RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 LRP5O75197 1615 aa15.76■□□□□ 0.11
VPS13D-205ENST00000473099 RTL9Q8NET4 1388 aa15.75■□□□□ 0.11
VPS13D-205ENST00000473099 TTC41PQ6P2S7 1318 aa15.75■□□□□ 0.11
VPS13D-205ENST00000473099 IL15P40933 162 aaPredicted RBP15.75■□□□□ 0.11
VPS13D-205ENST00000473099 C16orf71Q8IYS4 520 aaPredicted RBP15.75■□□□□ 0.11
VPS13D-205ENST00000473099 FLAD1Q8NFF5 587 aa15.75■□□□□ 0.11
VPS13D-205ENST00000473099 TTLL11Q8NHH1 800 aa15.75■□□□□ 0.11
VPS13D-205ENST00000473099 SETDB2Q96T68 719 aa15.75■□□□□ 0.11
VPS13D-205ENST00000473099 BCL2L12Q9HB09 334 aa15.75■□□□□ 0.11
VPS13D-205ENST00000473099 IL1RAPL2Q9NP60 686 aa15.75■□□□□ 0.11
VPS13D-205ENST00000473099 A0A1B0GUL6 1792 aa15.75■□□□□ 0.11
VPS13D-205ENST00000473099 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.74■□□□□ 0.11
VPS13D-205ENST00000473099 ANKRD18BA2A2Z9 1011 aa15.74■□□□□ 0.11
VPS13D-205ENST00000473099 EYA2O00167 538 aa15.74■□□□□ 0.11
VPS13D-205ENST00000473099 ERC2O15083 957 aa15.74■□□□□ 0.11
VPS13D-205ENST00000473099 SASH1O94885 1247 aa15.74■□□□□ 0.11
VPS13D-205ENST00000473099 IFIT2P09913 472 aaKnown RBP15.74■□□□□ 0.11
VPS13D-205ENST00000473099 TAF7LQ5H9L4 462 aa15.74■□□□□ 0.11
VPS13D-205ENST00000473099 SIL1Q9H173 461 aa15.74■□□□□ 0.11
VPS13D-205ENST00000473099 GPR108Q9NPR9 543 aa15.74■□□□□ 0.11
VPS13D-205ENST00000473099 RBM19Q9Y4C8 960 aaKnown RBP15.74■□□□□ 0.11
VPS13D-205ENST00000473099 ARAP2Q8WZ64 1704 aa15.74■□□□□ 0.11
VPS13D-205ENST00000473099 CARMIL3Q8ND23 1372 aa15.74■□□□□ 0.11
VPS13D-205ENST00000473099 CCDC152Q4G0S7 254 aa15.73■□□□□ 0.11
VPS13D-205ENST00000473099 TBC1D9BQ66K14 1250 aa15.73■□□□□ 0.11
VPS13D-205ENST00000473099 PROM2Q8N271 834 aa15.73■□□□□ 0.11
VPS13D-205ENST00000473099 SRP68Q9UHB9 627 aaKnown RBP15.73■□□□□ 0.11
VPS13D-205ENST00000473099 RIC1Q4ADV7 1423 aa15.72■□□□□ 0.11
VPS13D-205ENST00000473099 PHF14O94880 888 aa15.72■□□□□ 0.11
VPS13D-205ENST00000473099 EN1Q05925 392 aaPredicted RBP15.72■□□□□ 0.11
VPS13D-205ENST00000473099 TPTE2Q6XPS3 522 aa15.72■□□□□ 0.11
VPS13D-205ENST00000473099 KLHDC4Q8TBB5 520 aa15.72■□□□□ 0.11
VPS13D-205ENST00000473099 OTUD7AQ8TE49 926 aaPredicted RBP15.72■□□□□ 0.11
VPS13D-205ENST00000473099 UPF2Q9HAU5 1272 aaKnown RBP15.72■□□□□ 0.11
VPS13D-205ENST00000473099 MYH7P12883 1935 aa15.71■□□□□ 0.11
VPS13D-205ENST00000473099 CDC45O75419 566 aa15.71■□□□□ 0.11
VPS13D-205ENST00000473099 GLRX3O76003 335 aaKnown RBP15.71■□□□□ 0.11
VPS13D-205ENST00000473099 ITGA6P23229 1130 aa15.71■□□□□ 0.11
VPS13D-205ENST00000473099 GTF2E1P29083 439 aaPredicted RBP15.71■□□□□ 0.11
VPS13D-205ENST00000473099 SLC10A5Q5PT55 438 aa15.71■□□□□ 0.11
VPS13D-205ENST00000473099 CASC1Q6TDU7 716 aa15.71■□□□□ 0.11
VPS13D-205ENST00000473099 AACSQ86V21 672 aa15.71■□□□□ 0.11
VPS13D-205ENST00000473099 TAF1P21675 1872 aa15.7■□□□□ 0.1
VPS13D-205ENST00000473099 GSPT1P15170 499 aaKnown RBP15.7■□□□□ 0.1
VPS13D-205ENST00000473099 ATG9AQ7Z3C6 839 aa15.7■□□□□ 0.1
VPS13D-205ENST00000473099 NBPF5PQ86XG9 351 aaPredicted RBP15.7■□□□□ 0.1
VPS13D-205ENST00000473099 NUTM1Q86Y26 1132 aa15.7■□□□□ 0.1
VPS13D-205ENST00000473099 SYNE4Q8N205 404 aa15.7■□□□□ 0.1
VPS13D-205ENST00000473099 AKT1S1Q96B36 256 aa15.7■□□□□ 0.1
VPS13D-205ENST00000473099 BCL11AQ9H165 835 aa15.7■□□□□ 0.1
VPS13D-205ENST00000473099 GREM2Q9H772 168 aa15.7■□□□□ 0.1
VPS13D-205ENST00000473099 ECHDC1Q9NTX5 307 aa15.7■□□□□ 0.1
VPS13D-205ENST00000473099 AKAP2Q9Y2D5 859 aa15.7■□□□□ 0.1
VPS13D-205ENST00000473099 NRXN2Q9P2S2 1712 aa15.7■□□□□ 0.1
VPS13D-205ENST00000473099 PSDA5PKW4 1024 aaPredicted RBP15.69■□□□□ 0.1
VPS13D-205ENST00000473099 FAM177BA6PVY3 158 aa15.69■□□□□ 0.1
VPS13D-205ENST00000473099 TFCP2Q12800 502 aa15.69■□□□□ 0.1
VPS13D-205ENST00000473099 TNNI3KQ59H18 835 aa15.69■□□□□ 0.1
VPS13D-205ENST00000473099 AMIGO3Q86WK7 504 aa15.69■□□□□ 0.1
VPS13D-205ENST00000473099 TFCP2L1Q9NZI6 479 aa15.69■□□□□ 0.1
VPS13D-205ENST00000473099 CEP126Q9P2H0 1117 aa15.69■□□□□ 0.1
VPS13D-205ENST00000473099 FPGT-TNNI3KV9GXZ4 949 aa15.69■□□□□ 0.1
VPS13D-205ENST00000473099 ZNF609O15014 1411 aa15.68■□□□□ 0.1
VPS13D-205ENST00000473099 GYS1P13807 737 aa15.68■□□□□ 0.1
VPS13D-205ENST00000473099 HCLS1P14317 486 aaPredicted RBP15.68■□□□□ 0.1
VPS13D-205ENST00000473099 SDSP20132 328 aa15.68■□□□□ 0.1
VPS13D-205ENST00000473099 SF3B3Q15393 1217 aaKnown RBP15.68■□□□□ 0.1
VPS13D-205ENST00000473099 LDHAL6AQ6ZMR3 332 aa15.68■□□□□ 0.1
VPS13D-205ENST00000473099 BICDL1Q6ZP65 573 aa15.68■□□□□ 0.1
VPS13D-205ENST00000473099 EAF2Q96CJ1 260 aaPredicted RBP15.68■□□□□ 0.1
VPS13D-205ENST00000473099 CDC5LQ99459 802 aaKnown RBP15.68■□□□□ 0.1
VPS13D-205ENST00000473099 MYH13Q9UKX3 1938 aa15.67■□□□□ 0.1
VPS13D-205ENST00000473099 ERFEQ4G0M1 354 aa15.67■□□□□ 0.1
VPS13D-205ENST00000473099 PI4K2BQ8TCG2 481 aa15.67■□□□□ 0.1
VPS13D-205ENST00000473099 ZNF594Q96JF6 807 aaPredicted RBP15.67■□□□□ 0.1
VPS13D-205ENST00000473099 NLRP3Q96P20 1036 aa15.67■□□□□ 0.1
VPS13D-205ENST00000473099 CNNM1Q9NRU3 951 aa15.67■□□□□ 0.1
VPS13D-205ENST00000473099 TNRC6CQ9HCJ0 1690 aaKnown RBP15.67■□□□□ 0.1
VPS13D-205ENST00000473099 NPHP1O15259 732 aa15.66■□□□□ 0.1
VPS13D-205ENST00000473099 IGHMBP2P38935 993 aaKnown RBP15.66■□□□□ 0.1
VPS13D-205ENST00000473099 NFIXQ14938 502 aa15.66■□□□□ 0.1
VPS13D-205ENST00000473099 EZH2Q15910 746 aaKnown RBP15.66■□□□□ 0.1
VPS13D-205ENST00000473099 LRRC24Q50LG9 513 aa15.66■□□□□ 0.1
VPS13D-205ENST00000473099 SMIM5Q71RC9 77 aa15.66■□□□□ 0.1
VPS13D-205ENST00000473099 CNTROBQ8N137 903 aa15.66■□□□□ 0.1
VPS13D-205ENST00000473099 CAMKK2Q96RR4 588 aa15.66■□□□□ 0.1
VPS13D-205ENST00000473099 RIPOR2Q9Y4F9 1068 aa15.66■□□□□ 0.1
VPS13D-205ENST00000473099 MROH5Q6ZUA9 1318 aa15.66■□□□□ 0.1
VPS13D-205ENST00000473099 ABCC12Q96J65 1359 aa15.65■□□□□ 0.1
VPS13D-205ENST00000473099 AKAP11Q9UKA4 1901 aa15.65■□□□□ 0.1
VPS13D-205ENST00000473099 TRIM6-TRIM34B2RNG4 842 aa15.65■□□□□ 0.1
VPS13D-205ENST00000473099 ANP32AP39687 249 aaKnown RBP15.65■□□□□ 0.1
VPS13D-205ENST00000473099 ZNF827Q17R98 1081 aa15.65■□□□□ 0.1
VPS13D-205ENST00000473099 TBC1D9Q6ZT07 1266 aa15.65■□□□□ 0.1
VPS13D-205ENST00000473099 NLGN1Q8N2Q7 840 aa15.65■□□□□ 0.1
VPS13D-205ENST00000473099 CNBD1Q8NA66 436 aa15.65■□□□□ 0.1
VPS13D-205ENST00000473099 CCDC85AQ96PX6 553 aaPredicted RBP15.65■□□□□ 0.1
VPS13D-205ENST00000473099 MPHOSPH8Q99549 860 aa15.65■□□□□ 0.1
VPS13D-205ENST00000473099 ANKRD31Q8N7Z5 1873 aa15.65■□□□□ 0.1
VPS13D-205ENST00000473099 ATP5JP18859 108 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms