RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 PLBD2Q8NHP8 589 aa22.75■■□□□ 1.23
COL7A1-205ENST00000465238 CLEC11AQ9Y240 323 aa22.75■■□□□ 1.23
COL7A1-205ENST00000465238 ITGBL1O95965 494 aaPredicted RBP22.74■■□□□ 1.23
COL7A1-205ENST00000465238 HCLS1P14317 486 aaPredicted RBP22.74■■□□□ 1.23
COL7A1-205ENST00000465238 SLFN5Q08AF3 891 aa22.74■■□□□ 1.23
COL7A1-205ENST00000465238 ANKRD13DQ6ZTN6 518 aa22.74■■□□□ 1.23
COL7A1-205ENST00000465238 SLC51AQ86UW1 340 aa22.74■■□□□ 1.23
COL7A1-205ENST00000465238 GJA3Q9Y6H8 435 aa22.74■■□□□ 1.23
COL7A1-205ENST00000465238 CCDC30Q5VVM6 783 aa22.73■■□□□ 1.23
COL7A1-205ENST00000465238 DDX46Q7L014 1031 aaKnown RBP22.73■■□□□ 1.23
COL7A1-205ENST00000465238 NIM1KQ8IY84 436 aa22.73■■□□□ 1.23
COL7A1-205ENST00000465238 SUPT20HQ8NEM7 779 aa22.73■■□□□ 1.23
COL7A1-205ENST00000465238 HYPKQ9NX55 129 aa22.73■■□□□ 1.23
COL7A1-205ENST00000465238 PPIP5K2O43314 1243 aa22.72■■□□□ 1.23
COL7A1-205ENST00000465238 LMOD1P29536 600 aaPredicted RBP22.72■■□□□ 1.23
COL7A1-205ENST00000465238 SP8Q8IXZ3 490 aa22.72■■□□□ 1.23
COL7A1-205ENST00000465238 CDCA7LQ96GN5 454 aa22.72■■□□□ 1.23
COL7A1-205ENST00000465238 RTFDC1Q9BY42 306 aaPredicted RBP22.72■■□□□ 1.23
COL7A1-205ENST00000465238 HSPA1AP0DMV8 641 aaKnown RBP22.71■■□□□ 1.23
COL7A1-205ENST00000465238 HSPA1BP0DMV9 641 aaKnown RBP22.71■■□□□ 1.23
COL7A1-205ENST00000465238 MKRN1Q9UHC7 482 aaKnown RBP22.71■■□□□ 1.23
COL7A1-205ENST00000465238 TMEM88BA6NKF7 163 aa22.7■■□□□ 1.22
COL7A1-205ENST00000465238 GRAPQ13588 217 aa22.7■■□□□ 1.22
COL7A1-205ENST00000465238 AOC3Q16853 763 aa22.7■■□□□ 1.22
COL7A1-205ENST00000465238 DPP8Q6V1X1 898 aaPredicted RBP22.7■■□□□ 1.22
COL7A1-205ENST00000465238 GRAPLQ8TC17 118 aaPredicted RBP22.7■■□□□ 1.22
COL7A1-205ENST00000465238 ISCA1Q9BUE6 129 aa22.7■■□□□ 1.22
COL7A1-205ENST00000465238 CNTNAP1P78357 1384 aa22.69■■□□□ 1.22
COL7A1-205ENST00000465238 SCNN1DP51172 638 aa22.69■■□□□ 1.22
COL7A1-205ENST00000465238 COL13A1Q5TAT6 717 aaPredicted RBP22.69■■□□□ 1.22
COL7A1-205ENST00000465238 TMC4Q7Z404 712 aa22.69■■□□□ 1.22
COL7A1-205ENST00000465238 CNTROBQ8N137 903 aa22.69■■□□□ 1.22
COL7A1-205ENST00000465238 MPNDQ8N594 471 aa22.69■■□□□ 1.22
