RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 EPS15P42566 896 aa7.27□□□□□ -1.25
PTPN4-209ENST00000469511 SOX10P56693 466 aa7.27□□□□□ -1.25
PTPN4-209ENST00000469511 STYK1Q6J9G0 422 aa7.27□□□□□ -1.25
PTPN4-209ENST00000469511 DLK2Q6UY11 383 aa7.27□□□□□ -1.25
PTPN4-209ENST00000469511 POLR3GLQ9BT43 218 aa7.27□□□□□ -1.25
PTPN4-209ENST00000469511 SLC24A3Q9HC58 644 aa7.27□□□□□ -1.25
PTPN4-209ENST00000469511 MRC1P22897 1456 aa7.27□□□□□ -1.25
PTPN4-209ENST00000469511 SIPA1L3O60292 1781 aaPredicted RBP7.27□□□□□ -1.25
PTPN4-209ENST00000469511 FZD9O00144 591 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 GPR37O15354 613 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 KCNQ3O43525 872 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 CAMTA2O94983 1202 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 HMOX1P09601 288 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 IL13P35225 146 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 FKBP4Q02790 459 aaKnown RBP eCLIP7.26□□□□□ -1.25
PTPN4-209ENST00000469511 DGKZQ13574 1117 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 MTHFSDQ2M296 383 aaKnown RBP7.26□□□□□ -1.25
PTPN4-209ENST00000469511 AKAP4Q5JQC9 854 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 MAMSTRQ6ZN01 415 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 SYNE4Q8N205 404 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 DDX12PQ92771 950 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 CNKSR1Q969H4 720 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 MASTLQ96GX5 879 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 ZNF496Q96IT1 587 aaPredicted RBP7.26□□□□□ -1.25
PTPN4-209ENST00000469511 PCDHGA4Q9Y5G9 962 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 SNED1Q8TER0 1413 aa7.26□□□□□ -1.25
PTPN4-209ENST00000469511 PRAMEF22A3QJZ6 481 aa7.25□□□□□ -1.25
PTPN4-209ENST00000469511 FAM177BA6PVY3 158 aa7.25□□□□□ -1.25
PTPN4-209ENST00000469511 SCNN1DP51172 638 aa7.25□□□□□ -1.25
PTPN4-209ENST00000469511 CCDC93Q567U6 631 aa7.25□□□□□ -1.25
PTPN4-209ENST00000469511 CNBD1Q8NA66 436 aa7.25□□□□□ -1.25
PTPN4-209ENST00000469511 GJA3Q9Y6H8 435 aa7.25□□□□□ -1.25
PTPN4-209ENST00000469511 TLL2Q9Y6L7 1015 aa7.25□□□□□ -1.25
PTPN4-209ENST00000469511 IARSP41252 1262 aaKnown RBP7.24□□□□□ -1.25
PTPN4-209ENST00000469511 CIAPIN1Q6FI81 312 aa7.24□□□□□ -1.25
PTPN4-209ENST00000469511 SETDB2Q96T68 719 aa7.24□□□□□ -1.25
PTPN4-209ENST00000469511 SCUBE2Q9NQ36 999 aa7.24□□□□□ -1.25
PTPN4-209ENST00000469511 TAF1P21675 1872 aa7.24□□□□□ -1.25
PTPN4-209ENST00000469511 AKAP11Q9UKA4 1901 aa7.23□□□□□ -1.25
PTPN4-209ENST00000469511 BRPF1P55201 1214 aaPredicted RBP7.23□□□□□ -1.25
PTPN4-209ENST00000469511 PNMA8AQ86V59 439 aaPredicted RBP7.23□□□□□ -1.25
PTPN4-209ENST00000469511 GPC2Q8N158 579 aa7.23□□□□□ -1.25
PTPN4-209ENST00000469511 IL17REQ8NFR9 667 aa7.23□□□□□ -1.25
PTPN4-209ENST00000469511 BEGAINQ9BUH8 593 aa7.23□□□□□ -1.25
PTPN4-209ENST00000469511 GLIS2Q9BZE0 524 aaPredicted RBP7.23□□□□□ -1.25
PTPN4-209ENST00000469511 PANK3Q9H999 370 aa7.23□□□□□ -1.25
PTPN4-209ENST00000469511 PDZRN3Q9UPQ7 1066 aa7.23□□□□□ -1.25
PTPN4-209ENST00000469511 USP16Q9Y5T5 823 aa7.23□□□□□ -1.25
PTPN4-209ENST00000469511 NUP98P52948 1817 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 HEG1Q9ULI3 1381 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 A0A087WZG4 1122 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 SHTN1A0MZ66 631 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 KLRG2A4D1S0 409 aaPredicted RBP7.22□□□□□ -1.25
PTPN4-209ENST00000469511 TCERG1O14776 1098 aaKnown RBP7.22□□□□□ -1.25
PTPN4-209ENST00000469511 NPHP1O15259 732 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 STARD3NLO95772 234 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 HOXB3P14651 431 aaPredicted RBP7.22□□□□□ -1.25
PTPN4-209ENST00000469511 NPR1P16066 1061 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 MAP2K2P36507 400 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 IL6STP40189 918 aaPredicted RBP7.22□□□□□ -1.25
PTPN4-209ENST00000469511 ECE1P42892 770 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 ST5P78524 1137 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 DOK7Q18PE1 504 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 CDCA8Q53HL2 280 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 SOGA3Q5TF21 947 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 SAPCD2Q86UD0 394 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 DZIP3Q86Y13 1208 aaKnown RBP7.22□□□□□ -1.25
PTPN4-209ENST00000469511 EPAS1Q99814 870 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 ZSWIM6Q9HCJ5 1215 aa7.22□□□□□ -1.25
PTPN4-209ENST00000469511 CELF2O95319 508 aaKnown RBP7.21□□□□□ -1.26
PTPN4-209ENST00000469511 HIRAP54198 1017 aaPredicted RBP7.21□□□□□ -1.26
PTPN4-209ENST00000469511 HLFQ16534 295 aa7.21□□□□□ -1.26
PTPN4-209ENST00000469511 ZNF790Q6PG37 636 aa7.21□□□□□ -1.26
PTPN4-209ENST00000469511 NBPF5PQ86XG9 351 aaPredicted RBP7.21□□□□□ -1.26
PTPN4-209ENST00000469511 SLAIN1Q8ND83 568 aa7.21□□□□□ -1.26
PTPN4-209ENST00000469511 ZNF408Q9H9D4 720 aa7.21□□□□□ -1.26
PTPN4-209ENST00000469511 ABCC12Q96J65 1359 aa7.2□□□□□ -1.26
PTPN4-209ENST00000469511 NBPF26B4DH59 902 aa7.2□□□□□ -1.26
PTPN4-209ENST00000469511 EIF6P56537 245 aaKnown RBP7.2□□□□□ -1.26
PTPN4-209ENST00000469511 HIC1Q14526 733 aa7.2□□□□□ -1.26
PTPN4-209ENST00000469511 NBPF10Q6P3W6 841 aaKnown RBP7.2□□□□□ -1.26
PTPN4-209ENST00000469511 MORC1Q86VD1 984 aa7.2□□□□□ -1.26
PTPN4-209ENST00000469511 NUTM1Q86Y26 1132 aa7.2□□□□□ -1.26
PTPN4-209ENST00000469511 RTKN2Q8IZC4 609 aa7.2□□□□□ -1.26
PTPN4-209ENST00000469511 TTC5Q8N0Z6 440 aa7.2□□□□□ -1.26
PTPN4-209ENST00000469511 NBPF15Q8N660 670 aa7.2□□□□□ -1.26
PTPN4-209ENST00000469511 KRI1Q8N9T8 703 aaKnown RBP7.2□□□□□ -1.26
PTPN4-209ENST00000469511 RIMBP2O15034 1052 aa7.19□□□□□ -1.26
PTPN4-209ENST00000469511 LMOD1P29536 600 aaPredicted RBP7.19□□□□□ -1.26
PTPN4-209ENST00000469511 PTGDRQ13258 359 aa7.19□□□□□ -1.26
PTPN4-209ENST00000469511 TMEM132AQ24JP5 1023 aa7.19□□□□□ -1.26
PTPN4-209ENST00000469511 USP50Q70EL3 339 aaPredicted RBP7.19□□□□□ -1.26
PTPN4-209ENST00000469511 TRPM4Q8TD43 1214 aa7.19□□□□□ -1.26
PTPN4-209ENST00000469511 JDP2Q8WYK2 163 aa7.19□□□□□ -1.26
PTPN4-209ENST00000469511 PSMD1Q99460 953 aa7.19□□□□□ -1.26
PTPN4-209ENST00000469511 NIP7Q9Y221 180 aaKnown RBP eCLIP7.19□□□□□ -1.26
PTPN4-209ENST00000469511 PCDHGA10Q9Y5H3 936 aa7.19□□□□□ -1.26
PTPN4-209ENST00000469511 FAM155AB1AL88 458 aaPredicted RBP7.18□□□□□ -1.26
PTPN4-209ENST00000469511 CXCL9Q07325 125 aa7.18□□□□□ -1.26
PTPN4-209ENST00000469511 MAP2K5Q13163 448 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms