RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 TNRC6CQ9HCJ0 1690 aaKnown RBP23.9■■□□□ 1.42
RPS28-202ENST00000449223 SERPINB2P05120 415 aa23.9■■□□□ 1.42
RPS28-202ENST00000449223 SF3B3Q15393 1217 aaKnown RBP23.9■■□□□ 1.42
RPS28-202ENST00000449223 FBXO3Q9UK99 471 aa23.9■■□□□ 1.42
RPS28-202ENST00000449223 PDZRN3Q9UPQ7 1066 aa23.9■■□□□ 1.42
RPS28-202ENST00000449223 EXOC6BQ9Y2D4 811 aa23.9■■□□□ 1.42
RPS28-202ENST00000449223 SURF6O75683 361 aaKnown RBP23.89■■□□□ 1.42
RPS28-202ENST00000449223 GTF2E1P29083 439 aaPredicted RBP23.89■■□□□ 1.42
RPS28-202ENST00000449223 FAM161AQ3B820 660 aa23.89■■□□□ 1.42
RPS28-202ENST00000449223 PRR5LQ6MZQ0 368 aa23.89■■□□□ 1.42
RPS28-202ENST00000449223 CCDC57Q2TAC2 916 aa23.89■■□□□ 1.41
RPS28-202ENST00000449223 CHD1LQ86WJ1 897 aa23.89■■□□□ 1.41
RPS28-202ENST00000449223 CCDC152Q4G0S7 254 aa23.88■■□□□ 1.41
RPS28-202ENST00000449223 GREM2Q9H772 168 aa23.88■■□□□ 1.41
RPS28-202ENST00000449223 PA2G4Q9UQ80 394 aaKnown RBP23.88■■□□□ 1.41
RPS28-202ENST00000449223 ITGA6P23229 1130 aa23.87■■□□□ 1.41
RPS28-202ENST00000449223 IFIT5Q13325 482 aaKnown RBP23.87■■□□□ 1.41
RPS28-202ENST00000449223 ERC1Q8IUD2 1116 aa23.87■■□□□ 1.41
RPS28-202ENST00000449223 CHMP3Q9Y3E7 222 aa23.87■■□□□ 1.41
RPS28-202ENST00000449223 ANKRD45Q5TZF3 282 aa23.86■■□□□ 1.41
RPS28-202ENST00000449223 ILDR2Q71H61 639 aa23.86■■□□□ 1.41
RPS28-202ENST00000449223 KIF1BPQ96EK5 621 aa23.86■■□□□ 1.41
RPS28-202ENST00000449223 NLRP3Q96P20 1036 aa23.86■■□□□ 1.41
RPS28-202ENST00000449223 LRRCC1Q9C099 1032 aa23.86■■□□□ 1.41
RPS28-202ENST00000449223 ANKRD31Q8N7Z5 1873 aa23.86■■□□□ 1.41
RPS28-202ENST00000449223 CIAO1O76071 339 aa23.85■■□□□ 1.41
RPS28-202ENST00000449223 MMP10P09238 476 aa23.85■■□□□ 1.41
RPS28-202ENST00000449223 ST5P78524 1137 aa23.85■■□□□ 1.41
RPS28-202ENST00000449223 ANKRD18BA2A2Z9 1011 aa23.84■■□□□ 1.41
RPS28-202ENST00000449223 KLRG2A4D1S0 409 aaPredicted RBP23.84■■□□□ 1.41
RPS28-202ENST00000449223 KLHDC4Q8TBB5 520 aa23.84■■□□□ 1.41
RPS28-202ENST00000449223 G3BP1Q13283 466 aaKnown RBP eCLIP23.84■■□□□ 1.41
RPS28-202ENST00000449223 C3orf67Q6ZVT6 689 aa23.84■■□□□ 1.41
RPS28-202ENST00000449223 RHPN1Q8TCX5 695 aa23.84■■□□□ 1.41
RPS28-202ENST00000449223 PARP3Q9Y6F1 533 aa23.84■■□□□ 1.41
RPS28-202ENST00000449223 NPHP1O15259 732 aa23.83■■□□□ 1.41
RPS28-202ENST00000449223 CRY2Q49AN0 593 aa23.83■■□□□ 1.41
RPS28-202ENST00000449223 PDGFDQ9GZP0 370 aaPredicted RBP23.83■■□□□ 1.41
RPS28-202ENST00000449223 EYA2O00167 538 aa23.82■■□□□ 1.4
RPS28-202ENST00000449223 ATG9AQ7Z3C6 839 aa23.82■■□□□ 1.4
RPS28-202ENST00000449223 LNPKQ9C0E8 428 aa23.82■■□□□ 1.4
RPS28-202ENST00000449223 SASH1O94885 1247 aa23.81■■□□□ 1.4
RPS28-202ENST00000449223 IL15P40933 162 aaPredicted RBP23.81■■□□□ 1.4
RPS28-202ENST00000449223 MSL1Q68DK7 614 aa23.81■■□□□ 1.4
RPS28-202ENST00000449223 CCDC85AQ96PX6 553 aaPredicted RBP23.81■■□□□ 1.4
RPS28-202ENST00000449223 PDE4AP27815 886 aa23.8■■□□□ 1.4
RPS28-202ENST00000449223 BRIP1Q9BX63 1249 aa23.8■■□□□ 1.4
RPS28-202ENST00000449223 SIL1Q9H173 461 aa23.8■■□□□ 1.4
RPS28-202ENST00000449223 ZBTB47Q9UFB7 747 aaPredicted RBP23.8■■□□□ 1.4
RPS28-202ENST00000449223 OS9Q13438 667 aaPredicted RBP23.79■■□□□ 1.4
RPS28-202ENST00000449223 ZNF594Q96JF6 807 aaPredicted RBP23.79■■□□□ 1.4
RPS28-202ENST00000449223 COL4A1P02462 1669 aa23.79■■□□□ 1.4
RPS28-202ENST00000449223 CDC5LQ99459 802 aaKnown RBP23.79■■□□□ 1.4
RPS28-202ENST00000449223 RIPOR2Q9Y4F9 1068 aa23.79■■□□□ 1.4
RPS28-202ENST00000449223 SALL3Q9BXA9 1300 aa23.78■■□□□ 1.4
RPS28-202ENST00000449223 SPEF2Q9C093 1822 aa23.78■■□□□ 1.4
RPS28-202ENST00000449223 APBB1O00213 710 aa23.78■■□□□ 1.4
RPS28-202ENST00000449223 SMARCA5O60264 1052 aaPredicted RBP23.78■■□□□ 1.4
RPS28-202ENST00000449223 TAF7LQ5H9L4 462 aa23.78■■□□□ 1.4
RPS28-202ENST00000449223 CCDC24Q8N4L8 307 aa23.78■■□□□ 1.4
RPS28-202ENST00000449223 SEC31BQ9NQW1 1179 aa23.78■■□□□ 1.4
RPS28-202ENST00000449223 LRRC24Q50LG9 513 aa23.77■■□□□ 1.4
RPS28-202ENST00000449223 SKAP1Q86WV1 359 aa23.77■■□□□ 1.4
RPS28-202ENST00000449223 GPR108Q9NPR9 543 aa23.77■■□□□ 1.4
RPS28-202ENST00000449223 TAF1P21675 1872 aa23.76■■□□□ 1.39
RPS28-202ENST00000449223 LDHAL6AQ6ZMR3 332 aa23.76■■□□□ 1.39
RPS28-202ENST00000449223 PUS3Q9BZE2 481 aaKnown RBP23.76■■□□□ 1.39
RPS28-202ENST00000449223 MTFR1LQ9H019 292 aa23.76■■□□□ 1.39
RPS28-202ENST00000449223 A0A1B0GUL6 1792 aa23.76■■□□□ 1.39
RPS28-202ENST00000449223 KIF13BQ9NQT8 1826 aa23.76■■□□□ 1.39
RPS28-202ENST00000449223 HOXA10P31260 410 aaPredicted RBP23.75■■□□□ 1.39
RPS28-202ENST00000449223 CLASRPQ8N2M8 674 aaKnown RBP23.75■■□□□ 1.39
RPS28-202ENST00000449223 COL11A2P13942 1736 aaPredicted RBP23.75■■□□□ 1.39
RPS28-202ENST00000449223 IGHMBP2P38935 993 aaKnown RBP23.74■■□□□ 1.39
RPS28-202ENST00000449223 R3HDM1Q15032 1099 aaKnown RBP23.74■■□□□ 1.39
RPS28-202ENST00000449223 OSBPL3Q9H4L5 887 aa23.74■■□□□ 1.39
RPS28-202ENST00000449223 IL1RAPL2Q9NP60 686 aa23.74■■□□□ 1.39
RPS28-202ENST00000449223 C10orf71Q711Q0 1435 aa23.74■■□□□ 1.39
RPS28-202ENST00000449223 DDX46Q7L014 1031 aaKnown RBP23.74■■□□□ 1.39
RPS28-202ENST00000449223 PLEKHM2Q8IWE5 1019 aa23.74■■□□□ 1.39
RPS28-202ENST00000449223 BSDC1Q9NW68 430 aaPredicted RBP23.74■■□□□ 1.39
RPS28-202ENST00000449223 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.74■■□□□ 1.39
RPS28-202ENST00000449223 MROH5Q6ZUA9 1318 aa23.73■■□□□ 1.39
RPS28-202ENST00000449223 PDE6BP35913 854 aa23.73■■□□□ 1.39
RPS28-202ENST00000449223 RGS3P49796 1198 aa23.73■■□□□ 1.39
RPS28-202ENST00000449223 TFCP2Q12800 502 aa23.73■■□□□ 1.39
RPS28-202ENST00000449223 ANKRD18AQ8IVF6 992 aa23.73■■□□□ 1.39
RPS28-202ENST00000449223 VGLL2Q8N8G2 317 aa23.73■■□□□ 1.39
RPS28-202ENST00000449223 MPHOSPH8Q99549 860 aa23.73■■□□□ 1.39
RPS28-202ENST00000449223 C16orf71Q8IYS4 520 aaPredicted RBP23.72■■□□□ 1.39
RPS28-202ENST00000449223 CNNM1Q9NRU3 951 aa23.72■■□□□ 1.39
RPS28-202ENST00000449223 STAP2Q9UGK3 403 aa23.72■■□□□ 1.39
RPS28-202ENST00000449223 ZNF609O15014 1411 aa23.71■■□□□ 1.39
RPS28-202ENST00000449223 RPS8P62241 208 aaKnown RBP23.71■■□□□ 1.39
RPS28-202ENST00000449223 GRAPQ13588 217 aa23.71■■□□□ 1.39
RPS28-202ENST00000449223 GRAPLQ8TC17 118 aaPredicted RBP23.71■■□□□ 1.39
RPS28-202ENST00000449223 RPGRQ92834 1020 aaKnown RBP23.71■■□□□ 1.39
RPS28-202ENST00000449223 CELF1Q92879 486 aaKnown RBP23.71■■□□□ 1.39
RPS28-202ENST00000449223 EAF2Q96CJ1 260 aaPredicted RBP23.71■■□□□ 1.39
RPS28-202ENST00000449223 CRAMP1Q96RY5 1269 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms