RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 ANO8Q9HCE9 1232 aaPredicted RBP7.51□□□□□ -1.21
USP39-213ENST00000467885 IBTKQ9P2D0 1353 aaPredicted RBP7.5□□□□□ -1.21
USP39-213ENST00000467885 GRM8O00222 908 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 ZPR1O75312 459 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 PHF14O94880 888 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 NEFLP07196 543 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 GNAI3P08754 354 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 HOXB3P14651 431 aaPredicted RBP7.5□□□□□ -1.21
USP39-213ENST00000467885 GPTP24298 496 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 ATP8B2P98198 1209 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 NEXNQ0ZGT2 675 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 HSP90AB3PQ58FF7 597 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 EPHA10Q5JZY3 1008 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 SLC10A5Q5PT55 438 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 NLGN1Q8N2Q7 840 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 PDGFDQ9GZP0 370 aaPredicted RBP7.5□□□□□ -1.21
USP39-213ENST00000467885 CWC25Q9NXE8 425 aaPredicted RBP7.5□□□□□ -1.21
USP39-213ENST00000467885 PPP4R2Q9NY27 417 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 BOLA1Q9Y3E2 137 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 BTAF1O14981 1849 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 PNPLA7Q6ZV29 1317 aa7.5□□□□□ -1.21
USP39-213ENST00000467885 USP42Q9H9J4 1324 aaKnown RBP7.5□□□□□ -1.21
USP39-213ENST00000467885 ZNF831Q5JPB2 1677 aa7.49□□□□□ -1.21
USP39-213ENST00000467885 PCCAP05165 728 aaPredicted RBP7.49□□□□□ -1.21
USP39-213ENST00000467885 CSF1RP07333 972 aa7.49□□□□□ -1.21
USP39-213ENST00000467885 FOXO4P98177 505 aa7.49□□□□□ -1.21
USP39-213ENST00000467885 NFIXQ14938 502 aa7.49□□□□□ -1.21
USP39-213ENST00000467885 RPAP2Q8IXW5 612 aaPredicted RBP7.49□□□□□ -1.21
USP39-213ENST00000467885 ZBTB38Q8NAP3 1195 aaPredicted RBP7.49□□□□□ -1.21
USP39-213ENST00000467885 FAM89AQ96GI7 184 aa7.49□□□□□ -1.21
USP39-213ENST00000467885 CHMP4BQ9H444 224 aaKnown RBP7.49□□□□□ -1.21
USP39-213ENST00000467885 STK32BQ9NY57 414 aa7.49□□□□□ -1.21
USP39-213ENST00000467885 C9orf78Q9NZ63 289 aaPredicted RBP7.49□□□□□ -1.21
USP39-213ENST00000467885 NIP7Q9Y221 180 aaKnown RBP eCLIP7.49□□□□□ -1.21
USP39-213ENST00000467885 VIRMAQ69YN4 1812 aaKnown RBP7.49□□□□□ -1.21
USP39-213ENST00000467885 ATP10DQ9P241 1426 aa7.49□□□□□ -1.21
USP39-213ENST00000467885 UBN2Q6ZU65 1347 aa7.49□□□□□ -1.21
USP39-213ENST00000467885 COL15A1P39059 1388 aa7.48□□□□□ -1.21
USP39-213ENST00000467885 MYH14Q7Z406 1995 aaKnown RBP7.48□□□□□ -1.21
USP39-213ENST00000467885 GNAI2P04899 355 aa7.48□□□□□ -1.21
USP39-213ENST00000467885 PARP10Q53GL7 1025 aa7.48□□□□□ -1.21
USP39-213ENST00000467885 BICDL1Q6ZP65 573 aa7.48□□□□□ -1.21
USP39-213ENST00000467885 SPOCK2Q92563 424 aa7.48□□□□□ -1.21
USP39-213ENST00000467885 SUCLG2Q96I99 432 aa7.48□□□□□ -1.21
USP39-213ENST00000467885 SETDB2Q96T68 719 aa7.48□□□□□ -1.21
USP39-213ENST00000467885 UTP14AQ9BVJ6 771 aaKnown RBP7.48□□□□□ -1.21
USP39-213ENST00000467885 C5P01031 1676 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 TJP1Q07157 1748 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 NTSR2O95665 410 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 SERPINB2P05120 415 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 UBTFL1P0CB47 393 aaPredicted RBP7.47□□□□□ -1.21
USP39-213ENST00000467885 PRKCSHP14314 528 aaPredicted RBP7.47□□□□□ -1.21
USP39-213ENST00000467885 MTX1Q13505 466 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 RTL5Q5HYW3 569 aaPredicted RBP7.47□□□□□ -1.21
USP39-213ENST00000467885 CEP85Q6P2H3 762 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 TPTE2Q6XPS3 522 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 UBE3BQ7Z3V4 1068 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 PPP1R42Q7Z4L9 355 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 IFNLR1Q8IU57 520 aaPredicted RBP7.47□□□□□ -1.21
USP39-213ENST00000467885 ANKRD44Q8N8A2 993 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 SLC16A10Q8TF71 515 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 PLA2G12BQ9BX93 195 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 C1orf115Q9H7X2 142 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 TRMT112Q9UI30 125 aaKnown RBP7.47□□□□□ -1.21
USP39-213ENST00000467885 CIZ1Q9ULV3 898 aaPredicted RBP7.47□□□□□ -1.21
USP39-213ENST00000467885 ZNF652Q9Y2D9 606 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 LRRFIP2Q9Y608 721 aaKnown RBP7.47□□□□□ -1.21
USP39-213ENST00000467885 LY75O60449 1722 aa7.47□□□□□ -1.21
USP39-213ENST00000467885 PNMA6EA0A0J9YXQ4 647 aa7.46□□□□□ -1.22
USP39-213ENST00000467885 FAM177BA6PVY3 158 aa7.46□□□□□ -1.22
USP39-213ENST00000467885 G3V3G9 751 aa7.46□□□□□ -1.22
USP39-213ENST00000467885 IRS4O14654 1257 aaPredicted RBP7.46□□□□□ -1.22
USP39-213ENST00000467885 RFX5P48382 616 aaPredicted RBP7.46□□□□□ -1.22
USP39-213ENST00000467885 DDR1Q08345 913 aa7.46□□□□□ -1.22
USP39-213ENST00000467885 HDAC1Q13547 482 aaPredicted RBP7.46□□□□□ -1.22
USP39-213ENST00000467885 RABL6Q3YEC7 729 aaPredicted RBP7.46□□□□□ -1.22
USP39-213ENST00000467885 ERFEQ4G0M1 354 aa7.46□□□□□ -1.22
USP39-213ENST00000467885 B4GALNT3Q6L9W6 998 aa7.46□□□□□ -1.22
USP39-213ENST00000467885 TTLL11Q8NHH1 800 aa7.46□□□□□ -1.22
USP39-213ENST00000467885 SSH3Q8TE77 659 aa7.46□□□□□ -1.22
USP39-213ENST00000467885 BICC1Q9H694 974 aaKnown RBP7.46□□□□□ -1.22
USP39-213ENST00000467885 DCTPP1Q9H773 170 aa7.46□□□□□ -1.22
USP39-213ENST00000467885 HDAC5Q9UQL6 1122 aa7.46□□□□□ -1.22
USP39-213ENST00000467885 CICQ96RK0 1608 aaPredicted RBP7.45□□□□□ -1.22
USP39-213ENST00000467885 POLRMTO00411 1230 aaKnown RBP7.45□□□□□ -1.22
USP39-213ENST00000467885 PDE8AO60658 829 aa7.45□□□□□ -1.22
USP39-213ENST00000467885 HCLS1P14317 486 aaPredicted RBP7.45□□□□□ -1.22
USP39-213ENST00000467885 R3HDM1Q15032 1099 aaKnown RBP7.45□□□□□ -1.22
USP39-213ENST00000467885 SF3B3Q15393 1217 aaKnown RBP7.45□□□□□ -1.22
USP39-213ENST00000467885 LMBR1LQ6UX01 489 aa7.45□□□□□ -1.22
USP39-213ENST00000467885 NUTM1Q86Y26 1132 aa7.45□□□□□ -1.22
USP39-213ENST00000467885 CCDC24Q8N4L8 307 aa7.45□□□□□ -1.22
USP39-213ENST00000467885 RWDD1Q9H446 243 aaPredicted RBP7.45□□□□□ -1.22
USP39-213ENST00000467885 CDHR2Q9BYE9 1310 aa7.45□□□□□ -1.22
USP39-213ENST00000467885 RREB1Q92766 1687 aa7.44□□□□□ -1.22
USP39-213ENST00000467885 C4BP0C0L5 1744 aa7.44□□□□□ -1.22
USP39-213ENST00000467885 KLRG2A4D1S0 409 aaPredicted RBP7.44□□□□□ -1.22
USP39-213ENST00000467885 HOXB1P14653 301 aaPredicted RBP7.44□□□□□ -1.22
USP39-213ENST00000467885 PTPN12Q05209 780 aaKnown RBP7.44□□□□□ -1.22
USP39-213ENST00000467885 PRR5LQ6MZQ0 368 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms