RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 QRICH2Q9H0J4 1663 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 MFSD6Q6ZSS7 791 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 FERMT3Q86UX7 667 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 KLHDC4Q8TBB5 520 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 ZC3H12CQ9C0D7 883 aaKnown RBP8.7□□□□□ -1.02
SYNE1-213ENST00000448038 CFAP45Q9UL16 551 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 BCORL1Q5H9F3 1711 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 LETM1O95202 739 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-213ENST00000448038 APBA3O96018 575 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 SLC4A8Q2Y0W8 1093 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 NAA16Q6N069 864 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-213ENST00000448038 RNF214Q8ND24 703 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 SPATA32Q96LK8 384 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 TBC1D2Q9BYX2 928 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 ANKRD2Q9GZV1 360 aa8.7□□□□□ -1.02
SYNE1-213ENST00000448038 GOLGA8BA8MQT2 603 aa8.69□□□□□ -1.02
SYNE1-213ENST00000448038 POLD1P28340 1107 aa8.69□□□□□ -1.02
SYNE1-213ENST00000448038 PDE4BQ07343 736 aa8.69□□□□□ -1.02
SYNE1-213ENST00000448038 NCOA7Q8NI08 942 aa8.69□□□□□ -1.02
SYNE1-213ENST00000448038 TULP4Q9NRJ4 1543 aa8.69□□□□□ -1.02
SYNE1-213ENST00000448038 F8W031 263 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-213ENST00000448038 TIMM10P62072 90 aa8.69□□□□□ -1.02
SYNE1-213ENST00000448038 CCT2P78371 535 aaKnown RBP8.69□□□□□ -1.02
SYNE1-213ENST00000448038 ANO8Q9HCE9 1232 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-213ENST00000448038 LAMC1P11047 1609 aa8.69□□□□□ -1.02
SYNE1-213ENST00000448038 NMIQ13287 307 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-213ENST00000448038 TCIRG1Q13488 830 aa8.69□□□□□ -1.02
SYNE1-213ENST00000448038 ZNF594Q96JF6 807 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-213ENST00000448038 ASAP1Q9ULH1 1129 aa8.69□□□□□ -1.02
SYNE1-213ENST00000448038 RBM8AQ9Y5S9 174 aaKnown RBP8.69□□□□□ -1.02
SYNE1-213ENST00000448038 ZC3H13Q5T200 1668 aaKnown RBP8.69□□□□□ -1.02
SYNE1-213ENST00000448038 PNMA6EA0A0J9YXQ4 647 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 TSPY2A6NKD2 308 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 GOLGA8AA7E2F4 631 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 NEURL1BA8MQ27 555 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 TMEM67Q5HYA8 995 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 SEC63Q9UGP8 760 aaKnown RBP8.68□□□□□ -1.02
SYNE1-213ENST00000448038 WWC3Q9ULE0 1092 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 SLC4A4Q9Y6R1 1079 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 PIK3C2BO00750 1634 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 TTLL7Q6ZT98 887 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 A0A1B0GUL7 405 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 GLIPR1L2Q4G1C9 344 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 CATIPQ7Z7H3 387 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 RBM17Q96I25 401 aaKnown RBP8.68□□□□□ -1.02
SYNE1-213ENST00000448038 HMGN5P82970 282 aaKnown RBP8.68□□□□□ -1.02
SYNE1-213ENST00000448038 CCDC96Q2M329 555 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 C8orf76Q96K31 380 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 NEXMIFQ5QGS0 1516 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 HLA-DOAP06340 250 aa8.68□□□□□ -1.02
SYNE1-213ENST00000448038 ABCC4O15439 1325 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 LOC102724428A0A0B4J2F2 783 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 SIK1P57059 783 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 FAM13BQ9NYF5 915 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 RIMBP2O15034 1052 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 GUCY1B3Q02153 619 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 TNNI3KQ59H18 835 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 CCDC24Q8N4L8 307 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 FPGT-TNNI3KV9GXZ4 949 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 ERBB4Q15303 1308 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 RNF113AO15541 343 aaKnown RBP8.67□□□□□ -1.02
SYNE1-213ENST00000448038 KRT18P05783 430 aaKnown RBP8.67□□□□□ -1.02
SYNE1-213ENST00000448038 TRMT2AQ8IZ69 625 aaKnown RBP8.67□□□□□ -1.02
SYNE1-213ENST00000448038 MCM4P33991 863 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 MCM5P33992 734 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 CEP89Q96ST8 783 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 USP44Q9H0E7 712 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 OTUD7AQ8TE49 926 aaPredicted RBP8.67□□□□□ -1.02
SYNE1-213ENST00000448038 TNMDQ9H2S6 317 aa8.67□□□□□ -1.02
SYNE1-213ENST00000448038 SETD1BQ9UPS6 1966 aaKnown RBP8.66□□□□□ -1.02
SYNE1-213ENST00000448038 MYO1BO43795 1136 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 IPO7O95373 1038 aaKnown RBP8.66□□□□□ -1.02
SYNE1-213ENST00000448038 SSRP1Q08945 709 aaKnown RBP8.66□□□□□ -1.02
SYNE1-213ENST00000448038 MICU3Q86XE3 530 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 UNC5CLQ8IV45 518 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 CCDC144CPQ8IYA2 1237 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 MAGEB6Q8N7X4 407 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 DBNDD2Q9BQY9 259 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 TSPY26PQ9H489 355 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 AXIN2Q9Y2T1 843 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 MAGEB6P1A0A0J9YX57 407 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 PUM3Q15397 648 aaKnown RBP8.66□□□□□ -1.02
SYNE1-213ENST00000448038 OGFOD1Q8N543 542 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 RNF123Q5XPI4 1314 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 KDRP35968 1356 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 ZNF76P36508 570 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 NASPP49321 788 aaPredicted RBP8.66□□□□□ -1.02
SYNE1-213ENST00000448038 C8orf34Q49A92 452 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 EYA3Q99504 573 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 JAG2Q9Y219 1238 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 PTCH1Q13635 1447 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 ZNF521Q96K83 1311 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 RAB11FIP4Q86YS3 637 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 HDAC9Q9UKV0 1011 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 CHMLP26374 656 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 MRE11P49959 708 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 PROSER3Q2NL68 480 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 MIGA1Q8NAN2 632 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 BRF1Q92994 677 aa8.66□□□□□ -1.02
SYNE1-213ENST00000448038 TCEANC2Q96MN5 208 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms