RNA–Protein interactions for RNA: ENST00000463315.1

SEMA3D-203, Transcript of semaphorin 3D, humanhuman

TSL 2

Gene SEMA3D, Length 1,257 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-203ENST00000463315 DDX46Q7L014 1031 aaKnown RBP17.4■□□□□ 0.38
SEMA3D-203ENST00000463315 TMC4Q7Z404 712 aa17.4■□□□□ 0.38
SEMA3D-203ENST00000463315 KIF16BQ96L93 1317 aa17.4■□□□□ 0.38
SEMA3D-203ENST00000463315 LAMB2P55268 1798 aa17.39■□□□□ 0.37
SEMA3D-203ENST00000463315 F6X3S4 739 aa17.39■□□□□ 0.37
SEMA3D-203ENST00000463315 C21orf2O43822 256 aa17.39■□□□□ 0.37
SEMA3D-203ENST00000463315 YY1P25490 414 aa17.39■□□□□ 0.37
SEMA3D-203ENST00000463315 C3orf67Q6ZVT6 689 aa17.39■□□□□ 0.37
SEMA3D-203ENST00000463315 RTKN2Q8IZC4 609 aa17.39■□□□□ 0.37
SEMA3D-203ENST00000463315 PLA2G12BQ9BX93 195 aa17.39■□□□□ 0.37
SEMA3D-203ENST00000463315 SRCIN1Q9C0H9 1055 aa17.39■□□□□ 0.37
SEMA3D-203ENST00000463315 DDX60Q8IY21 1712 aaKnown RBP17.38■□□□□ 0.37
SEMA3D-203ENST00000463315 SLX4Q8IY92 1834 aa17.38■□□□□ 0.37
SEMA3D-203ENST00000463315 CCDC93Q567U6 631 aa17.38■□□□□ 0.37
SEMA3D-203ENST00000463315 API5Q9BZZ5 524 aaKnown RBP17.38■□□□□ 0.37
SEMA3D-203ENST00000463315 IPO8O15397 1037 aaKnown RBP17.37■□□□□ 0.37
SEMA3D-203ENST00000463315 GRAPQ13588 217 aa17.37■□□□□ 0.37
SEMA3D-203ENST00000463315 CCDC152Q4G0S7 254 aa17.37■□□□□ 0.37
SEMA3D-203ENST00000463315 GRAPLQ8TC17 118 aaPredicted RBP17.37■□□□□ 0.37
SEMA3D-203ENST00000463315 BCL2L13Q9BXK5 485 aa17.37■□□□□ 0.37
SEMA3D-203ENST00000463315 TMX4Q9H1E5 349 aaPredicted RBP17.37■□□□□ 0.37
SEMA3D-203ENST00000463315 LMNB1P20700 586 aa17.36■□□□□ 0.37
SEMA3D-203ENST00000463315 CASP7P55210 303 aa17.36■□□□□ 0.37
SEMA3D-203ENST00000463315 RTL5Q5HYW3 569 aaPredicted RBP17.36■□□□□ 0.37
SEMA3D-203ENST00000463315 UBE3BQ7Z3V4 1068 aa17.36■□□□□ 0.37
SEMA3D-203ENST00000463315 ABCC4O15439 1325 aa17.36■□□□□ 0.37
SEMA3D-203ENST00000463315 ZC3H4Q9UPT8 1303 aaKnown RBP17.36■□□□□ 0.37
SEMA3D-203ENST00000463315 RTL9Q8NET4 1388 aa17.36■□□□□ 0.37
SEMA3D-203ENST00000463315 GRM8O00222 908 aa17.35■□□□□ 0.37
SEMA3D-203ENST00000463315 PPEF1O14829 653 aaPredicted RBP17.35■□□□□ 0.37
SEMA3D-203ENST00000463315 CTSWP56202 376 aa17.35■□□□□ 0.37
SEMA3D-203ENST00000463315 SLC4A10Q6U841 1118 aa17.35■□□□□ 0.37
SEMA3D-203ENST00000463315 SP8Q8IXZ3 490 aa17.35■□□□□ 0.37
SEMA3D-203ENST00000463315 PSMD1Q99460 953 aa17.35■□□□□ 0.37
SEMA3D-203ENST00000463315 TAOK3Q9H2K8 898 aa17.35■□□□□ 0.37
SEMA3D-203ENST00000463315 NOB1Q9ULX3 412 aaKnown RBP17.35■□□□□ 0.37
SEMA3D-203ENST00000463315 ATP6V0A2Q9Y487 856 aa17.35■□□□□ 0.37
SEMA3D-203ENST00000463315 UTYO14607 1347 aa17.35■□□□□ 0.37
SEMA3D-203ENST00000463315 NFKBIEO00221 500 aa17.34■□□□□ 0.37
SEMA3D-203ENST00000463315 CCT4P50991 539 aaKnown RBP17.34■□□□□ 0.37
SEMA3D-203ENST00000463315 FER1L6Q2WGJ9 1857 aa17.34■□□□□ 0.37
SEMA3D-203ENST00000463315 TTLL11Q8NHH1 800 aa17.34■□□□□ 0.37
SEMA3D-203ENST00000463315 SNED1Q8TER0 1413 aa17.34■□□□□ 0.37
SEMA3D-203ENST00000463315 C9orf78Q9NZ63 289 aaPredicted RBP17.34■□□□□ 0.37
SEMA3D-203ENST00000463315 CSF1RP07333 972 aa17.33■□□□□ 0.36
SEMA3D-203ENST00000463315 RPS8P62241 208 aaKnown RBP17.33■□□□□ 0.36
SEMA3D-203ENST00000463315 FKBP4Q02790 459 aaKnown RBP eCLIP17.33■□□□□ 0.36
SEMA3D-203ENST00000463315 VPS33BQ9H267 617 aa17.33■□□□□ 0.36
SEMA3D-203ENST00000463315 C9orf131Q5VYM1 1079 aa17.31■□□□□ 0.36
SEMA3D-203ENST00000463315 JARID2Q92833 1246 aaPredicted RBP17.31■□□□□ 0.36
SEMA3D-203ENST00000463315 CDC5LQ99459 802 aaKnown RBP17.31■□□□□ 0.36
SEMA3D-203ENST00000463315 HDAC5Q9UQL6 1122 aa17.31■□□□□ 0.36
SEMA3D-203ENST00000463315 CACNA1SQ13698 1873 aa17.31■□□□□ 0.36
SEMA3D-203ENST00000463315 RASSF7Q02833 373 aa17.3■□□□□ 0.36
SEMA3D-203ENST00000463315 ATF7IPQ6VMQ6 1270 aa17.3■□□□□ 0.36
SEMA3D-203ENST00000463315 SUPT20HQ8NEM7 779 aa17.3■□□□□ 0.36
SEMA3D-203ENST00000463315 RTFDC1Q9BY42 306 aaPredicted RBP17.3■□□□□ 0.36
SEMA3D-203ENST00000463315 RNF181Q9P0P0 153 aa17.3■□□□□ 0.36
SEMA3D-203ENST00000463315 SBF1O95248 1867 aa17.3■□□□□ 0.36
SEMA3D-203ENST00000463315 MYH3P11055 1940 aa17.29■□□□□ 0.36
SEMA3D-203ENST00000463315 BCAR3O75815 825 aa17.29■□□□□ 0.36
SEMA3D-203ENST00000463315 INTS3Q68E01 1043 aaKnown RBP17.29■□□□□ 0.36
SEMA3D-203ENST00000463315 CELF1Q92879 486 aaKnown RBP17.29■□□□□ 0.36
SEMA3D-203ENST00000463315 USP44Q9H0E7 712 aa17.29■□□□□ 0.36
SEMA3D-203ENST00000463315 FOXO4P98177 505 aa17.28■□□□□ 0.36
SEMA3D-203ENST00000463315 ZKSCAN2Q63HK3 967 aa17.28■□□□□ 0.36
SEMA3D-203ENST00000463315 ANKRD18AQ8IVF6 992 aa17.28■□□□□ 0.36
SEMA3D-203ENST00000463315 LRRC37AA6NMS7 1700 aa17.27■□□□□ 0.36
SEMA3D-203ENST00000463315 SPDYE2BA6NHP3 402 aa17.27■□□□□ 0.36
SEMA3D-203ENST00000463315 NBPF7P0C2Y1 421 aaPredicted RBP17.27■□□□□ 0.36
SEMA3D-203ENST00000463315 SPDYE6P0CI01 402 aa17.27■□□□□ 0.36
SEMA3D-203ENST00000463315 TRIM27P14373 513 aa17.27■□□□□ 0.36
SEMA3D-203ENST00000463315 PRELPP51888 382 aa17.27■□□□□ 0.36
SEMA3D-203ENST00000463315 SPDYE2Q495Y8 402 aa17.27■□□□□ 0.36
SEMA3D-203ENST00000463315 MPNDQ8N594 471 aa17.27■□□□□ 0.36
SEMA3D-203ENST00000463315 ZNF784Q8NCA9 323 aaPredicted RBP17.27■□□□□ 0.36
SEMA3D-203ENST00000463315 GREM2Q9H772 168 aa17.27■□□□□ 0.36
SEMA3D-203ENST00000463315 SEC31BQ9NQW1 1179 aa17.27■□□□□ 0.36
SEMA3D-203ENST00000463315 BSDC1Q9NW68 430 aaPredicted RBP17.27■□□□□ 0.36
SEMA3D-203ENST00000463315 PODXL2Q9NZ53 605 aa17.27■□□□□ 0.36
SEMA3D-203ENST00000463315 OLFM4Q6UX06 510 aa17.26■□□□□ 0.35
SEMA3D-203ENST00000463315 DPP8Q6V1X1 898 aaPredicted RBP17.26■□□□□ 0.35
SEMA3D-203ENST00000463315 ITGA6P23229 1130 aa17.25■□□□□ 0.35
SEMA3D-203ENST00000463315 IGHMBP2P38935 993 aaKnown RBP17.25■□□□□ 0.35
SEMA3D-203ENST00000463315 IARSP41252 1262 aaKnown RBP17.25■□□□□ 0.35
SEMA3D-203ENST00000463315 IFIT5Q13325 482 aaKnown RBP17.25■□□□□ 0.35
SEMA3D-203ENST00000463315 RABL6Q3YEC7 729 aaPredicted RBP17.25■□□□□ 0.35
SEMA3D-203ENST00000463315 FRAT1Q92837 279 aaPredicted RBP17.25■□□□□ 0.35
SEMA3D-203ENST00000463315 DICER1Q9UPY3 1922 aaKnown RBP17.24■□□□□ 0.35
SEMA3D-203ENST00000463315 ANKRD18BA2A2Z9 1011 aa17.24■□□□□ 0.35
SEMA3D-203ENST00000463315 POTEHQ6S545 545 aa17.24■□□□□ 0.35
SEMA3D-203ENST00000463315 LMBR1LQ6UX01 489 aa17.24■□□□□ 0.35
SEMA3D-203ENST00000463315 REM2Q8IYK8 340 aaPredicted RBP17.24■□□□□ 0.35
SEMA3D-203ENST00000463315 KAZALD1Q96I82 304 aa17.24■□□□□ 0.35
SEMA3D-203ENST00000463315 KDM2BQ8NHM5 1336 aa17.23■□□□□ 0.35
SEMA3D-203ENST00000463315 GNAI3P08754 354 aa17.23■□□□□ 0.35
SEMA3D-203ENST00000463315 MS4A1P11836 297 aa17.23■□□□□ 0.35
SEMA3D-203ENST00000463315 CCDC57Q2TAC2 916 aa17.23■□□□□ 0.35
SEMA3D-203ENST00000463315 FAM161AQ3B820 660 aa17.23■□□□□ 0.35
SEMA3D-203ENST00000463315 EPHA10Q5JZY3 1008 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms