RNA–Protein interactions for RNA: ENST00000449234.1

RFX3-208, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-208	ENST00000449234	AIMP1	Q12904	312 aa	Known RBP	13.68	□□□□□ -0.22
RFX3-208	ENST00000449234	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.68	□□□□□ -0.22
RFX3-208	ENST00000449234	NOL8	Q76FK4	1167 aa	Known RBP	13.68	□□□□□ -0.22
RFX3-208	ENST00000449234	NFATC2IP	Q8NCF5	419 aa		13.68	□□□□□ -0.22
RFX3-208	ENST00000449234	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.68	□□□□□ -0.22
RFX3-208	ENST00000449234	MYD88	Q99836	296 aa		13.68	□□□□□ -0.22
RFX3-208	ENST00000449234	FSD1	Q9BTV5	496 aa		13.68	□□□□□ -0.22
RFX3-208	ENST00000449234	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.68	□□□□□ -0.22
RFX3-208	ENST00000449234		H7C1W4	665 aa		13.67	□□□□□ -0.22
RFX3-208	ENST00000449234	GADD45B	O75293	160 aa	Predicted RBP	13.67	□□□□□ -0.22
RFX3-208	ENST00000449234	TAF5L	O75529	589 aa		13.67	□□□□□ -0.22
RFX3-208	ENST00000449234	PTPN12	Q05209	780 aa	Known RBP	13.67	□□□□□ -0.22
RFX3-208	ENST00000449234	ME3	Q16798	604 aa		13.67	□□□□□ -0.22
RFX3-208	ENST00000449234	ADCK5	Q3MIX3	580 aa		13.67	□□□□□ -0.22
RFX3-208	ENST00000449234	TNNI3K	Q59H18	835 aa		13.67	□□□□□ -0.22
RFX3-208	ENST00000449234	LARP1B	Q659C4	914 aa	Known RBP	13.67	□□□□□ -0.22
RFX3-208	ENST00000449234	CADPS2	Q86UW7	1296 aa		13.67	□□□□□ -0.22
RFX3-208	ENST00000449234	ZNF496	Q96IT1	587 aa	Predicted RBP	13.67	□□□□□ -0.22
RFX3-208	ENST00000449234	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.67	□□□□□ -0.22
RFX3-208	ENST00000449234	FBXO3	Q9UK99	471 aa		13.67	□□□□□ -0.22
RFX3-208	ENST00000449234	FPGT-TNNI3K	V9GXZ4	949 aa		13.67	□□□□□ -0.22
RFX3-208	ENST00000449234	PRAMEF22	A3QJZ6	481 aa		13.66	□□□□□ -0.22
RFX3-208	ENST00000449234	ERVV-2	B6SEH9	535 aa		13.66	□□□□□ -0.22
RFX3-208	ENST00000449234	KRT85	P78386	507 aa		13.66	□□□□□ -0.22
RFX3-208	ENST00000449234	CCDC83	Q8IWF9	413 aa		13.66	□□□□□ -0.22
RFX3-208	ENST00000449234	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
RFX3-208	ENST00000449234	RBM33	Q96EV2	1170 aa	Known RBP	13.66	□□□□□ -0.22
RFX3-208	ENST00000449234	HAUS7	Q99871	368 aa		13.66	□□□□□ -0.22
RFX3-208	ENST00000449234	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.66	□□□□□ -0.22
RFX3-208	ENST00000449234	CNPY2	Q9Y2B0	182 aa		13.66	□□□□□ -0.22
RFX3-208	ENST00000449234	PKD1L3	Q7Z443	1732 aa		13.65	□□□□□ -0.22
RFX3-208	ENST00000449234	RRP9	O43818	475 aa	Known RBP	13.65	□□□□□ -0.22
RFX3-208	ENST00000449234	CASP7	P55210	303 aa		13.65	□□□□□ -0.22
RFX3-208	ENST00000449234	CABP4	P57796	275 aa		13.65	□□□□□ -0.22
RFX3-208	ENST00000449234	ZC3H6	P61129	1189 aa	Known RBP	13.65	□□□□□ -0.22
RFX3-208	ENST00000449234	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.65	□□□□□ -0.22
RFX3-208	ENST00000449234	MCMDC2	Q4G0Z9	681 aa		13.65	□□□□□ -0.22
RFX3-208	ENST00000449234	FAM227B	Q96M60	508 aa		13.65	□□□□□ -0.22
RFX3-208	ENST00000449234	LLPH	Q9BRT6	129 aa	Known RBP	13.65	□□□□□ -0.22
RFX3-208	ENST00000449234	BOLA2	Q9H3K6	86 aa		13.65	□□□□□ -0.22
RFX3-208	ENST00000449234	HELLS	Q9NRZ9	838 aa		13.65	□□□□□ -0.22
RFX3-208	ENST00000449234	XPC	Q01831	940 aa	Predicted RBP	13.64	□□□□□ -0.23
RFX3-208	ENST00000449234	SLC39A6	Q13433	755 aa		13.64	□□□□□ -0.23
RFX3-208	ENST00000449234	NKX1-1	Q15270	411 aa	Predicted RBP	13.64	□□□□□ -0.23
RFX3-208	ENST00000449234	ATL3	Q6DD88	541 aa		13.64	□□□□□ -0.23
RFX3-208	ENST00000449234	RGS22	Q8NE09	1264 aa		13.64	□□□□□ -0.23
RFX3-208	ENST00000449234	FUCA2	Q9BTY2	467 aa		13.64	□□□□□ -0.23
RFX3-208	ENST00000449234	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.64	□□□□□ -0.23
RFX3-208	ENST00000449234	TPCN1	Q9ULQ1	816 aa		13.64	□□□□□ -0.23
RFX3-208	ENST00000449234	KIF3A	Q9Y496	699 aa		13.64	□□□□□ -0.23
RFX3-208	ENST00000449234	USP16	Q9Y5T5	823 aa		13.64	□□□□□ -0.23
RFX3-208	ENST00000449234	TNS3	Q68CZ2	1445 aa		13.64	□□□□□ -0.23
RFX3-208	ENST00000449234	SPATA31A3	Q5VYP0	1347 aa		13.64	□□□□□ -0.23
RFX3-208	ENST00000449234	RGPD5	Q99666	1765 aa		13.63	□□□□□ -0.23
RFX3-208	ENST00000449234		A0A087WZG4	1122 aa		13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	CYP27B1	O15528	508 aa		13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	CIAO1	O76071	339 aa		13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	CAVIN2	O95810	425 aa		13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	CSB-PGBD3	P0DP91	1061 aa		13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	MYL6B	P14649	208 aa		13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	IL15	P40933	162 aa	Predicted RBP	13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	EPHA10	Q5JZY3	1008 aa		13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	KBTBD3	Q8NAB2	608 aa		13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	SP7	Q8TDD2	431 aa	Predicted RBP	13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	NEK1	Q96PY6	1258 aa		13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	USP25	Q9UHP3	1055 aa		13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	PARP4	Q9UKK3	1724 aa	Known RBP	13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	SH3TC1	Q8TE82	1336 aa		13.63	□□□□□ -0.23
RFX3-208	ENST00000449234	PALLD	Q8WX93	1383 aa		13.62	□□□□□ -0.23
RFX3-208	ENST00000449234		A0A0D9SFI3	127 aa		13.62	□□□□□ -0.23
RFX3-208	ENST00000449234	KDM4A	O75164	1064 aa		13.62	□□□□□ -0.23
RFX3-208	ENST00000449234	LARGE1	O95461	756 aa		13.62	□□□□□ -0.23
RFX3-208	ENST00000449234	CCDC192	P0DO97	292 aa		13.62	□□□□□ -0.23
RFX3-208	ENST00000449234	FBXL16	Q8N461	479 aa		13.62	□□□□□ -0.23
RFX3-208	ENST00000449234	CCDC191	Q8NCU4	936 aa		13.62	□□□□□ -0.23
RFX3-208	ENST00000449234	DSCC1	Q9BVC3	393 aa		13.62	□□□□□ -0.23
RFX3-208	ENST00000449234	DDX19A	Q9NUU7	478 aa	Known RBP	13.62	□□□□□ -0.23
RFX3-208	ENST00000449234	C5	P01031	1676 aa		13.62	□□□□□ -0.23
RFX3-208	ENST00000449234	MEGF6	O75095	1541 aa		13.61	□□□□□ -0.23
RFX3-208	ENST00000449234	PTMA	P06454	111 aa	Known RBP	13.61	□□□□□ -0.23
RFX3-208	ENST00000449234	DNM1	Q05193	864 aa	Known RBP	13.61	□□□□□ -0.23
RFX3-208	ENST00000449234	ST3GAL1	Q11201	340 aa		13.61	□□□□□ -0.23
RFX3-208	ENST00000449234	TFCP2	Q12800	502 aa		13.61	□□□□□ -0.23
RFX3-208	ENST00000449234	TRIM28	Q13263	835 aa	Known RBP	13.61	□□□□□ -0.23
RFX3-208	ENST00000449234	TOB2	Q14106	344 aa	Predicted RBP	13.61	□□□□□ -0.23
RFX3-208	ENST00000449234	CHAMP1	Q96JM3	812 aa		13.61	□□□□□ -0.23
RFX3-208	ENST00000449234	MAP7D2	Q96T17	732 aa		13.61	□□□□□ -0.23
RFX3-208	ENST00000449234	GDPD2	Q9HCC8	539 aa		13.61	□□□□□ -0.23
RFX3-208	ENST00000449234	DBNL	Q9UJU6	430 aa	Known RBP	13.61	□□□□□ -0.23
RFX3-208	ENST00000449234	LAMB4	A4D0S4	1761 aa		13.6	□□□□□ -0.23
RFX3-208	ENST00000449234	CPA1	P15085	419 aa		13.6	□□□□□ -0.23
RFX3-208	ENST00000449234	HMGN5	P82970	282 aa	Known RBP	13.6	□□□□□ -0.23
RFX3-208	ENST00000449234	FOXO4	P98177	505 aa		13.6	□□□□□ -0.23
RFX3-208	ENST00000449234	KIAA2012	Q0VF49	1180 aa		13.6	□□□□□ -0.23
RFX3-208	ENST00000449234	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.6	□□□□□ -0.23
RFX3-208	ENST00000449234	SIL1	Q9H173	461 aa		13.6	□□□□□ -0.23
RFX3-208	ENST00000449234	CWC25	Q9NXE8	425 aa	Predicted RBP	13.6	□□□□□ -0.23
RFX3-208	ENST00000449234	TLR7	Q9NYK1	1049 aa	Known RBP	13.6	□□□□□ -0.23
RFX3-208	ENST00000449234	CFAP45	Q9UL16	551 aa		13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms