RNA–Protein interactions for RNA: ENST00000451893.5

C9orf3-208, Transcript of chromosome 9 open reading frame 3, human

TSL 3

Gene C9orf3, Length 514 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C9orf3-208	ENST00000451893	SP8	Q8IXZ3	490 aa		27.81	■■■□□ 2.04
C9orf3-208	ENST00000451893	TSR2	Q969E8	191 aa	Known RBP	27.81	■■■□□ 2.04
C9orf3-208	ENST00000451893	SNED1	Q8TER0	1413 aa		27.81	■■■□□ 2.04
C9orf3-208	ENST00000451893	POTEI	P0CG38	1075 aa		27.8	■■■□□ 2.04
C9orf3-208	ENST00000451893	POTEJ	P0CG39	1038 aa		27.8	■■■□□ 2.04
C9orf3-208	ENST00000451893	TMC4	Q7Z404	712 aa		27.8	■■■□□ 2.04
C9orf3-208	ENST00000451893	PNMA8A	Q86V59	439 aa	Predicted RBP	27.8	■■■□□ 2.04
C9orf3-208	ENST00000451893	TAF1	P21675	1872 aa		27.79	■■■□□ 2.04
C9orf3-208	ENST00000451893	IRS4	O14654	1257 aa	Predicted RBP	27.79	■■■□□ 2.04
C9orf3-208	ENST00000451893	CENPB	P07199	599 aa	Predicted RBP	27.79	■■■□□ 2.04
C9orf3-208	ENST00000451893	CCDC27	Q2M243	656 aa		27.79	■■■□□ 2.04
C9orf3-208	ENST00000451893	VPS33B	Q9H267	617 aa		27.79	■■■□□ 2.04
C9orf3-208	ENST00000451893	SALL2	Q9Y467	1007 aa	Predicted RBP	27.79	■■■□□ 2.04
C9orf3-208	ENST00000451893	SLC51A	Q86UW1	340 aa		27.78	■■■□□ 2.04
C9orf3-208	ENST00000451893	WWC1	Q8IX03	1113 aa		27.78	■■■□□ 2.04
C9orf3-208	ENST00000451893	TRIM28	Q13263	835 aa	Known RBP	27.76	■■■□□ 2.03
C9orf3-208	ENST00000451893	NEXN	Q0ZGT2	675 aa		27.75	■■■□□ 2.03
C9orf3-208	ENST00000451893	TWISTNB	Q3B726	338 aa	Predicted RBP	27.75	■■■□□ 2.03
C9orf3-208	ENST00000451893	TSPYL6	Q8N831	410 aa		27.75	■■■□□ 2.03
C9orf3-208	ENST00000451893	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	27.75	■■■□□ 2.03
C9orf3-208	ENST00000451893	CWC25	Q9NXE8	425 aa	Predicted RBP	27.75	■■■□□ 2.03
C9orf3-208	ENST00000451893	CCDC191	Q8NCU4	936 aa		27.74	■■■□□ 2.03
C9orf3-208	ENST00000451893	YTHDC1	Q96MU7	727 aa	Known RBP	27.74	■■■□□ 2.03
C9orf3-208	ENST00000451893	COL4A5	P29400	1685 aa		27.73	■■■□□ 2.03
C9orf3-208	ENST00000451893	SF3B3	Q15393	1217 aa	Known RBP	27.73	■■■□□ 2.03
C9orf3-208	ENST00000451893	ZNRF3	Q9ULT6	936 aa		27.73	■■■□□ 2.03
C9orf3-208	ENST00000451893	MAP3K2	Q9Y2U5	619 aa		27.73	■■■□□ 2.03
C9orf3-208	ENST00000451893	IL16	Q14005	1332 aa		27.72	■■■□□ 2.03
C9orf3-208	ENST00000451893	METTL22	Q9BUU2	404 aa	Predicted RBP	27.72	■■■□□ 2.03
C9orf3-208	ENST00000451893	RTFDC1	Q9BY42	306 aa	Predicted RBP	27.72	■■■□□ 2.03
C9orf3-208	ENST00000451893	CREBZF	Q9NS37	354 aa		27.72	■■■□□ 2.03
C9orf3-208	ENST00000451893	NSFL1C	Q9UNZ2	370 aa	Known RBP	27.72	■■■□□ 2.03
C9orf3-208	ENST00000451893	FAM9B	Q8IZU0	186 aa		27.71	■■■□□ 2.03
C9orf3-208	ENST00000451893	CELF1	Q92879	486 aa	Known RBP	27.71	■■■□□ 2.03
C9orf3-208	ENST00000451893	BCL2L13	Q9BXK5	485 aa		27.71	■■■□□ 2.03
C9orf3-208	ENST00000451893	C6orf229	H3BNL8	230 aa		27.7	■■■□□ 2.02
C9orf3-208	ENST00000451893	KIAA2012	Q0VF49	1180 aa		27.7	■■■□□ 2.02
C9orf3-208	ENST00000451893	CCDC152	Q4G0S7	254 aa		27.7	■■■□□ 2.02
C9orf3-208	ENST00000451893	PCCA	P05165	728 aa	Predicted RBP	27.69	■■■□□ 2.02
C9orf3-208	ENST00000451893	TNIP1	Q15025	636 aa		27.69	■■■□□ 2.02
C9orf3-208	ENST00000451893	CIAPIN1	Q6FI81	312 aa		27.69	■■■□□ 2.02
C9orf3-208	ENST00000451893	KSR2	Q6VAB6	950 aa		27.69	■■■□□ 2.02
C9orf3-208	ENST00000451893	PI4KAP2	A4QPH2	592 aa		27.68	■■■□□ 2.02
C9orf3-208	ENST00000451893	PDE8A	O60658	829 aa		27.68	■■■□□ 2.02
C9orf3-208	ENST00000451893	WASHC4	Q2M389	1173 aa		27.68	■■■□□ 2.02
C9orf3-208	ENST00000451893	MAP1S	Q66K74	1059 aa	Predicted RBP	27.68	■■■□□ 2.02
C9orf3-208	ENST00000451893	PI4KAP1	Q8N8J0	262 aa		27.68	■■■□□ 2.02
C9orf3-208	ENST00000451893	JMY	Q8N9B5	988 aa		27.68	■■■□□ 2.02
C9orf3-208	ENST00000451893	EYA3	Q99504	573 aa		27.68	■■■□□ 2.02
C9orf3-208	ENST00000451893	LRRC37A	A6NMS7	1700 aa		27.67	■■■□□ 2.02
C9orf3-208	ENST00000451893		G3V3G9	751 aa		27.67	■■■□□ 2.02
C9orf3-208	ENST00000451893	SLC4A2	P04920	1241 aa		27.67	■■■□□ 2.02
C9orf3-208	ENST00000451893	RPS8	P62241	208 aa	Known RBP	27.67	■■■□□ 2.02
C9orf3-208	ENST00000451893	NCBP3	Q53F19	620 aa	Known RBP	27.67	■■■□□ 2.02
C9orf3-208	ENST00000451893	DCAF8	Q5TAQ9	597 aa		27.67	■■■□□ 2.02
C9orf3-208	ENST00000451893	CNTROB	Q8N137	903 aa		27.67	■■■□□ 2.02
C9orf3-208	ENST00000451893	JARID2	Q92833	1246 aa	Predicted RBP	27.67	■■■□□ 2.02
C9orf3-208	ENST00000451893	CCDC85A	Q96PX6	553 aa	Predicted RBP	27.67	■■■□□ 2.02
C9orf3-208	ENST00000451893	MKRN1	Q9UHC7	482 aa	Known RBP	27.67	■■■□□ 2.02
C9orf3-208	ENST00000451893	RAD17	O75943	681 aa		27.66	■■■□□ 2.02
C9orf3-208	ENST00000451893	EPS15	P42566	896 aa		27.66	■■■□□ 2.02
C9orf3-208	ENST00000451893	SCNN1D	P51172	638 aa		27.66	■■■□□ 2.02
C9orf3-208	ENST00000451893	FANCI	Q9NVI1	1328 aa		27.66	■■■□□ 2.02
C9orf3-208	ENST00000451893	TMEM88B	A6NKF7	163 aa		27.65	■■■□□ 2.02
C9orf3-208	ENST00000451893	RIMBP2	O15034	1052 aa		27.65	■■■□□ 2.02
C9orf3-208	ENST00000451893	CXCL9	Q07325	125 aa		27.65	■■■□□ 2.02
C9orf3-208	ENST00000451893	USP50	Q70EL3	339 aa	Predicted RBP	27.65	■■■□□ 2.02
C9orf3-208	ENST00000451893	WDR63	Q8IWG1	891 aa		27.65	■■■□□ 2.02
C9orf3-208	ENST00000451893	ANKIB1	Q9P2G1	1089 aa		27.65	■■■□□ 2.02
C9orf3-208	ENST00000451893	PASK	Q96RG2	1323 aa		27.64	■■■□□ 2.01
C9orf3-208	ENST00000451893	ADAMTSL1	Q8N6G6	1762 aa		27.63	■■■□□ 2.01
C9orf3-208	ENST00000451893	CACNA1F	O60840	1977 aa		27.63	■■■□□ 2.01
C9orf3-208	ENST00000451893	GPSM2	P81274	684 aa		27.63	■■■□□ 2.01
C9orf3-208	ENST00000451893	FKBP5	Q13451	457 aa	Predicted RBP	27.63	■■■□□ 2.01
C9orf3-208	ENST00000451893	ADARB2	Q9NS39	739 aa	Known RBP	27.63	■■■□□ 2.01
C9orf3-208	ENST00000451893	GPRC5D	Q9NZD1	345 aa		27.63	■■■□□ 2.01
C9orf3-208	ENST00000451893	LTBP1	Q14766	1721 aa		27.62	■■■□□ 2.01
C9orf3-208	ENST00000451893	GMPS	P49915	693 aa	Predicted RBP	27.62	■■■□□ 2.01
C9orf3-208	ENST00000451893	ANKRD18A	Q8IVF6	992 aa		27.62	■■■□□ 2.01
C9orf3-208	ENST00000451893	SEC31B	Q9NQW1	1179 aa		27.62	■■■□□ 2.01
C9orf3-208	ENST00000451893	MYH3	P11055	1940 aa		27.62	■■■□□ 2.01
C9orf3-208	ENST00000451893	MYH16	Q9H6N6	1097 aa		27.61	■■■□□ 2.01
C9orf3-208	ENST00000451893	DBNDD1	Q9H9R9	158 aa		27.61	■■■□□ 2.01
C9orf3-208	ENST00000451893	ITGBL1	O95965	494 aa	Predicted RBP	27.6	■■■□□ 2.01
C9orf3-208	ENST00000451893	FLII	Q13045	1269 aa		27.6	■■■□□ 2.01
C9orf3-208	ENST00000451893	CDC5L	Q99459	802 aa	Known RBP	27.6	■■■□□ 2.01
C9orf3-208	ENST00000451893	ZC3H12C	Q9C0D7	883 aa	Known RBP	27.6	■■■□□ 2.01
C9orf3-208	ENST00000451893	ABT1	Q9ULW3	272 aa	Known RBP	27.6	■■■□□ 2.01
C9orf3-208	ENST00000451893	CDHR2	Q9BYE9	1310 aa		27.6	■■■□□ 2.01
C9orf3-208	ENST00000451893	DUOX1	Q9NRD9	1551 aa		27.6	■■■□□ 2.01
C9orf3-208	ENST00000451893	UFL1	O94874	794 aa		27.59	■■■□□ 2.01
C9orf3-208	ENST00000451893	CWF19L2	Q2TBE0	894 aa	Known RBP	27.59	■■■□□ 2.01
C9orf3-208	ENST00000451893	GGA1	Q9UJY5	639 aa		27.59	■■■□□ 2.01
C9orf3-208	ENST00000451893		H7C1D1	291 aa		27.58	■■■□□ 2.01
C9orf3-208	ENST00000451893	CTSW	P56202	376 aa		27.58	■■■□□ 2.01
C9orf3-208	ENST00000451893	EXOSC9	Q06265	439 aa	Known RBP	27.58	■■■□□ 2.01
C9orf3-208	ENST00000451893	IFFO2	Q5TF58	517 aa		27.58	■■■□□ 2.01
C9orf3-208	ENST00000451893	G2E3	Q7L622	706 aa		27.58	■■■□□ 2.01
C9orf3-208	ENST00000451893	POLL	Q9UGP5	575 aa		27.58	■■■□□ 2.01
C9orf3-208	ENST00000451893	NEURL1B	A8MQ27	555 aa		27.57	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms