RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 CCDC171Q6TFL3 1326 aa7.26□□□□□ -1.25
VPS13D-202ENST00000460333 KCNQ3O43525 872 aa7.26□□□□□ -1.25
VPS13D-202ENST00000460333 CPLX2Q6PUV4 134 aaKnown RBP7.26□□□□□ -1.25
VPS13D-202ENST00000460333 TBC1D9Q6ZT07 1266 aa7.26□□□□□ -1.25
VPS13D-202ENST00000460333 SSFA2P28290 1259 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 PDE1AP54750 535 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 MAP3K11Q16584 847 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 RHPN1Q8TCX5 695 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 ZNF496Q96IT1 587 aaPredicted RBP7.25□□□□□ -1.25
VPS13D-202ENST00000460333 ZSCAN31Q96LW9 406 aaPredicted RBP7.25□□□□□ -1.25
VPS13D-202ENST00000460333 ZNF396Q96N95 335 aaPredicted RBP7.25□□□□□ -1.25
VPS13D-202ENST00000460333 METTL22Q9BUU2 404 aaPredicted RBP7.25□□□□□ -1.25
VPS13D-202ENST00000460333 CWC25Q9NXE8 425 aaPredicted RBP7.25□□□□□ -1.25
VPS13D-202ENST00000460333 PXDNLA1KZ92 1463 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 FIBPO43427 364 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 SMC2O95347 1197 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 CAVIN2O95810 425 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 PLBD2Q8NHP8 589 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 IL1RAPL2Q9NP60 686 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 A0A087WZG4 1122 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 BEND3Q5T5X7 828 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 SMARCE1Q969G3 411 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 USP44Q9H0E7 712 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 FAM193AP78312 1265 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 AACSQ86V21 672 aa7.25□□□□□ -1.25
VPS13D-202ENST00000460333 MCM3P25205 808 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 ANKRD1Q15327 319 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 DDB1Q16531 1140 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 SSH3Q8TE77 659 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 SDF4Q9BRK5 362 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 TTC41PQ6P2S7 1318 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 SPDYE4A6NLX3 237 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 GSDMDP57764 484 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 RAB3GAP1Q15042 981 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 CCDC57Q2TAC2 916 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 CEP57L1Q8IYX8 460 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 TAOK2Q9UL54 1235 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 AXDND1Q5T1B0 1012 aaPredicted RBP7.24□□□□□ -1.25
VPS13D-202ENST00000460333 ZNF397Q8NF99 534 aaPredicted RBP7.24□□□□□ -1.25
VPS13D-202ENST00000460333 MYRIPQ8NFW9 859 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 SMARCC1Q92922 1105 aaPredicted RBP7.24□□□□□ -1.25
VPS13D-202ENST00000460333 ECHDC1Q9NTX5 307 aa7.24□□□□□ -1.25
VPS13D-202ENST00000460333 LTN1O94822 1766 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 ABCC6O95255 1503 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 GOLGA6L7A0A1B0GV03 622 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 SHTN1A0MZ66 631 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 ZSCAN12O43309 604 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 ADCY5O95622 1261 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 SDSP20132 328 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 GTF2F1P35269 517 aaKnown RBP eCLIP7.23□□□□□ -1.25
VPS13D-202ENST00000460333 IQCEQ6IPM2 695 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 NUTM1Q86Y26 1132 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 CYP27B1O15528 508 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 DLG5Q8TDM6 1919 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 SMTNL1A8MU46 457 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 BAG6P46379 1132 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 TRIM29Q14134 588 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 SIRT2Q8IXJ6 389 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 FSD1Q9BTV5 496 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 POLD1P28340 1107 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 CWF19L2Q2TBE0 894 aaKnown RBP7.23□□□□□ -1.25
VPS13D-202ENST00000460333 ZNF772Q68DY9 489 aaPredicted RBP7.23□□□□□ -1.25
VPS13D-202ENST00000460333 TTLL5Q6EMB2 1281 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 MICALCLQ6ZW33 695 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 SIL1Q9H173 461 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 USP25Q9UHP3 1055 aa7.23□□□□□ -1.25
VPS13D-202ENST00000460333 RGPD1P0DJD0 1748 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 PIP4K2AP48426 406 aaPredicted RBP7.22□□□□□ -1.25
VPS13D-202ENST00000460333 MAP9Q49MG5 647 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 SYNE3Q6ZMZ3 975 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 UBE3BQ7Z3V4 1068 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 CAGE1Q8TC20 777 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 CCDC47Q96A33 483 aaKnown RBP7.22□□□□□ -1.25
VPS13D-202ENST00000460333 NEUROD6Q96NK8 337 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 THRAP3Q9Y2W1 955 aaKnown RBP7.22□□□□□ -1.25
VPS13D-202ENST00000460333 IBTKQ9P2D0 1353 aaPredicted RBP7.22□□□□□ -1.25
VPS13D-202ENST00000460333 PES1O00541 588 aaKnown RBP7.22□□□□□ -1.25
VPS13D-202ENST00000460333 DMTNQ08495 405 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 RRP12Q5JTH9 1297 aaKnown RBP7.22□□□□□ -1.25
VPS13D-202ENST00000460333 CEP126Q9P2H0 1117 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 DACH1Q9UI36 760 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 AKAP2Q9Y2D5 859 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 GCKRQ14397 625 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 FILIP1LQ4L180 1135 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 JAKMIP3Q5VZ66 844 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 C16orf71Q8IYS4 520 aaPredicted RBP7.22□□□□□ -1.25
VPS13D-202ENST00000460333 EVI5LQ96CN4 794 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 OSBPL3Q9H4L5 887 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 MYO6Q9UM54 1294 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 ZNF652Q9Y2D9 606 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 V9GYY5 206 aaPredicted RBP7.22□□□□□ -1.25
VPS13D-202ENST00000460333 HEG1Q9ULI3 1381 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 ATP10DQ9P241 1426 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 PNMA6EA0A0J9YXQ4 647 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 GOLGA6L9A6NEM1 432 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 CTAGE5O15320 804 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 ZNF500O60304 480 aaPredicted RBP7.22□□□□□ -1.25
VPS13D-202ENST00000460333 NBPF7P0C2Y1 421 aaPredicted RBP7.22□□□□□ -1.25
VPS13D-202ENST00000460333 CEP135Q66GS9 1140 aa7.22□□□□□ -1.25
VPS13D-202ENST00000460333 PDILTQ8N807 584 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 125.1 ms