RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 LDHDQ86WU2 507 aa15.48■□□□□ 0.07
SYNE1-223ENST00000476519 NIM1KQ8IY84 436 aa15.48■□□□□ 0.07
SYNE1-223ENST00000476519 FAM9BQ8IZU0 186 aa15.48■□□□□ 0.07
SYNE1-223ENST00000476519 PI4KAP1Q8N8J0 262 aa15.48■□□□□ 0.07
SYNE1-223ENST00000476519 ZNF428Q96B54 188 aa15.48■□□□□ 0.07
SYNE1-223ENST00000476519 MAP3K2Q9Y2U5 619 aa15.48■□□□□ 0.07
SYNE1-223ENST00000476519 SALL2Q9Y467 1007 aaPredicted RBP15.48■□□□□ 0.07
SYNE1-223ENST00000476519 WDR90Q96KV7 1748 aa15.48■□□□□ 0.07
SYNE1-223ENST00000476519 RPS8P62241 208 aaKnown RBP15.47■□□□□ 0.07
SYNE1-223ENST00000476519 NEXNQ0ZGT2 675 aa15.47■□□□□ 0.07
SYNE1-223ENST00000476519 RTL5Q5HYW3 569 aaPredicted RBP15.47■□□□□ 0.07
SYNE1-223ENST00000476519 PNMA8AQ86V59 439 aaPredicted RBP15.47■□□□□ 0.07
SYNE1-223ENST00000476519 ZNRF3Q9ULT6 936 aa15.47■□□□□ 0.07
SYNE1-223ENST00000476519 FANCIQ9NVI1 1328 aa15.46■□□□□ 0.07
SYNE1-223ENST00000476519 VAMP4O75379 141 aa15.46■□□□□ 0.07
SYNE1-223ENST00000476519 EPHX2P34913 555 aa15.46■□□□□ 0.07
SYNE1-223ENST00000476519 CELF1Q92879 486 aaKnown RBP15.46■□□□□ 0.07
SYNE1-223ENST00000476519 DICER1Q9UPY3 1922 aaKnown RBP15.46■□□□□ 0.07
SYNE1-223ENST00000476519 CCDC88AQ3V6T2 1871 aa15.46■□□□□ 0.06
SYNE1-223ENST00000476519 PDE8AO60658 829 aa15.45■□□□□ 0.06
SYNE1-223ENST00000476519 KIAA2012Q0VF49 1180 aa15.45■□□□□ 0.06
SYNE1-223ENST00000476519 AOC3Q16853 763 aa15.45■□□□□ 0.06
SYNE1-223ENST00000476519 CCDC152Q4G0S7 254 aa15.45■□□□□ 0.06
SYNE1-223ENST00000476519 SLC51AQ86UW1 340 aa15.45■□□□□ 0.06
SYNE1-223ENST00000476519 KLRG1Q96E93 195 aa15.45■□□□□ 0.06
SYNE1-223ENST00000476519 MYH16Q9H6N6 1097 aa15.45■□□□□ 0.06
SYNE1-223ENST00000476519 GJA3Q9Y6H8 435 aa15.45■□□□□ 0.06
SYNE1-223ENST00000476519 IGKV5-2P06315 115 aa15.44■□□□□ 0.06
SYNE1-223ENST00000476519 LMOD1P29536 600 aaPredicted RBP15.44■□□□□ 0.06
SYNE1-223ENST00000476519 EXOSC9Q06265 439 aaKnown RBP15.44■□□□□ 0.06
SYNE1-223ENST00000476519 G2E3Q7L622 706 aa15.44■□□□□ 0.06
SYNE1-223ENST00000476519 NSFL1CQ9UNZ2 370 aaKnown RBP15.44■□□□□ 0.06
SYNE1-223ENST00000476519 CDHR2Q9BYE9 1310 aa15.43■□□□□ 0.06
SYNE1-223ENST00000476519 TIAM2Q8IVF5 1701 aa15.43■□□□□ 0.06
SYNE1-223ENST00000476519 POTEIP0CG38 1075 aa15.43■□□□□ 0.06
SYNE1-223ENST00000476519 POTEJP0CG39 1038 aa15.43■□□□□ 0.06
SYNE1-223ENST00000476519 HTRA3P83110 453 aa15.43■□□□□ 0.06
SYNE1-223ENST00000476519 FLIIQ13045 1269 aa15.43■□□□□ 0.06
SYNE1-223ENST00000476519 CXCL9Q07325 125 aa15.42■□□□□ 0.06
SYNE1-223ENST00000476519 TNIP1Q15025 636 aa15.42■□□□□ 0.06
SYNE1-223ENST00000476519 WASHC4Q2M389 1173 aa15.42■□□□□ 0.06
SYNE1-223ENST00000476519 EAPPQ56P03 285 aaPredicted RBP15.42■□□□□ 0.06
SYNE1-223ENST00000476519 CLEC11AQ9Y240 323 aa15.42■□□□□ 0.06
SYNE1-223ENST00000476519 NEURL1BA8MQ27 555 aa15.41■□□□□ 0.06
SYNE1-223ENST00000476519 H7C1W4 665 aa15.41■□□□□ 0.06
SYNE1-223ENST00000476519 ITGBL1O95965 494 aaPredicted RBP15.41■□□□□ 0.06
SYNE1-223ENST00000476519 SCNN1DP51172 638 aa15.41■□□□□ 0.06
SYNE1-223ENST00000476519 FKBP5Q13451 457 aaPredicted RBP15.41■□□□□ 0.06
SYNE1-223ENST00000476519 JMYQ8N9B5 988 aa15.41■□□□□ 0.06
SYNE1-223ENST00000476519 JARID2Q92833 1246 aaPredicted RBP15.41■□□□□ 0.06
SYNE1-223ENST00000476519 EYA3Q99504 573 aa15.41■□□□□ 0.06
SYNE1-223ENST00000476519 SPINK5Q9NQ38 1064 aaPredicted RBP15.41■□□□□ 0.06
SYNE1-223ENST00000476519 SEC31BQ9NQW1 1179 aa15.41■□□□□ 0.06
SYNE1-223ENST00000476519 CREBZFQ9NS37 354 aa15.41■□□□□ 0.06
SYNE1-223ENST00000476519 PODXL2Q9NZ53 605 aa15.41■□□□□ 0.06
SYNE1-223ENST00000476519 CACNA1SQ13698 1873 aa15.41■□□□□ 0.06
SYNE1-223ENST00000476519 ANKRD36CQ5JPF3 1778 aa15.41■□□□□ 0.06
SYNE1-223ENST00000476519 C6orf229H3BNL8 230 aa15.4■□□□□ 0.06
SYNE1-223ENST00000476519 GPSM2P81274 684 aa15.4■□□□□ 0.06
SYNE1-223ENST00000476519 CWF19L2Q2TBE0 894 aaKnown RBP15.4■□□□□ 0.06
SYNE1-223ENST00000476519 CIAPIN1Q6FI81 312 aa15.4■□□□□ 0.06
SYNE1-223ENST00000476519 USP50Q70EL3 339 aaPredicted RBP15.4■□□□□ 0.06
SYNE1-223ENST00000476519 CNTROBQ8N137 903 aa15.4■□□□□ 0.06
SYNE1-223ENST00000476519 LINS1Q8NG48 757 aa15.4■□□□□ 0.06
SYNE1-223ENST00000476519 DNAAF4Q8WXU2 420 aa15.4■□□□□ 0.06
SYNE1-223ENST00000476519 POLLQ9UGP5 575 aa15.4■□□□□ 0.06
SYNE1-223ENST00000476519 PASKQ96RG2 1323 aa15.4■□□□□ 0.06
SYNE1-223ENST00000476519 COL4A5P29400 1685 aa15.39■□□□□ 0.05
SYNE1-223ENST00000476519 EPS15P42566 896 aa15.39■□□□□ 0.05
SYNE1-223ENST00000476519 CTSWP56202 376 aa15.39■□□□□ 0.05
SYNE1-223ENST00000476519 GCKRQ14397 625 aa15.39■□□□□ 0.05
SYNE1-223ENST00000476519 TTLL11Q8NHH1 800 aa15.39■□□□□ 0.05
SYNE1-223ENST00000476519 TBC1D16Q8TBP0 767 aa15.39■□□□□ 0.05
SYNE1-223ENST00000476519 CDC5LQ99459 802 aaKnown RBP15.39■□□□□ 0.05
SYNE1-223ENST00000476519 GPRC5DQ9NZD1 345 aa15.39■□□□□ 0.05
SYNE1-223ENST00000476519 PCNTO95613 3336 aa15.38■□□□□ 0.05
SYNE1-223ENST00000476519 RAD17O75943 681 aa15.38■□□□□ 0.05
SYNE1-223ENST00000476519 ANKRD18AQ8IVF6 992 aa15.38■□□□□ 0.05
SYNE1-223ENST00000476519 PLA2G12BQ9BX93 195 aa15.38■□□□□ 0.05
SYNE1-223ENST00000476519 ZC3H12CQ9C0D7 883 aaKnown RBP15.38■□□□□ 0.05
SYNE1-223ENST00000476519 ADARB2Q9NS39 739 aaKnown RBP15.38■□□□□ 0.05
SYNE1-223ENST00000476519 ANKIB1Q9P2G1 1089 aa15.38■□□□□ 0.05
SYNE1-223ENST00000476519 ZNF521Q96K83 1311 aa15.38■□□□□ 0.05
SYNE1-223ENST00000476519 SCN4AP35499 1836 aa15.38■□□□□ 0.05
SYNE1-223ENST00000476519 GMPSP49915 693 aaPredicted RBP15.37■□□□□ 0.05
SYNE1-223ENST00000476519 UBE3BQ7Z3V4 1068 aa15.37■□□□□ 0.05
SYNE1-223ENST00000476519 DPF2Q92785 391 aa15.37■□□□□ 0.05
SYNE1-223ENST00000476519 CCDC85AQ96PX6 553 aaPredicted RBP15.37■□□□□ 0.05
SYNE1-223ENST00000476519 BSDC1Q9NW68 430 aaPredicted RBP15.37■□□□□ 0.05
SYNE1-223ENST00000476519 GGA1Q9UJY5 639 aa15.37■□□□□ 0.05
SYNE1-223ENST00000476519 YDJCA8MPS7 323 aa15.36■□□□□ 0.05
SYNE1-223ENST00000476519 RIMBP2O15034 1052 aa15.36■□□□□ 0.05
SYNE1-223ENST00000476519 MAP1SQ66K74 1059 aaPredicted RBP15.36■□□□□ 0.05
SYNE1-223ENST00000476519 BCL2L13Q9BXK5 485 aa15.36■□□□□ 0.05
SYNE1-223ENST00000476519 RTL9Q8NET4 1388 aa15.36■□□□□ 0.05
SYNE1-223ENST00000476519 TMEM88BA6NKF7 163 aa15.35■□□□□ 0.05
SYNE1-223ENST00000476519 E9PSI1 815 aa15.35■□□□□ 0.05
SYNE1-223ENST00000476519 CSF1RP07333 972 aa15.35■□□□□ 0.05
SYNE1-223ENST00000476519 ZC3H15Q8WU90 426 aaKnown RBP15.35■□□□□ 0.05
SYNE1-223ENST00000476519 GREM2Q9H772 168 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms