RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 RTKN2Q8IZC4 609 aa24.13■■□□□ 1.45
PTCD3-210ENST00000473829 GPBP1L1Q9HC44 474 aaPredicted RBP24.13■■□□□ 1.45
PTCD3-210ENST00000473829 H7C1W4 665 aa24.12■■□□□ 1.45
PTCD3-210ENST00000473829 PDE8AO60658 829 aa24.12■■□□□ 1.45
PTCD3-210ENST00000473829 UBE3BQ7Z3V4 1068 aa24.12■■□□□ 1.45
PTCD3-210ENST00000473829 CELF1Q92879 486 aaKnown RBP24.12■■□□□ 1.45
PTCD3-210ENST00000473829 ZNF277Q9NRM2 450 aaPredicted RBP24.12■■□□□ 1.45
PTCD3-210ENST00000473829 ATP6V0A2Q9Y487 856 aa24.12■■□□□ 1.45
PTCD3-210ENST00000473829 COL4A5P29400 1685 aa24.11■■□□□ 1.45
PTCD3-210ENST00000473829 CASP7P55210 303 aa24.11■■□□□ 1.45
PTCD3-210ENST00000473829 CC2D2BQ6DHV5 1058 aa24.11■■□□□ 1.45
PTCD3-210ENST00000473829 ZC3H4Q9UPT8 1303 aaKnown RBP24.1■■□□□ 1.45
PTCD3-210ENST00000473829 BBOX1O75936 387 aa24.1■■□□□ 1.45
PTCD3-210ENST00000473829 ALDH1L2Q3SY69 923 aa24.1■■□□□ 1.45
PTCD3-210ENST00000473829 CCDC85AQ96PX6 553 aaPredicted RBP24.1■■□□□ 1.45
PTCD3-210ENST00000473829 PSMD1Q99460 953 aa24.1■■□□□ 1.45
PTCD3-210ENST00000473829 SEC31BQ9NQW1 1179 aa24.1■■□□□ 1.45
PTCD3-210ENST00000473829 DUOX1Q9NRD9 1551 aa24.09■■□□□ 1.45
PTCD3-210ENST00000473829 CTSWP56202 376 aa24.09■■□□□ 1.45
PTCD3-210ENST00000473829 SMC4Q9NTJ3 1288 aa24.09■■□□□ 1.45
PTCD3-210ENST00000473829 SPEF2Q9C093 1822 aa24.08■■□□□ 1.45
PTCD3-210ENST00000473829 CT47B1P0C2W7 299 aaPredicted RBP24.08■■□□□ 1.45
PTCD3-210ENST00000473829 HSP90B1P14625 803 aaKnown RBP24.08■■□□□ 1.45
PTCD3-210ENST00000473829 SLC4A10Q6U841 1118 aa24.08■■□□□ 1.45
PTCD3-210ENST00000473829 LTBP1Q14766 1721 aa24.07■■□□□ 1.44
PTCD3-210ENST00000473829 SP8Q8IXZ3 490 aa24.07■■□□□ 1.44
PTCD3-210ENST00000473829 NMRK2Q9NPI5 230 aa24.07■■□□□ 1.44
PTCD3-210ENST00000473829 PTPRCP08575 1304 aa24.07■■□□□ 1.44
PTCD3-210ENST00000473829 IARSP41252 1262 aaKnown RBP24.06■■□□□ 1.44
PTCD3-210ENST00000473829 CCDC152Q4G0S7 254 aa24.06■■□□□ 1.44
PTCD3-210ENST00000473829 TTLL11Q8NHH1 800 aa24.06■■□□□ 1.44
PTCD3-210ENST00000473829 ZBED9Q6R2W3 1325 aa24.06■■□□□ 1.44
PTCD3-210ENST00000473829 GRIPAP1Q4V328 841 aa24.05■■□□□ 1.44
PTCD3-210ENST00000473829 KIF3CO14782 793 aa24.04■■□□□ 1.44
PTCD3-210ENST00000473829 RARSP54136 660 aaKnown RBP24.04■■□□□ 1.44
PTCD3-210ENST00000473829 TMC4Q7Z404 712 aa24.04■■□□□ 1.44
PTCD3-210ENST00000473829 PLA2G12BQ9BX93 195 aa24.04■■□□□ 1.44
PTCD3-210ENST00000473829 GLTPD2A6NH11 291 aa24.03■■□□□ 1.44
PTCD3-210ENST00000473829 RPS8P62241 208 aaKnown RBP24.03■■□□□ 1.44
PTCD3-210ENST00000473829 SRCIN1Q9C0H9 1055 aa24.03■■□□□ 1.44
PTCD3-210ENST00000473829 GREM2Q9H772 168 aa24.03■■□□□ 1.44
PTCD3-210ENST00000473829 KDM2BQ8NHM5 1336 aa24.03■■□□□ 1.44
PTCD3-210ENST00000473829 WDR90Q96KV7 1748 aa24.02■■□□□ 1.44
PTCD3-210ENST00000473829 ALDH1L1O75891 902 aa24.02■■□□□ 1.44
PTCD3-210ENST00000473829 DPP8Q6V1X1 898 aaPredicted RBP24.02■■□□□ 1.44
PTCD3-210ENST00000473829 MPNDQ8N594 471 aa24.02■■□□□ 1.44
PTCD3-210ENST00000473829 RTFDC1Q9BY42 306 aaPredicted RBP24.02■■□□□ 1.44
PTCD3-210ENST00000473829 TMX4Q9H1E5 349 aaPredicted RBP24.02■■□□□ 1.44
PTCD3-210ENST00000473829 RTL9Q8NET4 1388 aa24.02■■□□□ 1.44
PTCD3-210ENST00000473829 GRM8O00222 908 aa24.01■■□□□ 1.43
PTCD3-210ENST00000473829 ZNF541Q9H0D2 1346 aa24.01■■□□□ 1.43
PTCD3-210ENST00000473829 BRPF1P55201 1214 aaPredicted RBP24■■□□□ 1.43
PTCD3-210ENST00000473829 AOC3Q16853 763 aa24■■□□□ 1.43
PTCD3-210ENST00000473829 CSF1RP07333 972 aa23.99■■□□□ 1.43
PTCD3-210ENST00000473829 GPSM2P81274 684 aa23.99■■□□□ 1.43
PTCD3-210ENST00000473829 FOXO4P98177 505 aa23.99■■□□□ 1.43
PTCD3-210ENST00000473829 FAM161AQ3B820 660 aa23.99■■□□□ 1.43
PTCD3-210ENST00000473829 EPHA10Q5JZY3 1008 aa23.99■■□□□ 1.43
PTCD3-210ENST00000473829 RRAGCQ9HB90 399 aa23.99■■□□□ 1.43
PTCD3-210ENST00000473829 NOB1Q9ULX3 412 aaKnown RBP23.99■■□□□ 1.43
PTCD3-210ENST00000473829 PPIP5K2O43314 1243 aa23.98■■□□□ 1.43
PTCD3-210ENST00000473829 ANKRD18AQ8IVF6 992 aa23.98■■□□□ 1.43
PTCD3-210ENST00000473829 LARGE2Q8N3Y3 721 aa23.98■■□□□ 1.43
PTCD3-210ENST00000473829 FZD9O00144 591 aa23.97■■□□□ 1.43
PTCD3-210ENST00000473829 DDNO94850 711 aaPredicted RBP23.97■■□□□ 1.43
PTCD3-210ENST00000473829 NBPF7P0C2Y1 421 aaPredicted RBP23.97■■□□□ 1.43
PTCD3-210ENST00000473829 C9orf78Q9NZ63 289 aaPredicted RBP23.97■■□□□ 1.43
PTCD3-210ENST00000473829 NSFL1CQ9UNZ2 370 aaKnown RBP23.97■■□□□ 1.43
PTCD3-210ENST00000473829 UTYO14607 1347 aa23.96■■□□□ 1.43
PTCD3-210ENST00000473829 POTECB2RU33 542 aa23.96■■□□□ 1.43
PTCD3-210ENST00000473829 DPY19L2Q6NUT2 758 aa23.96■■□□□ 1.43
PTCD3-210ENST00000473829 SUPT20HQ8NEM7 779 aa23.96■■□□□ 1.43
PTCD3-210ENST00000473829 CDC5LQ99459 802 aaKnown RBP23.96■■□□□ 1.43
PTCD3-210ENST00000473829 POLLQ9UGP5 575 aa23.96■■□□□ 1.43
PTCD3-210ENST00000473829 BCAR3O75815 825 aa23.95■■□□□ 1.42
PTCD3-210ENST00000473829 ITGA6P23229 1130 aa23.95■■□□□ 1.42
PTCD3-210ENST00000473829 C1QTNF8P60827 252 aa23.95■■□□□ 1.42
PTCD3-210ENST00000473829 JDP2Q8WYK2 163 aa23.95■■□□□ 1.42
PTCD3-210ENST00000473829 KAZALD1Q96I82 304 aa23.95■■□□□ 1.42
PTCD3-210ENST00000473829 SUCLG2Q96I99 432 aa23.95■■□□□ 1.42
PTCD3-210ENST00000473829 A0A1B0GUL6 1792 aa23.94■■□□□ 1.42
PTCD3-210ENST00000473829 KIAA2012Q0VF49 1180 aa23.94■■□□□ 1.42
PTCD3-210ENST00000473829 GPR101Q96P66 508 aaPredicted RBP23.94■■□□□ 1.42
PTCD3-210ENST00000473829 KIF16BQ96L93 1317 aa23.93■■□□□ 1.42
PTCD3-210ENST00000473829 LMBR1LQ6UX01 489 aa23.93■■□□□ 1.42
PTCD3-210ENST00000473829 NIM1KQ8IY84 436 aa23.93■■□□□ 1.42
PTCD3-210ENST00000473829 TBC1D16Q8TBP0 767 aa23.93■■□□□ 1.42
PTCD3-210ENST00000473829 VPS33BQ9H267 617 aa23.93■■□□□ 1.42
PTCD3-210ENST00000473829 PODXL2Q9NZ53 605 aa23.93■■□□□ 1.42
PTCD3-210ENST00000473829 API5Q9BZZ5 524 aaKnown RBP23.92■■□□□ 1.42
PTCD3-210ENST00000473829 BSDC1Q9NW68 430 aaPredicted RBP23.92■■□□□ 1.42
PTCD3-210ENST00000473829 USP44Q9H0E7 712 aa23.91■■□□□ 1.42
PTCD3-210ENST00000473829 TNNQ9UQP3 1299 aa23.91■■□□□ 1.42
PTCD3-210ENST00000473829 CHMP3Q9Y3E7 222 aa23.91■■□□□ 1.42
PTCD3-210ENST00000473829 SCN4AP35499 1836 aa23.9■■□□□ 1.42
PTCD3-210ENST00000473829 C6orf229H3BNL8 230 aa23.9■■□□□ 1.42
PTCD3-210ENST00000473829 VEGFAP15692 232 aaPredicted RBP23.9■■□□□ 1.42
PTCD3-210ENST00000473829 L3MBTL3Q96JM7 780 aaPredicted RBP23.9■■□□□ 1.42
PTCD3-210ENST00000473829 ANKIB1Q9P2G1 1089 aa23.9■■□□□ 1.42
PTCD3-210ENST00000473829 MINPP1Q9UNW1 487 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms