RNA–Protein interactions for RNA: ENST00000468253.1

NPHP4-206, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 781 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-206ENST00000468253 ATP6V0A2Q9Y487 856 aa25.36■■□□□ 1.65
NPHP4-206ENST00000468253 PPEF1O14829 653 aaPredicted RBP25.35■■□□□ 1.65
NPHP4-206ENST00000468253 C9orf131Q5VYM1 1079 aa25.35■■□□□ 1.65
NPHP4-206ENST00000468253 TTLL11Q8NHH1 800 aa25.35■■□□□ 1.65
NPHP4-206ENST00000468253 KIF16BQ96L93 1317 aa25.35■■□□□ 1.65
NPHP4-206ENST00000468253 COL11A2P13942 1736 aaPredicted RBP25.34■■□□□ 1.65
NPHP4-206ENST00000468253 GRM8O00222 908 aa25.34■■□□□ 1.65
NPHP4-206ENST00000468253 RPS8P62241 208 aaKnown RBP25.34■■□□□ 1.65
NPHP4-206ENST00000468253 TAOK3Q9H2K8 898 aa25.34■■□□□ 1.65
NPHP4-206ENST00000468253 C9orf78Q9NZ63 289 aaPredicted RBP25.34■■□□□ 1.65
NPHP4-206ENST00000468253 CSF1RP07333 972 aa25.33■■□□□ 1.65
NPHP4-206ENST00000468253 CTSWP56202 376 aa25.33■■□□□ 1.65
NPHP4-206ENST00000468253 PSMD1Q99460 953 aa25.33■■□□□ 1.65
NPHP4-206ENST00000468253 SLX4Q8IY92 1834 aa25.33■■□□□ 1.64
NPHP4-206ENST00000468253 TNRC6CQ9HCJ0 1690 aaKnown RBP25.32■■□□□ 1.64
NPHP4-206ENST00000468253 CCT4P50991 539 aaKnown RBP25.32■■□□□ 1.64
NPHP4-206ENST00000468253 FKBP4Q02790 459 aaKnown RBP eCLIP25.32■■□□□ 1.64
NPHP4-206ENST00000468253 UTYO14607 1347 aa25.32■■□□□ 1.64
NPHP4-206ENST00000468253 CHD4Q14839 1912 aa25.31■■□□□ 1.64
NPHP4-206ENST00000468253 RTL9Q8NET4 1388 aa25.31■■□□□ 1.64
NPHP4-206ENST00000468253 BCAR3O75815 825 aa25.3■■□□□ 1.64
NPHP4-206ENST00000468253 RASSF7Q02833 373 aa25.3■■□□□ 1.64
NPHP4-206ENST00000468253 OLFM4Q6UX06 510 aa25.3■■□□□ 1.64
NPHP4-206ENST00000468253 CELF1Q92879 486 aaKnown RBP25.3■■□□□ 1.64
NPHP4-206ENST00000468253 RNF181Q9P0P0 153 aa25.3■■□□□ 1.64
NPHP4-206ENST00000468253 ZC3H4Q9UPT8 1303 aaKnown RBP25.3■■□□□ 1.64
NPHP4-206ENST00000468253 PRELPP51888 382 aa25.29■■□□□ 1.64
NPHP4-206ENST00000468253 VPS33BQ9H267 617 aa25.29■■□□□ 1.64
NPHP4-206ENST00000468253 SEC31BQ9NQW1 1179 aa25.28■■□□□ 1.64
NPHP4-206ENST00000468253 FOXO4P98177 505 aa25.27■■□□□ 1.64
NPHP4-206ENST00000468253 ZNF784Q8NCA9 323 aaPredicted RBP25.27■■□□□ 1.64
NPHP4-206ENST00000468253 CDC5LQ99459 802 aaKnown RBP25.27■■□□□ 1.64
NPHP4-206ENST00000468253 RTFDC1Q9BY42 306 aaPredicted RBP25.27■■□□□ 1.64
NPHP4-206ENST00000468253 USP44Q9H0E7 712 aa25.27■■□□□ 1.64
NPHP4-206ENST00000468253 SNED1Q8TER0 1413 aa25.27■■□□□ 1.64
NPHP4-206ENST00000468253 ATF7IPQ6VMQ6 1270 aa25.26■■□□□ 1.63
NPHP4-206ENST00000468253 MPNDQ8N594 471 aa25.26■■□□□ 1.63
NPHP4-206ENST00000468253 GREM2Q9H772 168 aa25.26■■□□□ 1.63
NPHP4-206ENST00000468253 NBPF7P0C2Y1 421 aaPredicted RBP25.25■■□□□ 1.63
NPHP4-206ENST00000468253 INTS3Q68E01 1043 aaKnown RBP25.25■■□□□ 1.63
NPHP4-206ENST00000468253 ANKRD18AQ8IVF6 992 aa25.25■■□□□ 1.63
NPHP4-206ENST00000468253 SUPT20HQ8NEM7 779 aa25.25■■□□□ 1.63
NPHP4-206ENST00000468253 CCDC85AQ96PX6 553 aaPredicted RBP25.24■■□□□ 1.63
NPHP4-206ENST00000468253 BSDC1Q9NW68 430 aaPredicted RBP25.24■■□□□ 1.63
NPHP4-206ENST00000468253 HDAC5Q9UQL6 1122 aa25.24■■□□□ 1.63
NPHP4-206ENST00000468253 DDX60Q8IY21 1712 aaKnown RBP25.23■■□□□ 1.63
NPHP4-206ENST00000468253 ZKSCAN2Q63HK3 967 aa25.23■■□□□ 1.63
NPHP4-206ENST00000468253 DPP8Q6V1X1 898 aaPredicted RBP25.23■■□□□ 1.63
NPHP4-206ENST00000468253 ZNF277Q9NRM2 450 aaPredicted RBP25.23■■□□□ 1.63
NPHP4-206ENST00000468253 TRIM27P14373 513 aa25.22■■□□□ 1.63
NPHP4-206ENST00000468253 ITGA6P23229 1130 aa25.22■■□□□ 1.63
NPHP4-206ENST00000468253 IARSP41252 1262 aaKnown RBP25.22■■□□□ 1.63
NPHP4-206ENST00000468253 LMBR1LQ6UX01 489 aa25.22■■□□□ 1.63
NPHP4-206ENST00000468253 FRAT1Q92837 279 aaPredicted RBP25.22■■□□□ 1.63
NPHP4-206ENST00000468253 EPHA10Q5JZY3 1008 aa25.21■■□□□ 1.63
NPHP4-206ENST00000468253 KAZALD1Q96I82 304 aa25.21■■□□□ 1.63
NPHP4-206ENST00000468253 PODXL2Q9NZ53 605 aa25.21■■□□□ 1.63
NPHP4-206ENST00000468253 ANKRD18BA2A2Z9 1011 aa25.2■■□□□ 1.62
NPHP4-206ENST00000468253 IFIT5Q13325 482 aaKnown RBP25.2■■□□□ 1.62
NPHP4-206ENST00000468253 SUCLG2Q96I99 432 aa25.2■■□□□ 1.62
NPHP4-206ENST00000468253 FER1L6Q2WGJ9 1857 aa25.19■■□□□ 1.62
NPHP4-206ENST00000468253 IGHMBP2P38935 993 aaKnown RBP25.19■■□□□ 1.62
NPHP4-206ENST00000468253 RABL6Q3YEC7 729 aaPredicted RBP25.19■■□□□ 1.62
NPHP4-206ENST00000468253 NSFL1CQ9UNZ2 370 aaKnown RBP25.19■■□□□ 1.62
NPHP4-206ENST00000468253 CCDC57Q2TAC2 916 aa25.18■■□□□ 1.62
NPHP4-206ENST00000468253 FAM161AQ3B820 660 aa25.18■■□□□ 1.62
NPHP4-206ENST00000468253 DPY19L2Q6NUT2 758 aa25.18■■□□□ 1.62
NPHP4-206ENST00000468253 JDP2Q8WYK2 163 aa25.18■■□□□ 1.62
NPHP4-206ENST00000468253 LAMB2P55268 1798 aa25.18■■□□□ 1.62
NPHP4-206ENST00000468253 GLTPD2A6NH11 291 aa25.17■■□□□ 1.62
NPHP4-206ENST00000468253 GPSM2P81274 684 aa25.17■■□□□ 1.62
NPHP4-206ENST00000468253 SLC51AQ86UW1 340 aa25.17■■□□□ 1.62
NPHP4-206ENST00000468253 MINPP1Q9UNW1 487 aa25.17■■□□□ 1.62
NPHP4-206ENST00000468253 MPHOSPH8Q99549 860 aa25.16■■□□□ 1.62
NPHP4-206ENST00000468253 GPBP1L1Q9HC44 474 aaPredicted RBP25.16■■□□□ 1.62
NPHP4-206ENST00000468253 RCAN3Q9UKA8 241 aa25.16■■□□□ 1.62
NPHP4-206ENST00000468253 KDM2BQ8NHM5 1336 aa25.15■■□□□ 1.62
NPHP4-206ENST00000468253 FZD9O00144 591 aa25.15■■□□□ 1.62
NPHP4-206ENST00000468253 GNAI3P08754 354 aa25.15■■□□□ 1.62
NPHP4-206ENST00000468253 UBTFL1P0CB47 393 aaPredicted RBP25.15■■□□□ 1.62
NPHP4-206ENST00000468253 KIAA2012Q0VF49 1180 aa25.15■■□□□ 1.62
NPHP4-206ENST00000468253 LARGE2Q8N3Y3 721 aa25.15■■□□□ 1.62
NPHP4-206ENST00000468253 BICC1Q9H694 974 aaKnown RBP25.15■■□□□ 1.62
NPHP4-206ENST00000468253 SBF1O95248 1867 aa25.15■■□□□ 1.62
NPHP4-206ENST00000468253 MS4A1P11836 297 aa25.14■■□□□ 1.62
NPHP4-206ENST00000468253 TBC1D16Q8TBP0 767 aa25.14■■□□□ 1.62
NPHP4-206ENST00000468253 EYA3Q99504 573 aa25.14■■□□□ 1.62
NPHP4-206ENST00000468253 ANKIB1Q9P2G1 1089 aa25.14■■□□□ 1.62
NPHP4-206ENST00000468253 POLLQ9UGP5 575 aa25.14■■□□□ 1.62
NPHP4-206ENST00000468253 CHMP3Q9Y3E7 222 aa25.14■■□□□ 1.62
NPHP4-206ENST00000468253 XDHP47989 1333 aa25.13■■□□□ 1.61
NPHP4-206ENST00000468253 PPIP5K2O43314 1243 aa25.13■■□□□ 1.61
NPHP4-206ENST00000468253 WASHC4Q2M389 1173 aa25.13■■□□□ 1.61
NPHP4-206ENST00000468253 DZIP1LQ8IYY4 767 aaKnown RBP25.13■■□□□ 1.61
NPHP4-206ENST00000468253 ANKRD44Q8N8A2 993 aa25.13■■□□□ 1.61
NPHP4-206ENST00000468253 ANKRD2Q9GZV1 360 aa25.13■■□□□ 1.61
NPHP4-206ENST00000468253 GGA1Q9UJY5 639 aa25.13■■□□□ 1.61
NPHP4-206ENST00000468253 C6orf229H3BNL8 230 aa25.12■■□□□ 1.61
NPHP4-206ENST00000468253 ATP2B4P23634 1241 aa25.12■■□□□ 1.61
NPHP4-206ENST00000468253 CLUAP1Q96AJ1 413 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms