RNA–Protein interactions for RNA: ENST00000457745.1

RIF1-208, Transcript of replication timing regulatory factor 1, human

TSL 1 (best)

Gene RIF1, Length 1,006 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-208	ENST00000457745	TBC1D9B	Q66K14	1250 aa		10.9	□□□□□ -0.66
RIF1-208	ENST00000457745	SLC51A	Q86UW1	340 aa		10.9	□□□□□ -0.66
RIF1-208	ENST00000457745	CCDC191	Q8NCU4	936 aa		10.9	□□□□□ -0.66
RIF1-208	ENST00000457745	CCDC85A	Q96PX6	553 aa	Predicted RBP	10.9	□□□□□ -0.66
RIF1-208	ENST00000457745	CHMP4B	Q9H444	224 aa	Known RBP	10.9	□□□□□ -0.66
RIF1-208	ENST00000457745	ANO8	Q9HCE9	1232 aa	Predicted RBP	10.9	□□□□□ -0.66
RIF1-208	ENST00000457745	SPEF2	Q9C093	1822 aa		10.9	□□□□□ -0.66
RIF1-208	ENST00000457745	LRP5	O75197	1615 aa		10.9	□□□□□ -0.66
RIF1-208	ENST00000457745	NTSR2	O95665	410 aa		10.89	□□□□□ -0.67
RIF1-208	ENST00000457745	APBA3	O96018	575 aa		10.89	□□□□□ -0.67
RIF1-208	ENST00000457745	PCCA	P05165	728 aa	Predicted RBP	10.89	□□□□□ -0.67
RIF1-208	ENST00000457745	C8orf34	Q49A92	452 aa		10.89	□□□□□ -0.67
RIF1-208	ENST00000457745	LMBR1L	Q6UX01	489 aa		10.89	□□□□□ -0.67
RIF1-208	ENST00000457745	CCDC24	Q8N4L8	307 aa		10.89	□□□□□ -0.67
RIF1-208	ENST00000457745	GCC1	Q96CN9	775 aa		10.89	□□□□□ -0.67
RIF1-208	ENST00000457745	ZNF594	Q96JF6	807 aa	Predicted RBP	10.89	□□□□□ -0.67
RIF1-208	ENST00000457745	SASH1	O94885	1247 aa		10.88	□□□□□ -0.67
RIF1-208	ENST00000457745	NUTM1	Q86Y26	1132 aa		10.88	□□□□□ -0.67
RIF1-208	ENST00000457745	PLEKHM2	Q8IWE5	1019 aa		10.88	□□□□□ -0.67
RIF1-208	ENST00000457745	PUS3	Q9BZE2	481 aa	Known RBP	10.88	□□□□□ -0.67
RIF1-208	ENST00000457745	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.88	□□□□□ -0.67
RIF1-208	ENST00000457745	IL1RAPL2	Q9NP60	686 aa		10.88	□□□□□ -0.67
RIF1-208	ENST00000457745	NARF	Q9UHQ1	456 aa		10.88	□□□□□ -0.67
RIF1-208	ENST00000457745	USP42	Q9H9J4	1324 aa	Known RBP	10.87	□□□□□ -0.67
RIF1-208	ENST00000457745	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.87	□□□□□ -0.67
RIF1-208	ENST00000457745	SURF6	O75683	361 aa	Known RBP	10.87	□□□□□ -0.67
RIF1-208	ENST00000457745	HCLS1	P14317	486 aa	Predicted RBP	10.87	□□□□□ -0.67
RIF1-208	ENST00000457745	GSPT1	P15170	499 aa	Known RBP	10.87	□□□□□ -0.67
RIF1-208	ENST00000457745	PTPN12	Q05209	780 aa	Known RBP	10.87	□□□□□ -0.67
RIF1-208	ENST00000457745	EZH2	Q15910	746 aa	Known RBP	10.87	□□□□□ -0.67
RIF1-208	ENST00000457745	FAM161A	Q3B820	660 aa		10.87	□□□□□ -0.67
RIF1-208	ENST00000457745	BICDL1	Q6ZP65	573 aa		10.87	□□□□□ -0.67
RIF1-208	ENST00000457745	DEFB132	Q7Z7B7	95 aa		10.87	□□□□□ -0.67
RIF1-208	ENST00000457745	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	10.87	□□□□□ -0.67
RIF1-208	ENST00000457745	SIL1	Q9H173	461 aa		10.87	□□□□□ -0.67
RIF1-208	ENST00000457745	NOP58	Q9Y2X3	529 aa	Known RBP	10.87	□□□□□ -0.67
RIF1-208	ENST00000457745		A0A1B0GUL6	1792 aa		10.87	□□□□□ -0.67
RIF1-208	ENST00000457745	CDHR2	Q9BYE9	1310 aa		10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	RIC1	Q4ADV7	1423 aa		10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	PLSCR1	O15162	318 aa		10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	SEC24B	O95487	1268 aa		10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	CLCN6	P51797	869 aa		10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	EN1	Q05925	392 aa	Predicted RBP	10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	ERFE	Q4G0M1	354 aa		10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	ATG9A	Q7Z3C6	839 aa		10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	RHPN1	Q8TCX5	695 aa		10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	AK7	Q96M32	723 aa		10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	CAMKK2	Q96RR4	588 aa		10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	PLA2G12B	Q9BX93	195 aa		10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	TLR7	Q9NYK1	1049 aa	Known RBP	10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	NIP7	Q9Y221	180 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	RTCB	Q9Y3I0	505 aa	Known RBP	10.86	□□□□□ -0.67
RIF1-208	ENST00000457745	HMMR	O75330	724 aa		10.85	□□□□□ -0.67
RIF1-208	ENST00000457745	CSF1R	P07333	972 aa		10.85	□□□□□ -0.67
RIF1-208	ENST00000457745	LRRC24	Q50LG9	513 aa		10.85	□□□□□ -0.67
RIF1-208	ENST00000457745	SLC27A3	Q5K4L6	730 aa		10.85	□□□□□ -0.67
RIF1-208	ENST00000457745	PDGFD	Q9GZP0	370 aa	Predicted RBP	10.85	□□□□□ -0.67
RIF1-208	ENST00000457745	GREM2	Q9H772	168 aa		10.85	□□□□□ -0.67
RIF1-208	ENST00000457745	TRMT112	Q9UI30	125 aa	Known RBP	10.85	□□□□□ -0.67
RIF1-208	ENST00000457745	CARMIL3	Q8ND23	1372 aa		10.85	□□□□□ -0.67
RIF1-208	ENST00000457745	ANKRD31	Q8N7Z5	1873 aa		10.85	□□□□□ -0.67
RIF1-208	ENST00000457745	IRS4	O14654	1257 aa	Predicted RBP	10.84	□□□□□ -0.67
RIF1-208	ENST00000457745	GYS1	P13807	737 aa		10.84	□□□□□ -0.67
RIF1-208	ENST00000457745	DDR1	Q08345	913 aa		10.84	□□□□□ -0.67
RIF1-208	ENST00000457745	NFIX	Q14938	502 aa		10.84	□□□□□ -0.67
RIF1-208	ENST00000457745	HSP90AB3P	Q58FF7	597 aa		10.84	□□□□□ -0.67
RIF1-208	ENST00000457745	COL23A1	Q86Y22	540 aa	Predicted RBP	10.84	□□□□□ -0.67
RIF1-208	ENST00000457745	RASEF	Q8IZ41	740 aa		10.84	□□□□□ -0.67
RIF1-208	ENST00000457745	TTLL11	Q8NHH1	800 aa		10.84	□□□□□ -0.67
RIF1-208	ENST00000457745	COPRS	Q9NQ92	184 aa		10.84	□□□□□ -0.67
RIF1-208	ENST00000457745	PNPLA7	Q6ZV29	1317 aa		10.84	□□□□□ -0.67
RIF1-208	ENST00000457745	NUBP1	P53384	320 aa		10.83	□□□□□ -0.68
RIF1-208	ENST00000457745	CTSW	P56202	376 aa		10.83	□□□□□ -0.68
RIF1-208	ENST00000457745	SPOCK2	Q92563	424 aa		10.83	□□□□□ -0.68
RIF1-208	ENST00000457745	EAF2	Q96CJ1	260 aa	Predicted RBP	10.83	□□□□□ -0.68
RIF1-208	ENST00000457745	UTP14A	Q9BVJ6	771 aa	Known RBP	10.83	□□□□□ -0.68
RIF1-208	ENST00000457745	BACH2	Q9BYV9	841 aa		10.83	□□□□□ -0.68
RIF1-208	ENST00000457745	LRRCC1	Q9C099	1032 aa		10.83	□□□□□ -0.68
RIF1-208	ENST00000457745	SEC31B	Q9NQW1	1179 aa		10.83	□□□□□ -0.68
RIF1-208	ENST00000457745	CHMP3	Q9Y3E7	222 aa		10.83	□□□□□ -0.68
RIF1-208	ENST00000457745	SH3TC1	Q8TE82	1336 aa		10.83	□□□□□ -0.68
RIF1-208	ENST00000457745	QSER1	Q2KHR3	1735 aa		10.82	□□□□□ -0.68
RIF1-208	ENST00000457745	NRXN2	Q9P2S2	1712 aa		10.82	□□□□□ -0.68
RIF1-208	ENST00000457745	TFCP2	Q12800	502 aa		10.82	□□□□□ -0.68
RIF1-208	ENST00000457745	TRAPPC3L	Q5T215	181 aa		10.82	□□□□□ -0.68
RIF1-208	ENST00000457745	COL11A2	P13942	1736 aa	Predicted RBP	10.81	□□□□□ -0.68
RIF1-208	ENST00000457745	WTIP	A6NIX2	430 aa	Predicted RBP	10.81	□□□□□ -0.68
RIF1-208	ENST00000457745	PDE1A	P54750	535 aa		10.81	□□□□□ -0.68
RIF1-208	ENST00000457745	TTC22	Q5TAA0	569 aa		10.81	□□□□□ -0.68
RIF1-208	ENST00000457745	DCAF8	Q5TAQ9	597 aa		10.81	□□□□□ -0.68
RIF1-208	ENST00000457745	CLEC4G	Q6UXB4	293 aa		10.81	□□□□□ -0.68
RIF1-208	ENST00000457745	PI4K2B	Q8TCG2	481 aa		10.81	□□□□□ -0.68
RIF1-208	ENST00000457745	FAM212A	Q96EL1	285 aa		10.81	□□□□□ -0.68
RIF1-208	ENST00000457745	ZNF609	O15014	1411 aa		10.81	□□□□□ -0.68
RIF1-208	ENST00000457745	SNAP23	O00161	211 aa		10.8	□□□□□ -0.68
RIF1-208	ENST00000457745	PDE8A	O60658	829 aa		10.8	□□□□□ -0.68
RIF1-208	ENST00000457745	RAB11FIP3	O75154	756 aa		10.8	□□□□□ -0.68
RIF1-208	ENST00000457745	ITGA6	P23229	1130 aa		10.8	□□□□□ -0.68
RIF1-208	ENST00000457745	SSFA2	P28290	1259 aa		10.8	□□□□□ -0.68
RIF1-208	ENST00000457745	TM4SF1	P30408	202 aa		10.8	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 19 ms