COL7A1-205ENST00000465238 STK31Q9BXU1 1019 aa22.69■■□□□ 1.22
COL7A1-205ENST00000465238 LTBP1Q14766 1721 aa22.68■■□□□ 1.22
COL7A1-205ENST00000465238 DDX60Q8IY21 1712 aaKnown RBP22.68■■□□□ 1.22
COL7A1-205ENST00000465238 VAMP4O75379 141 aa22.68■■□□□ 1.22
COL7A1-205ENST00000465238 MAP1SQ66K74 1059 aaPredicted RBP22.68■■□□□ 1.22
COL7A1-205ENST00000465238 ZNRF3Q9ULT6 936 aa22.68■■□□□ 1.22
COL7A1-205ENST00000465238 TAF1P21675 1872 aa22.67■■□□□ 1.22
COL7A1-205ENST00000465238 TRIM28Q13263 835 aaKnown RBP22.67■■□□□ 1.22
COL7A1-205ENST00000465238 ATP5J2-PTCD1G3V325 749 aa22.66■■□□□ 1.22
COL7A1-205ENST00000465238 EPS15P42566 896 aa22.66■■□□□ 1.22
COL7A1-205ENST00000465238 TRMT2AQ8IZ69 625 aaKnown RBP22.66■■□□□ 1.22
COL7A1-205ENST00000465238 FAM89AQ96GI7 184 aa22.66■■□□□ 1.22
COL7A1-205ENST00000465238 KIAA2012Q0VF49 1180 aa22.65■■□□□ 1.22
COL7A1-205ENST00000465238 SF3B3Q15393 1217 aaKnown RBP22.65■■□□□ 1.22
COL7A1-205ENST00000465238 USP50Q70EL3 339 aaPredicted RBP22.65■■□□□ 1.22
COL7A1-205ENST00000465238 ZNF428Q96B54 188 aa22.65■■□□□ 1.22
COL7A1-205ENST00000465238 LRRC37AA6NMS7 1700 aa22.65■■□□□ 1.22
COL7A1-205ENST00000465238 ZBED9Q6R2W3 1325 aa22.64■■□□□ 1.22
COL7A1-205ENST00000465238 CACNA1FO60840 1977 aa22.64■■□□□ 1.21
COL7A1-205ENST00000465238 CXCL9Q07325 125 aa22.64■■□□□ 1.21
COL7A1-205ENST00000465238 RIC3Q7Z5B4 369 aa22.64■■□□□ 1.21
COL7A1-205ENST00000465238 SLC4A2P04920 1241 aa22.63■■□□□ 1.21
COL7A1-205ENST00000465238 GPRC5DQ9NZD1 345 aa22.63■■□□□ 1.21
COL7A1-205ENST00000465238 PHAXQ9H814 394 aaKnown RBP22.62■■□□□ 1.21
COL7A1-205ENST00000465238 ADARB2Q9NS39 739 aaKnown RBP22.62■■□□□ 1.21
COL7A1-205ENST00000465238 IRS4O14654 1257 aaPredicted RBP22.61■■□□□ 1.21
COL7A1-205ENST00000465238 CIAPIN1Q6FI81 312 aa22.61■■□□□ 1.21
COL7A1-205ENST00000465238 DUOX1Q9NRD9 1551 aa22.61■■□□□ 1.21
COL7A1-205ENST00000465238 CDHR2Q9BYE9 1310 aa22.6■■□□□ 1.21
COL7A1-205ENST00000465238 RASSF10A6NK89 507 aa22.6■■□□□ 1.21
COL7A1-205ENST00000465238 HSP90B1P14625 803 aaKnown RBP22.6■■□□□ 1.21
COL7A1-205ENST00000465238 VEGFBP49765 207 aa22.6■■□□□ 1.21
COL7A1-205ENST00000465238 TNIP1Q15025 636 aa22.6■■□□□ 1.21
COL7A1-205ENST00000465238 RTL5Q5HYW3 569 aaPredicted RBP22.6■■□□□ 1.21
COL7A1-205ENST00000465238 TNS4Q8IZW8 715 aa22.6■■□□□ 1.21
COL7A1-205ENST00000465238 CELF1Q92879 486 aaKnown RBP22.6■■□□□ 1.21
COL7A1-205ENST00000465238 DDX58O95786 925 aaKnown RBP22.59■■□□□ 1.21
COL7A1-205ENST00000465238 GMPSP49915 693 aaPredicted RBP22.59■■□□□ 1.21
COL7A1-205ENST00000465238 ZBTB38Q8NAP3 1195 aaPredicted RBP22.59■■□□□ 1.21
COL7A1-205ENST00000465238 DEFB115Q30KQ5 88 aa22.58■■□□□ 1.21
COL7A1-205ENST00000465238 NSFL1CQ9UNZ2 370 aaKnown RBP22.58■■□□□ 1.21
COL7A1-205ENST00000465238 RAD17O75943 681 aa22.57■■□□□ 1.2
COL7A1-205ENST00000465238 WASHC4Q2M389 1173 aa22.57■■□□□ 1.2
COL7A1-205ENST00000465238 CCDC191Q8NCU4 936 aa22.57■■□□□ 1.2
COL7A1-205ENST00000465238 MYD88Q99836 296 aa22.57■■□□□ 1.2
COL7A1-205ENST00000465238 BCL2L13Q9BXK5 485 aa22.57■■□□□ 1.2
COL7A1-205ENST00000465238 ABT1Q9ULW3 272 aaKnown RBP22.57■■□□□ 1.2
COL7A1-205ENST00000465238 TRPM7Q96QT4 1865 aa22.57■■□□□ 1.2
COL7A1-205ENST00000465238 CT47B1P0C2W7 299 aaPredicted RBP22.56■■□□□ 1.2
COL7A1-205ENST00000465238 RPS8P62241 208 aaKnown RBP22.56■■□□□ 1.2
COL7A1-205ENST00000465238 G2E3Q7L622 706 aa22.56■■□□□ 1.2
COL7A1-205ENST00000465238 YDJCA8MPS7 323 aa22.55■■□□□ 1.2
COL7A1-205ENST00000465238 C6orf229H3BNL8 230 aa22.54■■□□□ 1.2
COL7A1-205ENST00000465238 PCCAP05165 728 aaPredicted RBP22.54■■□□□ 1.2
COL7A1-205ENST00000465238 FLIIQ13045 1269 aa22.54■■□□□ 1.2
COL7A1-205ENST00000465238 AIDAQ96BJ3 306 aa22.54■■□□□ 1.2
COL7A1-205ENST00000465238 METTL22Q9BUU2 404 aaPredicted RBP22.54■■□□□ 1.2
COL7A1-205ENST00000465238 CWC25Q9NXE8 425 aaPredicted RBP22.54■■□□□ 1.2
COL7A1-205ENST00000465238 COL4A1P02462 1669 aa22.54■■□□□ 1.2
COL7A1-205ENST00000465238 FOXN1O15353 648 aa22.53■■□□□ 1.2
COL7A1-205ENST00000465238 GPSM2P81274 684 aa22.53■■□□□ 1.2
COL7A1-205ENST00000465238 KSR2Q6VAB6 950 aa22.53■■□□□ 1.2
COL7A1-205ENST00000465238 ZC3H15Q8WU90 426 aaKnown RBP22.53■■□□□ 1.2
COL7A1-205ENST00000465238 EYA3Q99504 573 aa22.53■■□□□ 1.2
COL7A1-205ENST00000465238 POLLQ9UGP5 575 aa22.53■■□□□ 1.2
COL7A1-205ENST00000465238 PGAP2Q9UHJ9 254 aa22.53■■□□□ 1.2
COL7A1-205ENST00000465238 TRAF5O00463 557 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms