RNA–Protein interactions for RNA: ENST00000458610.6

CD28-203, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 705 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-203ENST00000458610 SRCIN1Q9C0H9 1055 aa20.48■□□□□ 0.87
CD28-203ENST00000458610 GPBP1L1Q9HC44 474 aaPredicted RBP20.48■□□□□ 0.87
CD28-203ENST00000458610 ZBED9Q6R2W3 1325 aa20.48■□□□□ 0.87
CD28-203ENST00000458610 JARID2Q92833 1246 aaPredicted RBP20.47■□□□□ 0.87
CD28-203ENST00000458610 BRPF1P55201 1214 aaPredicted RBP20.46■□□□□ 0.87
CD28-203ENST00000458610 RPS8P62241 208 aaKnown RBP20.46■□□□□ 0.87
CD28-203ENST00000458610 DPY19L2Q6NUT2 758 aa20.46■□□□□ 0.87
CD28-203ENST00000458610 SUPT20HQ8NEM7 779 aa20.46■□□□□ 0.87
CD28-203ENST00000458610 C9orf78Q9NZ63 289 aaPredicted RBP20.46■□□□□ 0.87
CD28-203ENST00000458610 KDM2BQ8NHM5 1336 aa20.46■□□□□ 0.87
CD28-203ENST00000458610 PLA2G12BQ9BX93 195 aa20.45■□□□□ 0.86
CD28-203ENST00000458610 BCL2L13Q9BXK5 485 aa20.45■□□□□ 0.86
CD28-203ENST00000458610 VPS33BQ9H267 617 aa20.45■□□□□ 0.86
CD28-203ENST00000458610 CTSWP56202 376 aa20.44■□□□□ 0.86
CD28-203ENST00000458610 OLFM4Q6UX06 510 aa20.44■□□□□ 0.86
CD28-203ENST00000458610 MPNDQ8N594 471 aa20.44■□□□□ 0.86
CD28-203ENST00000458610 RARSP54136 660 aaKnown RBP20.43■□□□□ 0.86
CD28-203ENST00000458610 TTLL11Q8NHH1 800 aa20.43■□□□□ 0.86
CD28-203ENST00000458610 ZNF526Q8TF50 670 aaPredicted RBP20.43■□□□□ 0.86
CD28-203ENST00000458610 JDP2Q8WYK2 163 aa20.43■□□□□ 0.86
CD28-203ENST00000458610 CDC5LQ99459 802 aaKnown RBP20.43■□□□□ 0.86
CD28-203ENST00000458610 API5Q9BZZ5 524 aaKnown RBP20.43■□□□□ 0.86
CD28-203ENST00000458610 GRM8O00222 908 aa20.42■□□□□ 0.86
CD28-203ENST00000458610 IPO8O15397 1037 aaKnown RBP20.42■□□□□ 0.86
CD28-203ENST00000458610 IARSP41252 1262 aaKnown RBP20.42■□□□□ 0.86
CD28-203ENST00000458610 DPP8Q6V1X1 898 aaPredicted RBP20.42■□□□□ 0.86
CD28-203ENST00000458610 ANKRD18AQ8IVF6 992 aa20.42■□□□□ 0.86
CD28-203ENST00000458610 CELF1Q92879 486 aaKnown RBP20.42■□□□□ 0.86
CD28-203ENST00000458610 ZNF277Q9NRM2 450 aaPredicted RBP20.42■□□□□ 0.86
CD28-203ENST00000458610 PRELPP51888 382 aa20.41■□□□□ 0.86
CD28-203ENST00000458610 CASP7P55210 303 aa20.41■□□□□ 0.86
CD28-203ENST00000458610 NOB1Q9ULX3 412 aaKnown RBP20.41■□□□□ 0.86
CD28-203ENST00000458610 KIF16BQ96L93 1317 aa20.41■□□□□ 0.86
CD28-203ENST00000458610 GLTPD2A6NH11 291 aa20.4■□□□□ 0.86
CD28-203ENST00000458610 FER1L6Q2WGJ9 1857 aa20.4■□□□□ 0.86
CD28-203ENST00000458610 ARHGAP45Q92619 1136 aa20.4■□□□□ 0.86
CD28-203ENST00000458610 CCDC85AQ96PX6 553 aaPredicted RBP20.4■□□□□ 0.86
CD28-203ENST00000458610 RTFDC1Q9BY42 306 aaPredicted RBP20.4■□□□□ 0.86
CD28-203ENST00000458610 DDX60Q8IY21 1712 aaKnown RBP20.39■□□□□ 0.86
CD28-203ENST00000458610 RTL9Q8NET4 1388 aa20.39■□□□□ 0.85
CD28-203ENST00000458610 CCT4P50991 539 aaKnown RBP20.39■□□□□ 0.85
CD28-203ENST00000458610 SEC31BQ9NQW1 1179 aa20.39■□□□□ 0.85
CD28-203ENST00000458610 NSFL1CQ9UNZ2 370 aaKnown RBP20.39■□□□□ 0.85
CD28-203ENST00000458610 CACNA1SQ13698 1873 aa20.39■□□□□ 0.85
CD28-203ENST00000458610 CSF1RP07333 972 aa20.38■□□□□ 0.85
CD28-203ENST00000458610 LARGE2Q8N3Y3 721 aa20.38■□□□□ 0.85
CD28-203ENST00000458610 HDAC5Q9UQL6 1122 aa20.38■□□□□ 0.85
CD28-203ENST00000458610 SBF1O95248 1867 aa20.37■□□□□ 0.85
CD28-203ENST00000458610 IGHMBP2P38935 993 aaKnown RBP20.37■□□□□ 0.85
CD28-203ENST00000458610 GREM2Q9H772 168 aa20.37■□□□□ 0.85
CD28-203ENST00000458610 LAMB2P55268 1798 aa20.36■□□□□ 0.85
CD28-203ENST00000458610 ANKRD18BA2A2Z9 1011 aa20.36■□□□□ 0.85
CD28-203ENST00000458610 PPIP5K2O43314 1243 aa20.36■□□□□ 0.85
CD28-203ENST00000458610 NIM1KQ8IY84 436 aa20.36■□□□□ 0.85
CD28-203ENST00000458610 EYA3Q99504 573 aa20.36■□□□□ 0.85
CD28-203ENST00000458610 BSDC1Q9NW68 430 aaPredicted RBP20.36■□□□□ 0.85
CD28-203ENST00000458610 SNED1Q8TER0 1413 aa20.36■□□□□ 0.85
CD28-203ENST00000458610 UTYO14607 1347 aa20.35■□□□□ 0.85
CD28-203ENST00000458610 EIF6P56537 245 aaKnown RBP20.35■□□□□ 0.85
CD28-203ENST00000458610 IFIT5Q13325 482 aaKnown RBP20.35■□□□□ 0.85
CD28-203ENST00000458610 MPHOSPH8Q99549 860 aa20.35■□□□□ 0.85
CD28-203ENST00000458610 ANKIB1Q9P2G1 1089 aa20.35■□□□□ 0.85
CD28-203ENST00000458610 C6orf229H3BNL8 230 aa20.34■□□□□ 0.85
CD28-203ENST00000458610 ITGA6P23229 1130 aa20.34■□□□□ 0.85
CD28-203ENST00000458610 FOXO4P98177 505 aa20.34■□□□□ 0.85
CD28-203ENST00000458610 C16orf71Q8IYS4 520 aaPredicted RBP20.34■□□□□ 0.85
CD28-203ENST00000458610 PODXL2Q9NZ53 605 aa20.34■□□□□ 0.85
CD28-203ENST00000458610 CHMP3Q9Y3E7 222 aa20.34■□□□□ 0.85
CD28-203ENST00000458610 GOLGB1Q14789 3259 aaKnown RBP20.34■□□□□ 0.85
CD28-203ENST00000458610 FZD9O00144 591 aa20.33■□□□□ 0.85
CD28-203ENST00000458610 VEGFAP15692 232 aaPredicted RBP20.33■□□□□ 0.85
CD28-203ENST00000458610 GPSM2P81274 684 aa20.33■□□□□ 0.85
CD28-203ENST00000458610 KIAA2012Q0VF49 1180 aa20.33■□□□□ 0.85
CD28-203ENST00000458610 WASHC4Q2M389 1173 aa20.33■□□□□ 0.85
CD28-203ENST00000458610 CCDC57Q2TAC2 916 aa20.33■□□□□ 0.85
CD28-203ENST00000458610 LMBR1LQ6UX01 489 aa20.33■□□□□ 0.85
CD28-203ENST00000458610 RRAGCQ9HB90 399 aa20.33■□□□□ 0.85
CD28-203ENST00000458610 NBPF7P0C2Y1 421 aaPredicted RBP20.32■□□□□ 0.84
CD28-203ENST00000458610 FAM161AQ3B820 660 aa20.32■□□□□ 0.84
CD28-203ENST00000458610 FRAT1Q92837 279 aaPredicted RBP20.32■□□□□ 0.84
CD28-203ENST00000458610 ZC3H12CQ9C0D7 883 aaKnown RBP20.32■□□□□ 0.84
CD28-203ENST00000458610 ANKRD2Q9GZV1 360 aa20.32■□□□□ 0.84
CD28-203ENST00000458610 NMRK2Q9NPI5 230 aa20.32■□□□□ 0.84
CD28-203ENST00000458610 GGA1Q9UJY5 639 aa20.32■□□□□ 0.84
CD28-203ENST00000458610 XDHP47989 1333 aa20.31■□□□□ 0.84
CD28-203ENST00000458610 UTRNP46939 3433 aa20.31■□□□□ 0.84
CD28-203ENST00000458610 BCAR3O75815 825 aa20.31■□□□□ 0.84
CD28-203ENST00000458610 ATP2B4P23634 1241 aa20.31■□□□□ 0.84
CD28-203ENST00000458610 AOC3Q16853 763 aa20.31■□□□□ 0.84
CD28-203ENST00000458610 TAF7LQ5H9L4 462 aa20.31■□□□□ 0.84
CD28-203ENST00000458610 ATF7IPQ6VMQ6 1270 aa20.31■□□□□ 0.84
CD28-203ENST00000458610 USP44Q9H0E7 712 aa20.31■□□□□ 0.84
CD28-203ENST00000458610 ZNRF3Q9ULT6 936 aa20.31■□□□□ 0.84
CD28-203ENST00000458610 KIF3CO14782 793 aa20.3■□□□□ 0.84
CD28-203ENST00000458610 ZKSCAN2Q63HK3 967 aa20.3■□□□□ 0.84
CD28-203ENST00000458610 GPC2Q8N158 579 aa20.3■□□□□ 0.84
CD28-203ENST00000458610 TBC1D16Q8TBP0 767 aa20.3■□□□□ 0.84
CD28-203ENST00000458610 SUCLG2Q96I99 432 aa20.3■□□□□ 0.84
CD28-203ENST00000458610 MINPP1Q9UNW1 487 aa20.3■□□□□ 0.84
CD28-203ENST00000458610 CCDC88AQ3V6T2 1871 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms