RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 TRIM28Q13263 835 aaKnown RBP17.96■□□□□ 0.47
USP4-206ENST00000461553 NCBP3Q53F19 620 aaKnown RBP17.96■□□□□ 0.47
USP4-206ENST00000461553 RTL5Q5HYW3 569 aaPredicted RBP17.96■□□□□ 0.47
USP4-206ENST00000461553 DPP8Q6V1X1 898 aaPredicted RBP17.96■□□□□ 0.47
USP4-206ENST00000461553 SP8Q8IXZ3 490 aa17.96■□□□□ 0.47
USP4-206ENST00000461553 TSPYL6Q8N831 410 aa17.96■□□□□ 0.47
USP4-206ENST00000461553 KLRG1Q96E93 195 aa17.96■□□□□ 0.47
USP4-206ENST00000461553 MYD88Q99836 296 aa17.96■□□□□ 0.47
USP4-206ENST00000461553 IRS4O14654 1257 aaPredicted RBP17.95■□□□□ 0.46
USP4-206ENST00000461553 POTEIP0CG38 1075 aa17.95■□□□□ 0.46
USP4-206ENST00000461553 POTEJP0CG39 1038 aa17.95■□□□□ 0.46
USP4-206ENST00000461553 HSP90B1P14625 803 aaKnown RBP17.95■□□□□ 0.46
USP4-206ENST00000461553 AOC3Q16853 763 aa17.95■□□□□ 0.46
USP4-206ENST00000461553 TWISTNBQ3B726 338 aaPredicted RBP17.95■□□□□ 0.46
USP4-206ENST00000461553 EAPPQ56P03 285 aaPredicted RBP17.95■□□□□ 0.46
USP4-206ENST00000461553 MPNDQ8N594 471 aa17.95■□□□□ 0.46
USP4-206ENST00000461553 DNAJC5GQ8N7S2 189 aa17.95■□□□□ 0.46
USP4-206ENST00000461553 VPS33BQ9H267 617 aa17.95■□□□□ 0.46
USP4-206ENST00000461553 GJA3Q9Y6H8 435 aa17.95■□□□□ 0.46
USP4-206ENST00000461553 COL4A1P02462 1669 aa17.95■□□□□ 0.46
USP4-206ENST00000461553 PCNTO95613 3336 aa17.95■□□□□ 0.46
USP4-206ENST00000461553 LMOD1P29536 600 aaPredicted RBP17.94■□□□□ 0.46
USP4-206ENST00000461553 EPHX2P34913 555 aa17.94■□□□□ 0.46
USP4-206ENST00000461553 SF3B3Q15393 1217 aaKnown RBP17.94■□□□□ 0.46
USP4-206ENST00000461553 ZBTB38Q8NAP3 1195 aaPredicted RBP17.94■□□□□ 0.46
USP4-206ENST00000461553 CCDC191Q8NCU4 936 aa17.94■□□□□ 0.46
USP4-206ENST00000461553 RTFDC1Q9BY42 306 aaPredicted RBP17.94■□□□□ 0.46
USP4-206ENST00000461553 FANCIQ9NVI1 1328 aa17.94■□□□□ 0.46
USP4-206ENST00000461553 PNMA8AQ86V59 439 aaPredicted RBP17.93■□□□□ 0.46
USP4-206ENST00000461553 CWC25Q9NXE8 425 aaPredicted RBP17.93■□□□□ 0.46
USP4-206ENST00000461553 TRPM7Q96QT4 1865 aa17.92■□□□□ 0.46
USP4-206ENST00000461553 METTL22Q9BUU2 404 aaPredicted RBP17.92■□□□□ 0.46
USP4-206ENST00000461553 MAP3K2Q9Y2U5 619 aa17.92■□□□□ 0.46
USP4-206ENST00000461553 PCCAP05165 728 aaPredicted RBP17.91■□□□□ 0.46
USP4-206ENST00000461553 CELF1Q92879 486 aaKnown RBP17.91■□□□□ 0.46
USP4-206ENST00000461553 CLEC11AQ9Y240 323 aa17.91■□□□□ 0.46
USP4-206ENST00000461553 SALL2Q9Y467 1007 aaPredicted RBP17.91■□□□□ 0.46
USP4-206ENST00000461553 KIAA2012Q0VF49 1180 aa17.9■□□□□ 0.46
USP4-206ENST00000461553 NEXNQ0ZGT2 675 aa17.9■□□□□ 0.46
USP4-206ENST00000461553 KSR2Q6VAB6 950 aa17.9■□□□□ 0.46
USP4-206ENST00000461553 PSME4Q14997 1843 aa17.89■□□□□ 0.45
USP4-206ENST00000461553 PI4KAP2A4QPH2 592 aa17.89■□□□□ 0.45
USP4-206ENST00000461553 SCNN1DP51172 638 aa17.89■□□□□ 0.45
USP4-206ENST00000461553 CCDC152Q4G0S7 254 aa17.89■□□□□ 0.45
USP4-206ENST00000461553 WDR63Q8IWG1 891 aa17.89■□□□□ 0.45
USP4-206ENST00000461553 FAM9BQ8IZU0 186 aa17.89■□□□□ 0.45
USP4-206ENST00000461553 PI4KAP1Q8N8J0 262 aa17.89■□□□□ 0.45
USP4-206ENST00000461553 CREBZFQ9NS37 354 aa17.89■□□□□ 0.45
USP4-206ENST00000461553 ZNRF3Q9ULT6 936 aa17.89■□□□□ 0.45
USP4-206ENST00000461553 PDE8AO60658 829 aa17.88■□□□□ 0.45
USP4-206ENST00000461553 JMYQ8N9B5 988 aa17.88■□□□□ 0.45
USP4-206ENST00000461553 PASKQ96RG2 1323 aa17.88■□□□□ 0.45
USP4-206ENST00000461553 CDHR2Q9BYE9 1310 aa17.88■□□□□ 0.45
USP4-206ENST00000461553 SLC4A2P04920 1241 aa17.87■□□□□ 0.45
USP4-206ENST00000461553 NSFL1CQ9UNZ2 370 aaKnown RBP17.87■□□□□ 0.45
USP4-206ENST00000461553 SCN9AQ15858 1988 aa17.86■□□□□ 0.45
USP4-206ENST00000461553 RPS8P62241 208 aaKnown RBP17.86■□□□□ 0.45
USP4-206ENST00000461553 CXCL9Q07325 125 aa17.86■□□□□ 0.45
USP4-206ENST00000461553 FLIIQ13045 1269 aa17.86■□□□□ 0.45
USP4-206ENST00000461553 CIAPIN1Q6FI81 312 aa17.86■□□□□ 0.45
USP4-206ENST00000461553 EPS15P42566 896 aa17.85■□□□□ 0.45
USP4-206ENST00000461553 FKBP5Q13451 457 aaPredicted RBP17.85■□□□□ 0.45
USP4-206ENST00000461553 WASHC4Q2M389 1173 aa17.85■□□□□ 0.45
USP4-206ENST00000461553 G2E3Q7L622 706 aa17.85■□□□□ 0.45
USP4-206ENST00000461553 EYA3Q99504 573 aa17.85■□□□□ 0.45
USP4-206ENST00000461553 MYH16Q9H6N6 1097 aa17.85■□□□□ 0.45
USP4-206ENST00000461553 SEC31BQ9NQW1 1179 aa17.85■□□□□ 0.45
USP4-206ENST00000461553 GPRC5DQ9NZD1 345 aa17.85■□□□□ 0.45
USP4-206ENST00000461553 NEURL1BA8MQ27 555 aa17.84■□□□□ 0.45
USP4-206ENST00000461553 C6orf229H3BNL8 230 aa17.84■□□□□ 0.45
USP4-206ENST00000461553 IGKV5-2P06315 115 aa17.84■□□□□ 0.45
USP4-206ENST00000461553 CTSWP56202 376 aa17.84■□□□□ 0.45
USP4-206ENST00000461553 GPSM2P81274 684 aa17.84■□□□□ 0.45
USP4-206ENST00000461553 TNIP1Q15025 636 aa17.84■□□□□ 0.45
USP4-206ENST00000461553 CWF19L2Q2TBE0 894 aaKnown RBP17.84■□□□□ 0.45
USP4-206ENST00000461553 MAP1SQ66K74 1059 aaPredicted RBP17.84■□□□□ 0.45
USP4-206ENST00000461553 USP50Q70EL3 339 aaPredicted RBP17.84■□□□□ 0.45
USP4-206ENST00000461553 JARID2Q92833 1246 aaPredicted RBP17.84■□□□□ 0.45
USP4-206ENST00000461553 CCDC85AQ96PX6 553 aaPredicted RBP17.84■□□□□ 0.45
USP4-206ENST00000461553 BCL2L13Q9BXK5 485 aa17.84■□□□□ 0.45
USP4-206ENST00000461553 RAD17O75943 681 aa17.83■□□□□ 0.44
USP4-206ENST00000461553 GMPSP49915 693 aaPredicted RBP17.83■□□□□ 0.44
USP4-206ENST00000461553 EXOSC9Q06265 439 aaKnown RBP17.83■□□□□ 0.44
USP4-206ENST00000461553 CNTROBQ8N137 903 aa17.83■□□□□ 0.44
USP4-206ENST00000461553 CDC5LQ99459 802 aaKnown RBP17.83■□□□□ 0.44
USP4-206ENST00000461553 ADARB2Q9NS39 739 aaKnown RBP17.83■□□□□ 0.44
USP4-206ENST00000461553 A0A1B0GUL6 1792 aa17.83■□□□□ 0.44
USP4-206ENST00000461553 CNTNAP1P78357 1384 aa17.82■□□□□ 0.44
USP4-206ENST00000461553 TMEM88BA6NKF7 163 aa17.82■□□□□ 0.44
USP4-206ENST00000461553 YDJCA8MPS7 323 aa17.82■□□□□ 0.44
USP4-206ENST00000461553 UFL1O94874 794 aa17.82■□□□□ 0.44
USP4-206ENST00000461553 ITGBL1O95965 494 aaPredicted RBP17.82■□□□□ 0.44
USP4-206ENST00000461553 ANKRD18AQ8IVF6 992 aa17.82■□□□□ 0.44
USP4-206ENST00000461553 DNAAF4Q8WXU2 420 aa17.82■□□□□ 0.44
USP4-206ENST00000461553 DBNDD1Q9H9R9 158 aa17.82■□□□□ 0.44
USP4-206ENST00000461553 ANKIB1Q9P2G1 1089 aa17.82■□□□□ 0.44
USP4-206ENST00000461553 POLLQ9UGP5 575 aa17.82■□□□□ 0.44
USP4-206ENST00000461553 MKRN1Q9UHC7 482 aaKnown RBP17.82■□□□□ 0.44
USP4-206ENST00000461553 RIMBP2O15034 1052 aa17.81■□□□□ 0.44
USP4-206ENST00000461553 VAMP4O75379 141 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms