RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 SLFNL1Q499Z3 407 aa7.57□□□□□ -1.2
CLK1-210ENST00000473565 HSP90AB3PQ58FF7 597 aa7.57□□□□□ -1.2
CLK1-210ENST00000473565 QTRT2Q9H974 415 aaKnown RBP7.57□□□□□ -1.2
CLK1-210ENST00000473565 NIP7Q9Y221 180 aaKnown RBP eCLIP7.57□□□□□ -1.2
CLK1-210ENST00000473565 COL5A3P25940 1745 aaPredicted RBP7.57□□□□□ -1.2
CLK1-210ENST00000473565 ERVV-1B6SEH8 477 aa7.57□□□□□ -1.2
CLK1-210ENST00000473565 SGSM2O43147 1006 aa7.57□□□□□ -1.2
CLK1-210ENST00000473565 ITGA6P23229 1130 aa7.57□□□□□ -1.2
CLK1-210ENST00000473565 ADORA1P30542 326 aa7.57□□□□□ -1.2
CLK1-210ENST00000473565 CTSWP56202 376 aa7.57□□□□□ -1.2
CLK1-210ENST00000473565 IFIT5Q13325 482 aaKnown RBP7.57□□□□□ -1.2
CLK1-210ENST00000473565 FSD1Q9BTV5 496 aa7.57□□□□□ -1.2
CLK1-210ENST00000473565 DIAPH3Q9NSV4 1193 aa7.57□□□□□ -1.2
CLK1-210ENST00000473565 SRP68Q9UHB9 627 aaKnown RBP7.57□□□□□ -1.2
CLK1-210ENST00000473565 CSF1RP07333 972 aa7.57□□□□□ -1.2
CLK1-210ENST00000473565 IL15P40933 162 aaPredicted RBP7.57□□□□□ -1.2
CLK1-210ENST00000473565 NOL8Q76FK4 1167 aaKnown RBP7.57□□□□□ -1.2
CLK1-210ENST00000473565 DDX46Q7L014 1031 aaKnown RBP7.57□□□□□ -1.2
CLK1-210ENST00000473565 CCDC24Q8N4L8 307 aa7.57□□□□□ -1.2
CLK1-210ENST00000473565 ANTXR1Q9H6X2 564 aa7.57□□□□□ -1.2
CLK1-210ENST00000473565 TRPC5Q9UL62 973 aaPredicted RBP7.57□□□□□ -1.2
CLK1-210ENST00000473565 A0A1B0GUL7 405 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 SNAP23O00161 211 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 PTH1RQ03431 593 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 NMIQ13287 307 aaPredicted RBP7.56□□□□□ -1.2
CLK1-210ENST00000473565 HELBQ8NG08 1087 aaPredicted RBP7.56□□□□□ -1.2
CLK1-210ENST00000473565 SEC31BQ9NQW1 1179 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 CCNL1Q9UK58 526 aaPredicted RBP7.56□□□□□ -1.2
CLK1-210ENST00000473565 MYH3P11055 1940 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 ATRNO75882 1429 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 CDHR2Q9BYE9 1310 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 A0A0D9SFI3 127 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 GNPATO15228 680 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 EVI5LQ96CN4 794 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 UPF3BQ9BZI7 483 aaKnown RBP7.56□□□□□ -1.2
CLK1-210ENST00000473565 SNRKQ9NRH2 765 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 RREB1Q92766 1687 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 FRAT2O75474 233 aaPredicted RBP7.56□□□□□ -1.2
CLK1-210ENST00000473565 PHF14O94880 888 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 NFKBIBQ15653 356 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 LDHAL6AQ6ZMR3 332 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 SNX21Q969T3 373 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 SEC62Q99442 399 aaKnown RBP7.56□□□□□ -1.2
CLK1-210ENST00000473565 PLA2G12BQ9BX93 195 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 LSG1Q9H089 658 aaKnown RBP7.56□□□□□ -1.2
CLK1-210ENST00000473565 CEP126Q9P2H0 1117 aa7.56□□□□□ -1.2
CLK1-210ENST00000473565 ZNF609O15014 1411 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 SH3TC1Q8TE82 1336 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 PDE8AO60658 829 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 ATP5JP18859 108 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 RABEP1Q15276 862 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 C3orf67Q6ZVT6 689 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 RASEFQ8IZ41 740 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 UTP14AQ9BVJ6 771 aaKnown RBP7.55□□□□□ -1.2
CLK1-210ENST00000473565 CNNM1Q9NRU3 951 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 RIC1Q4ADV7 1423 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 SBF2Q86WG5 1849 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 NHSQ6T4R5 1651 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 K7ELQ4 463 aaPredicted RBP7.55□□□□□ -1.2
CLK1-210ENST00000473565 GOLIM4O00461 696 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 NEK4P51957 841 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 METTL24Q5JXM2 366 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 USPL1Q5W0Q7 1092 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 PI16Q6UXB8 463 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 CCDC129Q6ZRS4 1044 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 ZNF589Q86UQ0 364 aaPredicted RBP7.55□□□□□ -1.2
CLK1-210ENST00000473565 BCL2L12Q9HB09 334 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 TAF1P21675 1872 aa7.55□□□□□ -1.2
CLK1-210ENST00000473565 COL4A1P02462 1669 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 ANKRD18BA2A2Z9 1011 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 CIAO1O76071 339 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 NTSR2O95665 410 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 HSP90AA1P07900 732 aaKnown RBP7.54□□□□□ -1.2
CLK1-210ENST00000473565 CPA1P15085 419 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 SCARF1Q14162 830 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 TBC1D9BQ66K14 1250 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 RAD50Q92878 1312 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 COL9A3Q14050 684 aaPredicted RBP7.54□□□□□ -1.2
CLK1-210ENST00000473565 XAGE2Q96GT9 111 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 LARP6Q9BRS8 491 aaKnown RBP7.54□□□□□ -1.2
CLK1-210ENST00000473565 LRRC4BQ9NT99 713 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 RIPOR2Q9Y4F9 1068 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 BRWD3Q6RI45 1802 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 SPEF2Q9C093 1822 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 GOLGB1Q14789 3259 aaKnown RBP7.54□□□□□ -1.2
CLK1-210ENST00000473565 TAF5LO75529 589 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 ERFEQ4G0M1 354 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 GORABQ5T7V8 394 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 KIAA1211Q6ZU35 1233 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 HAUS7Q99871 368 aa7.54□□□□□ -1.2
CLK1-210ENST00000473565 CICQ96RK0 1608 aaPredicted RBP7.53□□□□□ -1.2
CLK1-210ENST00000473565 DDX60Q8IY21 1712 aaKnown RBP7.53□□□□□ -1.2
CLK1-210ENST00000473565 ONECUT3O60422 494 aaPredicted RBP7.53□□□□□ -1.2
CLK1-210ENST00000473565 DTNBO60941 627 aa7.53□□□□□ -1.2
CLK1-210ENST00000473565 TRIM37O94972 964 aa7.53□□□□□ -1.2
CLK1-210ENST00000473565 MCCP23508 829 aa7.53□□□□□ -1.2
CLK1-210ENST00000473565 HSPA4P34932 840 aa7.53□□□□□ -1.2
CLK1-210ENST00000473565 FKBP4Q02790 459 aaKnown RBP eCLIP7.53□□□□□ -1.2
CLK1-210ENST00000473565 PRPF40BQ6NWY9 871 aaKnown RBP7.53□□□□□ -1.2
CLK1-210ENST00000473565 TAF6LQ9Y6J9 622 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms