RNA–Protein interactions for RNA: ENST00000461115.5

IFT88-204, Transcript of intraflagellar transport 88, humanhuman

TSL 2

Gene IFT88, Length 1,440 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT88-204ENST00000461115 LMBR1LQ6UX01 489 aa13.26□□□□□ -0.29
IFT88-204ENST00000461115 CNTROBQ8N137 903 aa13.26□□□□□ -0.29
IFT88-204ENST00000461115 SMARCC1Q92922 1105 aaPredicted RBP13.26□□□□□ -0.29
IFT88-204ENST00000461115 GPATCH3Q96I76 525 aa13.26□□□□□ -0.29
IFT88-204ENST00000461115 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.26□□□□□ -0.29
IFT88-204ENST00000461115 BCORQ6W2J9 1755 aa13.26□□□□□ -0.29
IFT88-204ENST00000461115 SBF2Q86WG5 1849 aa13.25□□□□□ -0.29
IFT88-204ENST00000461115 SPEF2Q9C093 1822 aa13.25□□□□□ -0.29
IFT88-204ENST00000461115 IFIT2P09913 472 aaKnown RBP13.25□□□□□ -0.29
IFT88-204ENST00000461115 ZBTB38Q8NAP3 1195 aaPredicted RBP13.25□□□□□ -0.29
IFT88-204ENST00000461115 CERKQ8TCT0 537 aa13.25□□□□□ -0.29
IFT88-204ENST00000461115 SLC39A7Q92504 469 aa13.25□□□□□ -0.29
IFT88-204ENST00000461115 ZBTB1Q9Y2K1 713 aa13.25□□□□□ -0.29
IFT88-204ENST00000461115 RFX7Q2KHR2 1363 aa13.25□□□□□ -0.29
IFT88-204ENST00000461115 LAMB2P55268 1798 aa13.25□□□□□ -0.29
IFT88-204ENST00000461115 SGSM2O43147 1006 aa13.24□□□□□ -0.29
IFT88-204ENST00000461115 C7P10643 843 aa13.24□□□□□ -0.29
IFT88-204ENST00000461115 INTS5Q6P9B9 1019 aaKnown RBP13.24□□□□□ -0.29
IFT88-204ENST00000461115 ATG9AQ7Z3C6 839 aa13.24□□□□□ -0.29
IFT88-204ENST00000461115 AACSQ86V21 672 aa13.24□□□□□ -0.29
IFT88-204ENST00000461115 ZNF34Q8IZ26 560 aa13.24□□□□□ -0.29
IFT88-204ENST00000461115 EVI5LQ96CN4 794 aa13.24□□□□□ -0.29
IFT88-204ENST00000461115 LOC102724428A0A0B4J2F2 783 aa13.23□□□□□ -0.29
IFT88-204ENST00000461115 TRIM6-TRIM34B2RNG4 842 aa13.23□□□□□ -0.29
IFT88-204ENST00000461115 ONECUT3O60422 494 aaPredicted RBP13.23□□□□□ -0.29
IFT88-204ENST00000461115 ATP5JP18859 108 aa13.23□□□□□ -0.29
IFT88-204ENST00000461115 IL15P40933 162 aaPredicted RBP13.23□□□□□ -0.29
IFT88-204ENST00000461115 SIK1P57059 783 aa13.23□□□□□ -0.29
IFT88-204ENST00000461115 NLRP10Q86W26 655 aa13.23□□□□□ -0.29
IFT88-204ENST00000461115 HSCBQ8IWL3 235 aa13.23□□□□□ -0.29
IFT88-204ENST00000461115 KLHDC4Q8TBB5 520 aa13.23□□□□□ -0.29
IFT88-204ENST00000461115 NGLY1Q96IV0 654 aa13.23□□□□□ -0.29
IFT88-204ENST00000461115 AK7Q96M32 723 aa13.23□□□□□ -0.29
IFT88-204ENST00000461115 BTAF1O14981 1849 aa13.23□□□□□ -0.29
IFT88-204ENST00000461115 LY75O60449 1722 aa13.23□□□□□ -0.29
IFT88-204ENST00000461115 PALLDQ8WX93 1383 aa13.22□□□□□ -0.29
IFT88-204ENST00000461115 EYA2O00167 538 aa13.22□□□□□ -0.29
IFT88-204ENST00000461115 TIE1P35590 1138 aa13.22□□□□□ -0.29
IFT88-204ENST00000461115 HLFQ16534 295 aa13.22□□□□□ -0.29
IFT88-204ENST00000461115 TNNI3KQ59H18 835 aa13.22□□□□□ -0.29
IFT88-204ENST00000461115 RILPL2Q969X0 211 aa13.22□□□□□ -0.29
IFT88-204ENST00000461115 CCDC87Q9NVE4 849 aa13.22□□□□□ -0.29
IFT88-204ENST00000461115 FPGT-TNNI3KV9GXZ4 949 aa13.22□□□□□ -0.29
IFT88-204ENST00000461115 LRP5O75197 1615 aa13.22□□□□□ -0.29
IFT88-204ENST00000461115 HIP1O00291 1037 aa13.22□□□□□ -0.29
IFT88-204ENST00000461115 PYGBP11216 843 aa13.22□□□□□ -0.29
IFT88-204ENST00000461115 JARID2Q92833 1246 aaPredicted RBP13.22□□□□□ -0.29
IFT88-204ENST00000461115 KCNB2Q92953 911 aa13.22□□□□□ -0.29
IFT88-204ENST00000461115 DBNLQ9UJU6 430 aaKnown RBP13.22□□□□□ -0.29
IFT88-204ENST00000461115 TAF1LQ8IZX4 1826 aa13.21□□□□□ -0.3
IFT88-204ENST00000461115 RAD50Q92878 1312 aa13.21□□□□□ -0.3
IFT88-204ENST00000461115 K7ELQ4 463 aaPredicted RBP13.21□□□□□ -0.3
IFT88-204ENST00000461115 HSPA4P34932 840 aa13.21□□□□□ -0.3
IFT88-204ENST00000461115 TFCP2Q12800 502 aa13.21□□□□□ -0.3
IFT88-204ENST00000461115 ITPK1Q13572 414 aa13.21□□□□□ -0.3
IFT88-204ENST00000461115 SPOCK2Q92563 424 aa13.21□□□□□ -0.3
IFT88-204ENST00000461115 SYTL4Q96C24 671 aaPredicted RBP13.21□□□□□ -0.3
IFT88-204ENST00000461115 C8orf37Q96NL8 207 aa13.21□□□□□ -0.3
IFT88-204ENST00000461115 IL25Q9H293 177 aa13.21□□□□□ -0.3
IFT88-204ENST00000461115 CIZ1Q9ULV3 898 aaPredicted RBP13.21□□□□□ -0.3
IFT88-204ENST00000461115 ZNF609O15014 1411 aa13.2□□□□□ -0.3
IFT88-204ENST00000461115 ATRNO75882 1429 aa13.2□□□□□ -0.3
IFT88-204ENST00000461115 DDX60Q8IY21 1712 aaKnown RBP13.2□□□□□ -0.3
IFT88-204ENST00000461115 CD2BP2O95400 341 aaKnown RBP13.2□□□□□ -0.3
IFT88-204ENST00000461115 ATP6V1AP38606 617 aa13.2□□□□□ -0.3
IFT88-204ENST00000461115 CRKLP46109 303 aaKnown RBP13.2□□□□□ -0.3
IFT88-204ENST00000461115 ATN1P54259 1190 aaPredicted RBP13.2□□□□□ -0.3
IFT88-204ENST00000461115 FAM98CQ17RN3 349 aaKnown RBP13.2□□□□□ -0.3
IFT88-204ENST00000461115 DZIP3Q86Y13 1208 aaKnown RBP13.2□□□□□ -0.3
IFT88-204ENST00000461115 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.2□□□□□ -0.3
IFT88-204ENST00000461115 LSG1Q9H089 658 aaKnown RBP13.2□□□□□ -0.3
IFT88-204ENST00000461115 SIL1Q9H173 461 aa13.2□□□□□ -0.3
IFT88-204ENST00000461115 TLR7Q9NYK1 1049 aaKnown RBP13.2□□□□□ -0.3
IFT88-204ENST00000461115 METRNQ9UJH8 293 aa13.2□□□□□ -0.3
IFT88-204ENST00000461115 CNTNAP4Q9C0A0 1308 aa13.19□□□□□ -0.3
IFT88-204ENST00000461115 CAMTA2O94983 1202 aa13.19□□□□□ -0.3
IFT88-204ENST00000461115 MCCP23508 829 aa13.19□□□□□ -0.3
IFT88-204ENST00000461115 RUFY2Q8WXA3 655 aa13.19□□□□□ -0.3
IFT88-204ENST00000461115 CCDC8Q9H0W5 538 aaPredicted RBP13.19□□□□□ -0.3
IFT88-204ENST00000461115 BMP2KQ9NSY1 1161 aaPredicted RBP13.19□□□□□ -0.3
IFT88-204ENST00000461115 USP21Q9UK80 565 aa13.19□□□□□ -0.3
IFT88-204ENST00000461115 SCN7AQ01118 1682 aa13.19□□□□□ -0.3
IFT88-204ENST00000461115 NFKBIBQ15653 356 aa13.18□□□□□ -0.3
IFT88-204ENST00000461115 TTLL11Q8NHH1 800 aa13.18□□□□□ -0.3
IFT88-204ENST00000461115 ACSBG1Q96GR2 724 aa13.18□□□□□ -0.3
IFT88-204ENST00000461115 BCL11AQ9H165 835 aa13.18□□□□□ -0.3
IFT88-204ENST00000461115 CHMP5Q9NZZ3 219 aa13.18□□□□□ -0.3
IFT88-204ENST00000461115 CCDC9Q9Y3X0 531 aaKnown RBP13.18□□□□□ -0.3
IFT88-204ENST00000461115 RTL9Q8NET4 1388 aa13.18□□□□□ -0.3
IFT88-204ENST00000461115 MED23Q9ULK4 1368 aa13.18□□□□□ -0.3
IFT88-204ENST00000461115 ARAP2Q8WZ64 1704 aa13.17□□□□□ -0.3
IFT88-204ENST00000461115 UBN2Q6ZU65 1347 aa13.17□□□□□ -0.3
IFT88-204ENST00000461115 KCNQ2O43526 872 aa13.17□□□□□ -0.3
IFT88-204ENST00000461115 PDE8AO60658 829 aa13.17□□□□□ -0.3
IFT88-204ENST00000461115 MCM2P49736 904 aa13.17□□□□□ -0.3
IFT88-204ENST00000461115 PARP10Q53GL7 1025 aa13.17□□□□□ -0.3
IFT88-204ENST00000461115 RC3H1Q5TC82 1133 aaKnown RBP13.17□□□□□ -0.3
IFT88-204ENST00000461115 CLEC4GQ6UXB4 293 aa13.17□□□□□ -0.3
IFT88-204ENST00000461115 IFNL1Q8IU54 200 aa13.17□□□□□ -0.3
IFT88-204ENST00000461115 IFNLR1Q8IU57 520 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms