RNA–Protein interactions for RNA: ENST00000459860.1

SSNA1-202, Transcript of SS nuclear autoantigen 1, humanhuman

TSL 1 (best)

Gene SSNA1, Length 1,170 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1-202ENST00000459860 MYH3P11055 1940 aa27.62■■■□□ 2.01
SSNA1-202ENST00000459860 FER1L6Q2WGJ9 1857 aa27.61■■■□□ 2.01
SSNA1-202ENST00000459860 POTECB2RU33 542 aa27.61■■■□□ 2.01
SSNA1-202ENST00000459860 VEGFAP15692 232 aaPredicted RBP27.61■■■□□ 2.01
SSNA1-202ENST00000459860 DDX46Q7L014 1031 aaKnown RBP27.61■■■□□ 2.01
SSNA1-202ENST00000459860 SLC4A10Q6U841 1118 aa27.6■■■□□ 2.01
SSNA1-202ENST00000459860 CDHR2Q9BYE9 1310 aa27.6■■■□□ 2.01
SSNA1-202ENST00000459860 JMYQ8N9B5 988 aa27.59■■■□□ 2.01
SSNA1-202ENST00000459860 WDR90Q96KV7 1748 aa27.58■■■□□ 2.01
SSNA1-202ENST00000459860 GCKRQ14397 625 aa27.58■■■□□ 2.01
SSNA1-202ENST00000459860 CCDC93Q567U6 631 aa27.58■■■□□ 2.01
SSNA1-202ENST00000459860 TMX4Q9H1E5 349 aaPredicted RBP27.58■■■□□ 2.01
SSNA1-202ENST00000459860 PPEF1O14829 653 aaPredicted RBP27.57■■■□□ 2
SSNA1-202ENST00000459860 PDE8AO60658 829 aa27.57■■■□□ 2
SSNA1-202ENST00000459860 BEND3Q5T5X7 828 aa27.57■■■□□ 2
SSNA1-202ENST00000459860 ABCC4O15439 1325 aa27.57■■■□□ 2
SSNA1-202ENST00000459860 CCDC88AQ3V6T2 1871 aa27.57■■■□□ 2
SSNA1-202ENST00000459860 RARSP54136 660 aaKnown RBP27.56■■■□□ 2
SSNA1-202ENST00000459860 SF3B3Q15393 1217 aaKnown RBP27.56■■■□□ 2
SSNA1-202ENST00000459860 UBE3BQ7Z3V4 1068 aa27.56■■■□□ 2
SSNA1-202ENST00000459860 JARID2Q92833 1246 aaPredicted RBP27.56■■■□□ 2
SSNA1-202ENST00000459860 SRCIN1Q9C0H9 1055 aa27.56■■■□□ 2
SSNA1-202ENST00000459860 KIF16BQ96L93 1317 aa27.56■■■□□ 2
SSNA1-202ENST00000459860 LTBP3Q9NS15 1303 aa27.56■■■□□ 2
SSNA1-202ENST00000459860 ALDH1L1O75891 902 aa27.54■■■□□ 2
SSNA1-202ENST00000459860 GRAPQ13588 217 aa27.54■■■□□ 2
SSNA1-202ENST00000459860 CCDC152Q4G0S7 254 aa27.54■■■□□ 2
SSNA1-202ENST00000459860 CC2D2BQ6DHV5 1058 aa27.54■■■□□ 2
SSNA1-202ENST00000459860 GRAPLQ8TC17 118 aaPredicted RBP27.54■■■□□ 2
SSNA1-202ENST00000459860 C7orf43Q8WVR3 580 aa27.54■■■□□ 2
SSNA1-202ENST00000459860 TAOK3Q9H2K8 898 aa27.54■■■□□ 2
SSNA1-202ENST00000459860 TAF1P21675 1872 aa27.53■■■□□ 2
SSNA1-202ENST00000459860 H7C1W4 665 aa27.53■■■□□ 2
SSNA1-202ENST00000459860 BRPF1P55201 1214 aaPredicted RBP27.53■■■□□ 2
SSNA1-202ENST00000459860 RTKN2Q8IZC4 609 aa27.53■■■□□ 2
SSNA1-202ENST00000459860 BBOX1O75936 387 aa27.52■■■□□ 2
SSNA1-202ENST00000459860 TIAM2Q8IVF5 1701 aa27.51■■□□□ 1.99
SSNA1-202ENST00000459860 GRIPAP1Q4V328 841 aa27.51■■□□□ 1.99
SSNA1-202ENST00000459860 DPY19L2Q6NUT2 758 aa27.51■■□□□ 1.99
SSNA1-202ENST00000459860 TMC4Q7Z404 712 aa27.51■■□□□ 1.99
SSNA1-202ENST00000459860 API5Q9BZZ5 524 aaKnown RBP27.51■■□□□ 1.99
SSNA1-202ENST00000459860 C9orf78Q9NZ63 289 aaPredicted RBP27.51■■□□□ 1.99
SSNA1-202ENST00000459860 NOB1Q9ULX3 412 aaKnown RBP27.51■■□□□ 1.99
SSNA1-202ENST00000459860 DICER1Q9UPY3 1922 aaKnown RBP27.5■■□□□ 1.99
SSNA1-202ENST00000459860 CTSWP56202 376 aa27.5■■□□□ 1.99
SSNA1-202ENST00000459860 GRM8O00222 908 aa27.49■■□□□ 1.99
SSNA1-202ENST00000459860 FKBP4Q02790 459 aaKnown RBP eCLIP27.48■■□□□ 1.99
SSNA1-202ENST00000459860 ATP6V0A2Q9Y487 856 aa27.48■■□□□ 1.99
SSNA1-202ENST00000459860 LRRC37AA6NMS7 1700 aa27.47■■□□□ 1.99
SSNA1-202ENST00000459860 IPO8O15397 1037 aaKnown RBP27.47■■□□□ 1.99
SSNA1-202ENST00000459860 OLFM4Q6UX06 510 aa27.47■■□□□ 1.99
SSNA1-202ENST00000459860 CCDC85AQ96PX6 553 aaPredicted RBP27.47■■□□□ 1.99
SSNA1-202ENST00000459860 PLA2G12BQ9BX93 195 aa27.47■■□□□ 1.99
SSNA1-202ENST00000459860 CASP7P55210 303 aa27.46■■□□□ 1.99
SSNA1-202ENST00000459860 DDNO94850 711 aaPredicted RBP27.45■■□□□ 1.98
SSNA1-202ENST00000459860 SP8Q8IXZ3 490 aa27.45■■□□□ 1.98
SSNA1-202ENST00000459860 ARHGAP45Q92619 1136 aa27.45■■□□□ 1.98
SSNA1-202ENST00000459860 CELF1Q92879 486 aaKnown RBP27.45■■□□□ 1.98
SSNA1-202ENST00000459860 SPEF2Q9C093 1822 aa27.45■■□□□ 1.98
SSNA1-202ENST00000459860 CCT4P50991 539 aaKnown RBP27.44■■□□□ 1.98
SSNA1-202ENST00000459860 TTLL11Q8NHH1 800 aa27.44■■□□□ 1.98
SSNA1-202ENST00000459860 FRAT1Q92837 279 aaPredicted RBP27.44■■□□□ 1.98
SSNA1-202ENST00000459860 CDC5LQ99459 802 aaKnown RBP27.44■■□□□ 1.98
SSNA1-202ENST00000459860 PSMD1Q99460 953 aa27.44■■□□□ 1.98
SSNA1-202ENST00000459860 RTL9Q8NET4 1388 aa27.44■■□□□ 1.98
SSNA1-202ENST00000459860 SNED1Q8TER0 1413 aa27.43■■□□□ 1.98
SSNA1-202ENST00000459860 BCAR3O75815 825 aa27.43■■□□□ 1.98
SSNA1-202ENST00000459860 RPS8P62241 208 aaKnown RBP27.43■■□□□ 1.98
SSNA1-202ENST00000459860 SEC31BQ9NQW1 1179 aa27.43■■□□□ 1.98
SSNA1-202ENST00000459860 ANKRD18AQ8IVF6 992 aa27.42■■□□□ 1.98
SSNA1-202ENST00000459860 PCNTO95613 3336 aa27.41■■□□□ 1.98
SSNA1-202ENST00000459860 POTEIP0CG38 1075 aa27.41■■□□□ 1.98
SSNA1-202ENST00000459860 POTEJP0CG39 1038 aa27.41■■□□□ 1.98
SSNA1-202ENST00000459860 COL13A1Q5TAT6 717 aaPredicted RBP27.41■■□□□ 1.98
SSNA1-202ENST00000459860 DPP8Q6V1X1 898 aaPredicted RBP27.41■■□□□ 1.98
SSNA1-202ENST00000459860 GREM2Q9H772 168 aa27.41■■□□□ 1.98
SSNA1-202ENST00000459860 COL4A1P02462 1669 aa27.4■■□□□ 1.98
SSNA1-202ENST00000459860 MPNDQ8N594 471 aa27.4■■□□□ 1.98
SSNA1-202ENST00000459860 SUPT20HQ8NEM7 779 aa27.4■■□□□ 1.98
SSNA1-202ENST00000459860 ZNF277Q9NRM2 450 aaPredicted RBP27.4■■□□□ 1.98
SSNA1-202ENST00000459860 CHMP3Q9Y3E7 222 aa27.4■■□□□ 1.98
SSNA1-202ENST00000459860 UTYO14607 1347 aa27.39■■□□□ 1.97
SSNA1-202ENST00000459860 CSF1RP07333 972 aa27.38■■□□□ 1.97
SSNA1-202ENST00000459860 IARSP41252 1262 aaKnown RBP27.38■■□□□ 1.97
SSNA1-202ENST00000459860 FAM161AQ3B820 660 aa27.38■■□□□ 1.97
SSNA1-202ENST00000459860 ZKSCAN2Q63HK3 967 aa27.38■■□□□ 1.97
SSNA1-202ENST00000459860 CHADLQ6NUI6 762 aa27.38■■□□□ 1.97
SSNA1-202ENST00000459860 ATF7IPQ6VMQ6 1270 aa27.38■■□□□ 1.97
SSNA1-202ENST00000459860 L3MBTL3Q96JM7 780 aaPredicted RBP27.38■■□□□ 1.97
SSNA1-202ENST00000459860 NBPF7P0C2Y1 421 aaPredicted RBP27.37■■□□□ 1.97
SSNA1-202ENST00000459860 ITGA6P23229 1130 aa27.37■■□□□ 1.97
SSNA1-202ENST00000459860 IGHMBP2P38935 993 aaKnown RBP27.37■■□□□ 1.97
SSNA1-202ENST00000459860 SLC51AQ86UW1 340 aa27.37■■□□□ 1.97
SSNA1-202ENST00000459860 YTHDC1Q96MU7 727 aaKnown RBP27.37■■□□□ 1.97
SSNA1-202ENST00000459860 FOXO4P98177 505 aa27.36■■□□□ 1.97
SSNA1-202ENST00000459860 ANKRD18BA2A2Z9 1011 aa27.35■■□□□ 1.97
SSNA1-202ENST00000459860 TRIM27P14373 513 aa27.35■■□□□ 1.97
SSNA1-202ENST00000459860 IFIT5Q13325 482 aaKnown RBP27.35■■□□□ 1.97
SSNA1-202ENST00000459860 LMBR1LQ6UX01 489 aa27.35■■□□□ 1.97
SSNA1-202ENST00000459860 SUCLG2Q96I99 432 aa27.35■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms