208ENST00000476739 ATF7IPQ6VMQ6 1270 aa12.24□□□□□ -0.45
HDAC3-208ENST00000476739 ANKRD18AQ8IVF6 992 aa12.24□□□□□ -0.45
HDAC3-208ENST00000476739 MPNDQ8N594 471 aa12.24□□□□□ -0.45
HDAC3-208ENST00000476739 WTIPA6NIX2 430 aaPredicted RBP12.23□□□□□ -0.45
HDAC3-208ENST00000476739 ZKSCAN2Q63HK3 967 aa12.23□□□□□ -0.45
HDAC3-208ENST00000476739 INTS3Q68E01 1043 aaKnown RBP12.23□□□□□ -0.45
HDAC3-208ENST00000476739 DPP8Q6V1X1 898 aaPredicted RBP12.23□□□□□ -0.45
HDAC3-208ENST00000476739 TMC4Q7Z404 712 aa12.23□□□□□ -0.45
HDAC3-208ENST00000476739 ANKRD44Q8N8A2 993 aa12.23□□□□□ -0.45
HDAC3-208ENST00000476739 ZNF594Q96JF6 807 aaPredicted RBP12.23□□□□□ -0.45
HDAC3-208ENST00000476739 GPR101Q96P66 508 aaPredicted RBP12.23□□□□□ -0.45
HDAC3-208ENST00000476739 RTFDC1Q9BY42 306 aaPredicted RBP12.23□□□□□ -0.45
HDAC3-208ENST00000476739 BICC1Q9H694 974 aaKnown RBP12.23□□□□□ -0.45
HDAC3-208ENST00000476739 POLLQ9UGP5 575 aa12.23□□□□□ -0.45
HDAC3-208ENST00000476739 NSFL1CQ9UNZ2 370 aaKnown RBP12.23□□□□□ -0.45
HDAC3-208ENST00000476739 CHMP3Q9Y3E7 222 aa12.23□□□□□ -0.45
HDAC3-208ENST00000476739 IPO8O15397 1037 aaKnown RBP12.22□□□□□ -0.45
HDAC3-208ENST00000476739 RLBP1P12271 317 aa12.22□□□□□ -0.45
HDAC3-208ENST00000476739 AOC3Q16853 763 aa12.22□□□□□ -0.45
HDAC3-208ENST00000476739 GRIPAP1Q4V328 841 aa12.22□□□□□ -0.45
HDAC3-208ENST00000476739 TMEM57Q8N5G2 664 aa12.22□□□□□ -0.45
HDAC3-208ENST00000476739 CDC5LQ99459 802 aaKnown RBP12.22□□□□□ -0.45
HDAC3-208ENST00000476739 MEIS3Q99687 375 aa12.22□□□□□ -0.45
HDAC3-208ENST00000476739 TMX4Q9H1E5 349 aaPredicted RBP12.22□□□□□ -0.45
HDAC3-208ENST00000476739 BSDC1Q9NW68 430 aaPredicted RBP12.22□□□□□ -0.45
HDAC3-208ENST00000476739 ZNF541Q9H0D2 1346 aa12.21□□□□□ -0.45
HDAC3-208ENST00000476739 ANKRD18BA2A2Z9 1011 aa12.21□□□□□ -0.45
HDAC3-208ENST00000476739 PPIP5K2O43314 1243 aa12.21□□□□□ -0.45
HDAC3-208ENST00000476739 IFIT5Q13325 482 aaKnown RBP12.21□□□□□ -0.45
HDAC3-208ENST00000476739 RABL6Q3YEC7 729 aaPredicted RBP12.21□□□□□ -0.45
HDAC3-208ENST00000476739 GPBP1L1Q9HC44 474 aaPredicted RBP12.21□□□□□ -0.45
HDAC3-208ENST00000476739 NMRK2Q9NPI5 230 aa12.21□□□□□ -0.45
HDAC3-208ENST00000476739 MINPP1Q9UNW1 487 aa12.21□□□□□ -0.45
HDAC3-208ENST00000476739 ZC3H4Q9UPT8 1303 aaKnown RBP12.2□□□□□ -0.46
HDAC3-208ENST00000476739 FZD9O00144 591 aa12.2□□□□□ -0.46
HDAC3-208ENST00000476739 IGHMBP2P38935 993 aaKnown RBP12.2□□□□□ -0.46
HDAC3-208ENST00000476739 LARGE2Q8N3Y3 721 aa12.2□□□□□ -0.46
HDAC3-208ENST00000476739 TBC1D16Q8TBP0 767 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms