RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 BBOX1O75936 387 aa23.01■■□□□ 1.27
UPF3A-203ENST00000474056 PCCAP05165 728 aaPredicted RBP23.01■■□□□ 1.27
UPF3A-203ENST00000474056 IGKV5-2P06315 115 aa23.01■■□□□ 1.27
UPF3A-203ENST00000474056 FLIIQ13045 1269 aa23.01■■□□□ 1.27
UPF3A-203ENST00000474056 GRIPAP1Q4V328 841 aa23.01■■□□□ 1.27
UPF3A-203ENST00000474056 MYH16Q9H6N6 1097 aa23.01■■□□□ 1.27
UPF3A-203ENST00000474056 JARID2Q92833 1246 aaPredicted RBP23■■□□□ 1.27
UPF3A-203ENST00000474056 DUOX1Q9NRD9 1551 aa22.99■■□□□ 1.27
UPF3A-203ENST00000474056 FZD9O00144 591 aa22.99■■□□□ 1.27
UPF3A-203ENST00000474056 SP8Q8IXZ3 490 aa22.99■■□□□ 1.27
UPF3A-203ENST00000474056 CELF1Q92879 486 aaKnown RBP22.99■■□□□ 1.27
UPF3A-203ENST00000474056 TMX4Q9H1E5 349 aaPredicted RBP22.99■■□□□ 1.27
UPF3A-203ENST00000474056 SPEF2Q9C093 1822 aa22.98■■□□□ 1.27
UPF3A-203ENST00000474056 NEXNQ0ZGT2 675 aa22.97■■□□□ 1.27
UPF3A-203ENST00000474056 FKBP5Q13451 457 aaPredicted RBP22.97■■□□□ 1.27
UPF3A-203ENST00000474056 CWF19L2Q2TBE0 894 aaKnown RBP22.97■■□□□ 1.27
UPF3A-203ENST00000474056 JDP2Q8WYK2 163 aa22.97■■□□□ 1.27
UPF3A-203ENST00000474056 LTBP1Q14766 1721 aa22.96■■□□□ 1.27
UPF3A-203ENST00000474056 CCER2I3L3R5 266 aa22.96■■□□□ 1.27
UPF3A-203ENST00000474056 FSTL1Q12841 308 aa22.96■■□□□ 1.27
UPF3A-203ENST00000474056 LARGE2Q8N3Y3 721 aa22.96■■□□□ 1.27
UPF3A-203ENST00000474056 NEURL1BA8MQ27 555 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 PPIP5K2O43314 1243 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 PDE8AO60658 829 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 AOC3Q16853 763 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 DPP8Q6V1X1 898 aaPredicted RBP22.95■■□□□ 1.26
UPF3A-203ENST00000474056 TMC4Q7Z404 712 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 MPNDQ8N594 471 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 SMC1BQ8NDV3 1235 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 L3MBTL3Q96JM7 780 aaPredicted RBP22.95■■□□□ 1.26
UPF3A-203ENST00000474056 RTFDC1Q9BY42 306 aaPredicted RBP22.95■■□□□ 1.26
UPF3A-203ENST00000474056 CDHR2Q9BYE9 1310 aa22.95■■□□□ 1.26
UPF3A-203ENST00000474056 HSP90B1P14625 803 aaKnown RBP22.94■■□□□ 1.26
UPF3A-203ENST00000474056 DNAAF4Q8WXU2 420 aa22.94■■□□□ 1.26
UPF3A-203ENST00000474056 SEC31BQ9NQW1 1179 aa22.94■■□□□ 1.26
UPF3A-203ENST00000474056 CEP350Q5VT06 3117 aa22.93■■□□□ 1.26
UPF3A-203ENST00000474056 SUPT20HQ8NEM7 779 aa22.93■■□□□ 1.26
UPF3A-203ENST00000474056 CCDC85AQ96PX6 553 aaPredicted RBP22.93■■□□□ 1.26
UPF3A-203ENST00000474056 EIF6P56537 245 aaKnown RBP22.92■■□□□ 1.26
UPF3A-203ENST00000474056 NIM1KQ8IY84 436 aa22.92■■□□□ 1.26
UPF3A-203ENST00000474056 POTEIP0CG38 1075 aa22.91■■□□□ 1.26
UPF3A-203ENST00000474056 POTEJP0CG39 1038 aa22.91■■□□□ 1.26
UPF3A-203ENST00000474056 APLP1P51693 650 aa22.91■■□□□ 1.26
UPF3A-203ENST00000474056 CCDC152Q4G0S7 254 aa22.91■■□□□ 1.26
UPF3A-203ENST00000474056 VPS33BQ9H267 617 aa22.91■■□□□ 1.26
UPF3A-203ENST00000474056 IQCA1LA6NCM1 817 aa22.9■■□□□ 1.26
UPF3A-203ENST00000474056 RPS8P62241 208 aaKnown RBP22.9■■□□□ 1.26
UPF3A-203ENST00000474056 GPC2Q8N158 579 aa22.9■■□□□ 1.26
UPF3A-203ENST00000474056 ADAMTSL1Q8N6G6 1762 aa22.9■■□□□ 1.26
UPF3A-203ENST00000474056 F6X3S4 739 aa22.89■■□□□ 1.25
UPF3A-203ENST00000474056 CTSWP56202 376 aa22.89■■□□□ 1.25
UPF3A-203ENST00000474056 KIAA2012Q0VF49 1180 aa22.89■■□□□ 1.25
UPF3A-203ENST00000474056 GCKRQ14397 625 aa22.89■■□□□ 1.25
UPF3A-203ENST00000474056 UBE3BQ7Z3V4 1068 aa22.89■■□□□ 1.25
UPF3A-203ENST00000474056 TAF1DQ9H5J8 278 aaPredicted RBP22.89■■□□□ 1.25
UPF3A-203ENST00000474056 GJA3Q9Y6H8 435 aa22.89■■□□□ 1.25
UPF3A-203ENST00000474056 E9PSI1 815 aa22.88■■□□□ 1.25
UPF3A-203ENST00000474056 H7C1W4 665 aa22.88■■□□□ 1.25
UPF3A-203ENST00000474056 GPSM2P81274 684 aa22.88■■□□□ 1.25
UPF3A-203ENST00000474056 LINS1Q8NG48 757 aa22.88■■□□□ 1.25
UPF3A-203ENST00000474056 HACL1Q9UJ83 578 aa22.88■■□□□ 1.25
UPF3A-203ENST00000474056 NSFL1CQ9UNZ2 370 aaKnown RBP22.88■■□□□ 1.25
UPF3A-203ENST00000474056 SLFN5Q08AF3 891 aa22.87■■□□□ 1.25
UPF3A-203ENST00000474056 TTLL11Q8NHH1 800 aa22.87■■□□□ 1.25
UPF3A-203ENST00000474056 CASP7P55210 303 aa22.86■■□□□ 1.25
UPF3A-203ENST00000474056 HTRA3P83110 453 aa22.86■■□□□ 1.25
UPF3A-203ENST00000474056 POLLQ9UGP5 575 aa22.86■■□□□ 1.25
UPF3A-203ENST00000474056 EPHX2P34913 555 aa22.85■■□□□ 1.25
UPF3A-203ENST00000474056 BEND3Q5T5X7 828 aa22.85■■□□□ 1.25
UPF3A-203ENST00000474056 CDCA7LQ96GN5 454 aa22.85■■□□□ 1.25
UPF3A-203ENST00000474056 ZNRF3Q9ULT6 936 aa22.85■■□□□ 1.25
UPF3A-203ENST00000474056 SCN9AQ15858 1988 aa22.84■■□□□ 1.25
UPF3A-203ENST00000474056 SCNN1DP51172 638 aa22.84■■□□□ 1.25
UPF3A-203ENST00000474056 EAPPQ56P03 285 aaPredicted RBP22.84■■□□□ 1.25
UPF3A-203ENST00000474056 CHADLQ6NUI6 762 aa22.84■■□□□ 1.25
UPF3A-203ENST00000474056 ANKRD18AQ8IVF6 992 aa22.84■■□□□ 1.25
UPF3A-203ENST00000474056 GPR101Q96P66 508 aaPredicted RBP22.84■■□□□ 1.25
UPF3A-203ENST00000474056 PLA2G12BQ9BX93 195 aa22.84■■□□□ 1.25
UPF3A-203ENST00000474056 GREM2Q9H772 168 aa22.84■■□□□ 1.25
UPF3A-203ENST00000474056 YDJCA8MPS7 323 aa22.83■■□□□ 1.25
UPF3A-203ENST00000474056 C6orf229H3BNL8 230 aa22.83■■□□□ 1.25
UPF3A-203ENST00000474056 CXCL9Q07325 125 aa22.83■■□□□ 1.25
UPF3A-203ENST00000474056 WASHC4Q2M389 1173 aa22.83■■□□□ 1.25
UPF3A-203ENST00000474056 RTL9Q8NET4 1388 aa22.82■■□□□ 1.24
UPF3A-203ENST00000474056 RIMBP2O15034 1052 aa22.82■■□□□ 1.24
UPF3A-203ENST00000474056 LDHDQ86WU2 507 aa22.82■■□□□ 1.24
UPF3A-203ENST00000474056 TBC1D16Q8TBP0 767 aa22.82■■□□□ 1.24
UPF3A-203ENST00000474056 CDC5LQ99459 802 aaKnown RBP22.82■■□□□ 1.24
UPF3A-203ENST00000474056 PODXL2Q9NZ53 605 aa22.82■■□□□ 1.24
UPF3A-203ENST00000474056 LMOD1P29536 600 aaPredicted RBP22.81■■□□□ 1.24
UPF3A-203ENST00000474056 DIEXFQ68CQ4 756 aaKnown RBP22.81■■□□□ 1.24
UPF3A-203ENST00000474056 MRPL50Q8N5N7 158 aaKnown RBP22.81■■□□□ 1.24
UPF3A-203ENST00000474056 PSME4Q14997 1843 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 RAD17O75943 681 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 EPS15P42566 896 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 CIAPIN1Q6FI81 312 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 EYA3Q99504 573 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 DBNDD1Q9H9R9 158 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 ANKIB1Q9P2G1 1089 aa22.8■■□□□ 1.24
UPF3A-203ENST00000474056 A0A1B0GUL6 1792 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms